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Comparative transcriptome and gut microbiota analysis of Exopalaemon carinicauda with different growth rates from a full-sib family

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Title: Comparative transcriptome and gut microbiota analysis of Exopalaemon carinicauda with different growth rates from a full-sib family
Authors: Chaofan Xing, Jiayao Xiong, Shumin Xie, Hanxuan Guo, Songsong Hua, Yajie Yao, Jiawei Zhu, Binlun Yan, Xin Shen, Huan Gao, Panpan Wang
Source: Aquaculture Reports, Vol 30, Iss , Pp 101580- (2023)
Publisher Information: Elsevier, 2023.
Publication Year: 2023
Collection: LCC:Aquaculture. Fisheries. Angling
Subject Terms: Exopalaemon carinicauda, Weight gain, Transcriptome, Gut microbiota, Crustacean, Aquaculture. Fisheries. Angling, SH1-691
More Details: In the breeding process of Exopalaemon carinicauda from the same family, noticeable differences often occur in growth characteristics under the same conditions. To investigate this issue, we performed a comparative transcriptome analysis to identify the critical genes involved in weight gain and compared the intestinal flora to screen for potential intestinal probiotics. In total, we identified 1311 differentially expressed genes (DEGs), of which 735 genes, including troponin C, chitinase, cathepsin B, cathepsin L, and trypsin, were upregulated exclusively in the fast growth group. Several DEGs were validated by quantitative real-time PCR and assigned to the ribosome, phagosome, apoptosis, purine metabolism, and Hippo signaling pathways. The microbiome community richness and diversity of the fast-growing individuals (FGIs) were higher than those of the slow-growing individuals (SGIs). In the current study, the intestinal microflora was mainly distributed in the Proteobacteria, Firmicutes, and Bacteroidota. The species with significant differences (P
Document Type: article
File Description: electronic resource
Language: English
ISSN: 2352-5134
Relation: http://www.sciencedirect.com/science/article/pii/S2352513423001199; https://doaj.org/toc/2352-5134
DOI: 10.1016/j.aqrep.2023.101580
Access URL: https://doaj.org/article/a3b2864d0a7a40c192d943bdcb890310
Accession Number: edsdoj.3b2864d0a7a40c192d943bdcb890310
Database: Directory of Open Access Journals
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  Data: Comparative transcriptome and gut microbiota analysis of Exopalaemon carinicauda with different growth rates from a full-sib family
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  Data: <searchLink fieldCode="AR" term="%22Chaofan+Xing%22">Chaofan Xing</searchLink><br /><searchLink fieldCode="AR" term="%22Jiayao+Xiong%22">Jiayao Xiong</searchLink><br /><searchLink fieldCode="AR" term="%22Shumin+Xie%22">Shumin Xie</searchLink><br /><searchLink fieldCode="AR" term="%22Hanxuan+Guo%22">Hanxuan Guo</searchLink><br /><searchLink fieldCode="AR" term="%22Songsong+Hua%22">Songsong Hua</searchLink><br /><searchLink fieldCode="AR" term="%22Yajie+Yao%22">Yajie Yao</searchLink><br /><searchLink fieldCode="AR" term="%22Jiawei+Zhu%22">Jiawei Zhu</searchLink><br /><searchLink fieldCode="AR" term="%22Binlun+Yan%22">Binlun Yan</searchLink><br /><searchLink fieldCode="AR" term="%22Xin+Shen%22">Xin Shen</searchLink><br /><searchLink fieldCode="AR" term="%22Huan+Gao%22">Huan Gao</searchLink><br /><searchLink fieldCode="AR" term="%22Panpan+Wang%22">Panpan Wang</searchLink>
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  Data: Aquaculture Reports, Vol 30, Iss , Pp 101580- (2023)
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  Data: Elsevier, 2023.
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  Data: <searchLink fieldCode="DE" term="%22Exopalaemon+carinicauda%22">Exopalaemon carinicauda</searchLink><br /><searchLink fieldCode="DE" term="%22Weight+gain%22">Weight gain</searchLink><br /><searchLink fieldCode="DE" term="%22Transcriptome%22">Transcriptome</searchLink><br /><searchLink fieldCode="DE" term="%22Gut+microbiota%22">Gut microbiota</searchLink><br /><searchLink fieldCode="DE" term="%22Crustacean%22">Crustacean</searchLink><br /><searchLink fieldCode="DE" term="%22Aquaculture%2E+Fisheries%2E+Angling%22">Aquaculture. Fisheries. Angling</searchLink><br /><searchLink fieldCode="DE" term="%22SH1-691%22">SH1-691</searchLink>
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  Data: In the breeding process of Exopalaemon carinicauda from the same family, noticeable differences often occur in growth characteristics under the same conditions. To investigate this issue, we performed a comparative transcriptome analysis to identify the critical genes involved in weight gain and compared the intestinal flora to screen for potential intestinal probiotics. In total, we identified 1311 differentially expressed genes (DEGs), of which 735 genes, including troponin C, chitinase, cathepsin B, cathepsin L, and trypsin, were upregulated exclusively in the fast growth group. Several DEGs were validated by quantitative real-time PCR and assigned to the ribosome, phagosome, apoptosis, purine metabolism, and Hippo signaling pathways. The microbiome community richness and diversity of the fast-growing individuals (FGIs) were higher than those of the slow-growing individuals (SGIs). In the current study, the intestinal microflora was mainly distributed in the Proteobacteria, Firmicutes, and Bacteroidota. The species with significant differences (P
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      – SubjectFull: Exopalaemon carinicauda
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      – SubjectFull: Weight gain
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      – SubjectFull: Transcriptome
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      – SubjectFull: Gut microbiota
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