Bibliographic Details
| Title: |
ReconMap: An interactive visualisation of human metabolism |
| Authors: |
Noronha, Alberto, Danielsdóttir, Anna Dröfn, Jóhannsson, Freyr, Jónsdóttir, Soffia, Jarlsson, Sindri, Gunnarsson, Jón Pétur, Brynjólfsson, Sigurður, Gawron, Piotr, Schneider, Reinhard, Thiele, Ines, Fleming, Ronan M. T. |
| Publication Year: |
2016 |
| Collection: |
Quantitative Biology |
| Subject Terms: |
Quantitative Biology - Molecular Networks, Quantitative Biology - Quantitative Methods |
| More Details: |
A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation results. We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators. ReconMap can be accessed via http://vmh.uni.lu, with network export in a Systems Biology Graphical Notation compliant format. A Constraint-Based Reconstruction and Analysis (COBRA) Toolbox extension to interact with ReconMap is available via https://github.com/opencobra/cobratoolbox.
Comment: 3 pages, 1 figure, submitted |
| Document Type: |
Working Paper |
| Access URL: |
http://arxiv.org/abs/1606.00042 |
| Accession Number: |
edsarx.1606.00042 |
| Database: |
arXiv |
