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Tools for pathogen genetic surveillance: Lessons from the ash dieback invasion of Europe.

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Title: Tools for pathogen genetic surveillance: Lessons from the ash dieback invasion of Europe.
Authors: Peers, Jessica A.1 (AUTHOR), Leggett, Richard M.1 (AUTHOR), Clark, Matthew D.2 (AUTHOR), McMullan, Mark1 (AUTHOR) Mark.McMullan@earlham.ac.uk
Source: PLoS Pathogens. 5/23/2024, Vol. 20 Issue 5, p1-7. 7p.
Subject Terms: *DIEBACK, *POPULATION genetics, *NATURAL selection, *AGRICULTURE, *GENETIC variation
Abstract: This article discusses the importance of genomic surveillance in studying pathogen invasions, using the example of the ash dieback invasion of Europe caused by Hymenoscyphus fraxineus. The ash dieback invasion has had significant economic and ecological impacts, and understanding the genetic variation within the pathogen is crucial for effective management strategies. The article highlights the significance of different types of genomic variation, such as nucleotide substitutions, haplotype diversity, and structural genomic variation, in invasion biology. The authors also discuss various genomic surveillance strategies, including targeted resequencing, whole genome resequencing, and pangenomics, and suggest the potential of air sequencing as a pathogen surveillance method. [Extracted from the article]
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  Data: Tools for pathogen genetic surveillance: Lessons from the ash dieback invasion of Europe.
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  Data: <searchLink fieldCode="AR" term="%22Peers%2C+Jessica+A%2E%22">Peers, Jessica A.</searchLink><relatesTo>1</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22Leggett%2C+Richard+M%2E%22">Leggett, Richard M.</searchLink><relatesTo>1</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22Clark%2C+Matthew+D%2E%22">Clark, Matthew D.</searchLink><relatesTo>2</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22McMullan%2C+Mark%22">McMullan, Mark</searchLink><relatesTo>1</relatesTo> (AUTHOR)<i> Mark.McMullan@earlham.ac.uk</i>
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  Data: <searchLink fieldCode="JN" term="%22PLoS+Pathogens%22">PLoS Pathogens</searchLink>. 5/23/2024, Vol. 20 Issue 5, p1-7. 7p.
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  Data: *<searchLink fieldCode="DE" term="%22DIEBACK%22">DIEBACK</searchLink><br />*<searchLink fieldCode="DE" term="%22POPULATION+genetics%22">POPULATION genetics</searchLink><br />*<searchLink fieldCode="DE" term="%22NATURAL+selection%22">NATURAL selection</searchLink><br />*<searchLink fieldCode="DE" term="%22AGRICULTURE%22">AGRICULTURE</searchLink><br />*<searchLink fieldCode="DE" term="%22GENETIC+variation%22">GENETIC variation</searchLink>
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  Data: This article discusses the importance of genomic surveillance in studying pathogen invasions, using the example of the ash dieback invasion of Europe caused by Hymenoscyphus fraxineus. The ash dieback invasion has had significant economic and ecological impacts, and understanding the genetic variation within the pathogen is crucial for effective management strategies. The article highlights the significance of different types of genomic variation, such as nucleotide substitutions, haplotype diversity, and structural genomic variation, in invasion biology. The authors also discuss various genomic surveillance strategies, including targeted resequencing, whole genome resequencing, and pangenomics, and suggest the potential of air sequencing as a pathogen surveillance method. [Extracted from the article]
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  Data: <i>Copyright of PLoS Pathogens is the property of Public Library of Science and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
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              Text: 5/23/2024
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              Y: 2024
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