Bibliographic Details
| Title: |
SpotClean adjusts for spot swapping in spatial transcriptomics data |
| Authors: |
Zijian Ni, Aman Prasad, Shuyang Chen, Richard B. Halberg, Lisa M. Arkin, Beth A. Drolet, Michael A. Newton, Christina Kendziorski |
| Source: |
Nature Communications, Vol 13, Iss 1, Pp 1-11 (2022) |
| Publisher Information: |
Nature Portfolio, 2022. |
| Publication Year: |
2022 |
| Collection: |
LCC:Science |
| Subject Terms: |
Science |
| More Details: |
Spatial transcriptomics experiments profile genome-wide gene expression at localized spots across a tissue. Here, the authors identify spot swapping, an artifact where RNA expressed at one tissue spot binds probes at another, and they propose SpotClean to adjust for it. |
| Document Type: |
article |
| File Description: |
electronic resource |
| Language: |
English |
| ISSN: |
2041-1723 |
| Relation: |
https://doaj.org/toc/2041-1723 |
| DOI: |
10.1038/s41467-022-30587-y |
| Access URL: |
https://doaj.org/article/66cf14fee50f46db8fe773740c41da35 |
| Accession Number: |
edsdoj.66cf14fee50f46db8fe773740c41da35 |
| Database: |
Directory of Open Access Journals |
