| Title: |
Identification of key genes in calcific aortic valve disease via weighted gene co-expression network analysis |
| Authors: |
Jin-Yu Sun, Yang Hua, Hui Shen, Qiang Qu, Jun-Yan Kan, Xiang-Qing Kong, Wei Sun, Yue-Yun Shen |
| Source: |
BMC Medical Genomics, Vol 14, Iss 1, Pp 1-12 (2021) |
| Publisher Information: |
BMC, 2021. |
| Publication Year: |
2021 |
| Collection: |
LCC:Internal medicine
LCC:Genetics |
| Subject Terms: |
Calcific aortic valve disease, Weighted gene co-expression network analysis, Differentially expressed genes, Integrated bioinformatics analysis, Internal medicine, RC31-1245, Genetics, QH426-470 |
| More Details: |
Abstract Background Calcific aortic valve disease (CAVD) is the most common subclass of valve heart disease in the elderly population and a primary cause of aortic valve stenosis. However, the underlying mechanisms remain unclear. Methods The gene expression profiles of GSE83453, GSE51472, and GSE12644 were analyzed by ‘limma’ and ‘weighted gene co-expression network analysis (WGCNA)’ package in R to identify differentially expressed genes (DEGs) and key modules associated with CAVD, respectively. Then, enrichment analysis was performed based on Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, DisGeNET, and TRRUST database. Protein–protein interaction network was constructed using the overlapped genes of DEGs and key modules, and we identified the top 5 hub genes by mixed character calculation. Results We identified the blue and yellow modules as the key modules. Enrichment analysis showed that leukocyte migration, extracellular matrix, and extracellular matrix structural constituent were significantly enriched. SPP1, TNC, SCG2, FAM20A, and CD52 were identified as hub genes, and their expression levels in calcified or normal aortic valve samples were illustrated, respectively. Conclusions This study suggested that SPP1, TNC, SCG2, FAM20A, and CD52 might be hub genes associated with CAVD. Further studies are required to elucidate the underlying mechanisms and provide potential therapeutic targets. |
| Document Type: |
article |
| File Description: |
electronic resource |
| Language: |
English |
| ISSN: |
1755-8794 |
| Relation: |
https://doaj.org/toc/1755-8794 |
| DOI: |
10.1186/s12920-021-00989-w |
| Access URL: |
https://doaj.org/article/813ef87a6e5144a9b068167db170247a |
| Accession Number: |
edsdoj.813ef87a6e5144a9b068167db170247a |
| Database: |
Directory of Open Access Journals |
