Bibliographic Details
| Title: |
CCPlotR: an R package for the visualization of cell–cell interactions. |
| Authors: |
Ennis, Sarah1,2,3 s.ennis6@universityofgalway.ie, Broin, Pilib Ó1,2, Szegezdi, Eva1,3 s.ennis6@universityofgalway.ie |
| Source: |
Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-3. 3p. |
| Subject Terms: |
*CELL communication, *VISUALIZATION, *COMPUTER software, *COMPUTATIONAL biology, *BIOINFORMATICS |
| Abstract: |
Summary We present CCPlotR—an R package that generates visualizations of cell–cell interactions. CCPlotR is designed to work with the output of tools that predict cell–cell interactions from single-cell gene expression data and requires only a table of predicted interactions as input. The package can generate a comprehensive set of publication-ready figures such as heatmaps, dotplots, circos plots and network diagrams, providing a useful resource for researchers working on cell–cell interactions. Availability and implementation CCPlotR is available to download and install from GitHub (https://github.com/Sarah145/CCPlotR) and comes with a toy dataset to demonstrate the different functions. Support for users will be provided via the GitHub issues tracker (https://github.com/Sarah145/CCPlotR/issues). [ABSTRACT FROM AUTHOR] |
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| Database: |
Academic Search Complete |
