ReconMap: An interactive visualisation of human metabolism

Bibliographic Details
Title: ReconMap: An interactive visualisation of human metabolism
Authors: Noronha, Alberto, Danielsdóttir, Anna Dröfn, Jóhannsson, Freyr, Jónsdóttir, Soffia, Jarlsson, Sindri, Gunnarsson, Jón Pétur, Brynjólfsson, Sigurður, Gawron, Piotr, Schneider, Reinhard, Thiele, Ines, Fleming, Ronan M. T.
Publication Year: 2016
Collection: Quantitative Biology
Subject Terms: Quantitative Biology - Molecular Networks, Quantitative Biology - Quantitative Methods
More Details: A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation results. We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators. ReconMap can be accessed via http://vmh.uni.lu, with network export in a Systems Biology Graphical Notation compliant format. A Constraint-Based Reconstruction and Analysis (COBRA) Toolbox extension to interact with ReconMap is available via https://github.com/opencobra/cobratoolbox.
Comment: 3 pages, 1 figure, submitted
Document Type: Working Paper
Access URL: http://arxiv.org/abs/1606.00042
Accession Number: edsarx.1606.00042
Database: arXiv
More Details
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