Method and apparatus for processing of biological samples for mass spectrometry analysis
| Title: | Method and apparatus for processing of biological samples for mass spectrometry analysis |
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| Patent Number: | 7,858,392 |
| Publication Date: | December 28, 2010 |
| Appl. No: | 11/441176 |
| Application Filed: | May 26, 2006 |
| Abstract: | A system and corresponding method for processing of biological samples prior to spectroscopy analysis. The system includes a support for an organic sample, a solution applicator configured to apply a solution for extraction of at least one biomarker protein from the organic sample. The system includes a digester-medium applicator configured to apply to the organic sample a digesting medium capable of at least partial digestion of the biomarker proteins into peptides. The system includes a heating device configured to heat at least one of the organic sample, the solution, the digesting medium, and the biomarker proteins to a temperature above room temperature. |
| Inventors: | Taranenko, Nelli I. (Columbia, MD, US); Oktem, Berk (Columbia, MD, US); Sundaram, Appavu K. (Montgomery Village, MD, US); Doroshenko, Vladimir M. (Ellicott City, MD, US) |
| Assignees: | Science and Engineering Services, Inc. (Columbia, MD, US) |
| Claim: | 1. A system for processing of organic samples prior to spectroscopy analysis, comprising: a support for an organic sample; a sample applicator configured to apply the organic sample to the support; a solution applicator configured to apply a solution for extraction of at least one biomarker protein from the organic sample; a digester-medium applicator configured to apply to the organic sample a digesting medium capable of at least partial digestion of the biomarker proteins into peptides; and at least one heating device in a temperature controlled region including the digester-medium applicator, the at least one heating device configured to heat at a position different from a spectroscopy analysis position at least two or all of the organic sample, the solution, the digesting medium, and the biomarker proteins to a temperature above room temperature, wherein the support for the organic sample moves in relation to the at least one heating device, and the sample and the digestion medium are applied at separate locations along a direction of motion of the support, with the sample applied to the support in a position other than in the temperature controlled region of the digester-medium applicator. |
| Claim: | 2. The system as in claim 1 , wherein the at least one heating device is configured to maintain the temperature above 50° C. |
| Claim: | 3. The system as in claim 1 , wherein the at least one heating device is configured to maintain the temperature above 67° C. |
| Claim: | 4. The system as in claim 1 , wherein the at least one heating device is configured to maintain the temperature in a range from 50 to 80° C. |
| Claim: | 5. The system as in claim 1 , wherein the sample applicator is configured to apply to the support at least one of a biological agent, a microorganism, a cell culture, a protein sample, a peptide sample, an oligosaccharide sample, a DNA sample, a RNA sample, a lipid sample, a phospholipids sample, a spore, a bacteria, a virus, a toxin, or a combination thereof. |
| Claim: | 6. The system as in claim 1 , further comprising: at least one of an ion mobility spectrometer, a mass spectrometer, or a tandem mass spectrometer. |
| Claim: | 7. The system as in claim 6 , wherein the mass spectrometer comprises: at least one of a MALDI mass spectrometer, a MALDI tandem mass spectrometer, a MALDI ion mobility spectrometer, an AP-MALDI mass spectrometer, an AP-MALDI tandem mass spectrometer, or an AP-MALDI ion mobility spectrometer. |
| Claim: | 8. The system as in claim 1 , further comprising: a matrix applicator configured to apply, for assistance in laser desorption ionization, a matrix solution to the sample. |
| Claim: | 9. The system as in claim 8 , wherein the matrix solution includes at least one of α-cyano-4-hydroxycinnamic acid, 2,5-dihydroxybenzoic acid, sinapinic acid, ferulic acid, or a combination thereof. |
| Claim: | 10. The system as in claim 1 , further comprising: an evaporator configured to evaporate liquid from the support. |
| Claim: | 11. The system as in claim 10 , wherein the evaporator comprises at least one of a forced gas evaporator, a forced air evaporator, a reduced pressure evaporator, and a heated evaporator. |
| Claim: | 12. The system as in claim 10 , wherein the at least one heating device comprises the evaporator. |
| Claim: | 13. The system as in claim 1 , wherein the solution applicator is configured to apply an acidic solution. |
| Claim: | 14. The system as in claim 13 , wherein the sample applicator is configured to apply a spore to the support as the organic sample; and the solution applicator is configured to apply a solution that extracts a protein from the small acid-soluble protein (SASP) family. |
| Claim: | 15. The system as in claim 14 , wherein the solution applicator is configured to apply a trifluoroacetic acid (TFA) solution as the acid solution. |
| Claim: | 16. The system as in claim 1 , wherein the solution applicator is configured to apply a basic solution. |
| Claim: | 17. The system as in claim 16 , wherein: the sample applicator is configured to apply to the support as the sample at least one of a virus, bacteria, spore, toxin, or combination thereof; and the solution applicator is configured to apply at least one of ammonium hydroxide and tris-carbonate or a combination thereof as the basic solution. |
| Claim: | 18. The system as in claim 1 , wherein the digester-medium applicator is configured to apply to the sample at least one of trypsin, subtilisin, chymotrypsin, pepsin, papain, S. aureus V8, elastase, Lys-C endoproteinase, Arg-C endoproteinase, and Glu-C endoproteinase enzymes, or combination of these enzymes. |
| Claim: | 19. The system as in claim 1 , wherein the at least one heating device comprises at least one of a hot plate, a radiative heater, a light heater, a laser heater, or a microwave heater. |
| Claim: | 20. The system as in claim 1 , wherein the support comprises: at least one of a MALDI support or a MALDI target plate. |
| Claim: | 21. The system as in claim 20 , wherein the support comprises: at least one of a gold surface, a silver surface, a polymer surface, a hydrophobic surface, a hydrophilic surface, a polytetrafluoroethane surface, a metallic surface, a dielectric surface, a stainless steel surface, or a combination thereof. |
| Claim: | 22. The system as in claim 1 , further comprising: a solvent applicator configured to apply to the sample a solvent for dissolution of contaminants in the sample; and a solvent removal device configured to remove the applied solvent from the sample and thereby remove at least a part of the contaminants. |
| Claim: | 23. The system as in claim 1 , further comprising: a processor configured to compare mass analysis data from the sample with a protein sequence database. |
| Claim: | 24. The system as in claim 23 , wherein the processor is configured to compare the mass analysis data to known microorganism protein/peptide sequences or genomic sequences to thereby identify a microorganism. |
| Claim: | 25. The system as in claim 24 , wherein the processor is configured to match the at least one biomarker with results generated from a proteomic interpretation of a microorganism proteome/genome. |
| Claim: | 26. The system as in claim 1 , further comprising: said organic sample including at least one of a biological agent, a microorganism, a cell culture, a protein sample, a peptide sample, an oligosaccharide sample, a DNA sample, a RNA sample, a lipid sample, a phospholipids sample, a spore, a bacteria, a virus, a toxin, or a combination thereof. |
| Current U.S. Class: | 436/175 |
| Patent References Cited: | 5288644 February 1994 Beavis et al. 5705813 January 1998 Apffel et al. 5716825 February 1998 Hancock et al. 5872003 February 1999 Koster 6140053 October 2000 Koster 6225061 May 2001 Becker et al. 6730517 May 2004 Koster et al. |
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| Assistant Examiner: | Kilpatrick, Bryan T |
| Primary Examiner: | Siefke, Samuel P |
| Attorney, Agent or Firm: | Oblon, Spivak, McClelland, Maier & Neustadt, L.L.P. |
| Accession Number: | edspgr.07858392 |
| Database: | USPTO Patent Grants |
| Language: | English |
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