Academic Journal
Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot
| Title: | Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot |
|---|---|
| Authors: | Jin-Feng Peng, Yusufjon Gafforov, Jian Yu, Hong-Jun Yang, Yuan-Yuan Chen, Yi-Fan Xing, Jia-Jia Chen |
| Source: | Data in Brief, Vol 57, Iss , Pp 110930- (2024) |
| Publisher Information: | Elsevier, 2024. |
| Publication Year: | 2024 |
| Collection: | LCC:Computer applications to medicine. Medical informatics LCC:Science (General) |
| Subject Terms: | Deodar cedar tree, Cedar root rot, Oomycete pathogens, Genome sequence, Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390 |
| More Details: | Pythium species are distributed globally, with certain members playing significant roles as plant and animal pathogens. Pythium cedri Chen 4 has been identified as a pathogenic isolate responsible for causing root rot on Cedrus deodara. Here, a comprehensive genome-wide sequence of P. cedri strain Chen 4 utilizing the Illumina NovaSeq sequencing platform and a Pacific Biosciences Sequel sequencing platform is presented. The genome of P. cedri strain Chen 4 was assembled into 150 contigs containing a combined size of 41.25 Mb, N50 value of 1,717,859 bp and N90 value of 431,829 bp. Genome annotation revealed 14,077 protein-encoding genes and 364 of the 1016 predicted proteins were putative effectors. The present work enriches the genetic resources of P. cedri for studying its evolution and can contribute to a better understanding of P. cedri–host interaction. |
| Document Type: | article |
| File Description: | electronic resource |
| Language: | English |
| ISSN: | 2352-3409 |
| Relation: | http://www.sciencedirect.com/science/article/pii/S235234092400893X; https://doaj.org/toc/2352-3409 |
| DOI: | 10.1016/j.dib.2024.110930 |
| Access URL: | https://doaj.org/article/947a18b7933340148cde0737c7d628c3 |
| Accession Number: | edsdoj.947a18b7933340148cde0737c7d628c3 |
| Database: | Directory of Open Access Journals |
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