Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity

Authors: Hoopes, Genevieve, Meng, Xiaoxi, Hamilton, John P., Achakkagari, Sai Reddy, de Alves Freitas Guesdes, Fernanda, Bolger, Marie E., Coombs, Joseph J., Esselink, Danny, Kaiser, Natalie R., Kodde, Linda, Kyriakidou, Maria, Lavrijssen, Brian, van Lieshout, Natascha, Shereda, Rachel, Tuttle, Heather K., Vaillancourt, Brieanne, Wood, Joshua C., de Boer, Jan M., Bornowski, Nolan, Bourke, Peter, Douches, David, van Eck, Herman J., Ellis, Dave, Feldman, Max J., Gardner, Kyle M., Hopman, Johannes C.P., Jiang, Jiming, De Jong, Walter S., Kuhl, Joseph C., Novy, Richard G., Oome, Stan, Sathuvalli, Vidyasagar, Tan, Ek Han, Ursum, Remco A., Vales, M. Isabel, Vining, Kelly, Visser, Richard G.F., Vossen, Jack, Yencho, G. Craig, Anglin, Noelle L., Bachem, Christian W.B., Endelman, Jeffrey B., Shannon, Laura M., Strömvik, Martina V., Tai, Helen H., Usadel, Björn, Buell, C. Robin, Finkers, Richard

Source: In Molecular Plant 7 March 2022 15(3):520-536

Exploring genetic suppression interactions on a global scale

Authors: van Leeuwen, Jolanda, Pons, Carles, Mellor, Joseph C., Yamaguchi, Takafumi N., Friesen, Helena, Koschwanez, John, Ušaj, Mojca Mattiazzi, Pechlaner, Maria, Takar, Mehmet, Ušaj, Matej, VanderSluis, Benjamin, Andrusiak, Kerry, Bansal, Pritpal, Baryshnikova, Anastasia, Boone, Claire E., Cao, Jessica, Cote, Atina, Gebbia, Marinella, Horecka, Gene, Horecka, Ira, Kuzmin, Elena, Legro, Nicole, Liang, Wendy, van Lieshout, Natascha, McNee, Margaret, San Luis, Bryan-Joseph, Shaeri, Fatemeh, Shuteriqi, Ermira, Sun, Song, Yang, Lu, Youn, Ji-Young, Yuen, Michael, Costanzo, Michael, Gingras, Anne-Claude, Aloy, Patrick, Oostenbrink, Chris, Murray, Andrew, Graham, Todd R., Myers, Chad L., Andrews, Brenda J., Roth, Frederick P., Boone, Charles

Source: Science, 2016 Nov 01. 354(6312), 599-599.

Access URL: https://www.jstor.org/stable/44710937

Allelic variation in the autotetraploid potato: genes involved in starch and steroidal glycoalkaloid metabolism as a case study.

Authors: Li, Hongbo, Brouwer, Matthijs, Pup, Elena Del, van Lieshout, Natascha, Finkers, Richard, Bachem, Christian W. B., Visser, Richard G. F.

Source: BMC Genomics; 3/12/2024, Vol. 25 Issue 1, p1-24, 24p

Subject Terms: STARCH, STARCH metabolism, GENES, POTATOES, METABOLISM, GENETIC variation

De novo whole-genome assembly of Chrysanthemum makinoi, a key wild chrysanthemum.

Authors: van Lieshout, Natascha¹, van Kaauwen, Martijn¹, Kodde, Linda¹, Arens, Paul¹ paul.arens@wur.nl, Smulders, Marinus J. M.¹, Visser, Richard G. F.¹, Finkers, Richard¹ richard.finkers@wur.nl

Source: G3: Genes | Genomes | Genetics. Jan2022, Vol. 12 Issue 1, p1-8. 8p.

Subject Terms: *CHRYSANTHEMUMS, *PERENNIALS, *GENE mapping, *FLOWER gardening

Solyntus, the New Highly Contiguous Reference Genome for Potato (Solanum tuberosum).

Authors: van Lieshout, Natascha¹, van der Burgt, Ate², de Vries, Michiel E.², Maat, Menno ter², Eickholt, David³, Esselink, Danny¹, van Kaauwen, Martijn P. W.¹, Kodde, Linda P.¹, Visser, Richard G. F.¹, Lindhout, Pim², Finkers, Richard¹ richard.finkers@wur.nl

Source: G3: Genes | Genomes | Genetics. Oct2020, Vol. 10 Issue 10, p3489-3495. 7p.

Subject Terms: *PLANT breeding, *GENOMES, *FOOD crops, *SOLANACEAE, *CHROMOSOMES, *SOLANUM

A reference map of the human binary protein interactome

Authors: Luck, Katja, Kim, Dae-Kyum, Lambourne, Luke, Spirohn, Kerstin, Begg, Bridget E., Bian, Wenting, Brignall, Ruth, Cafarelli, Tiziana, Campos-Laborie, Francisco J., Charloteaux, Benoit, Choi, Dongsic, Coté, Atina G., Daley, Meaghan, Deimling, Steven, Desbuleux, Alice, Dricot, Amélie, Gebbia, Marinella, Hardy, Madeleine F., Kishore, Nishka, Knapp, Jennifer J., Kovács, István A., Lemmens, Irma, Mee, Miles W., Mellor, Joseph C., Pollis, Carl, Pons, Carles, Richardson, Aaron D., Schlabach, Sadie, Teeking, Bridget, Yadav, Anupama, Babor, Mariana, Balcha, Dawit, Basha, Omer, Bowman-Colin, Christian, Chin, Suet-Feung, Choi, Soon Gang, Colabella, Claudia, Coppin, Georges, D’Amata, Cassandra, De Ridder, David, De Rouck, Steffi, Duran-Frigola, Miquel, Ennajdaoui, Hanane, Goebels, Florian, Goehring, Liana, Gopal, Anjali, Haddad, Ghazal, Hatchi, Elodie, Helmy, Mohamed, Jacob, Yves, Kassa, Yoseph, Landini, Serena, Li, Roujia, van Lieshout, Natascha, MacWilliams, Andrew, Markey, Dylan, Paulson, Joseph N., Rangarajan, Sudharshan, Rasla, John, Rayhan, Ashyad, Rolland, Thomas, San-Miguel, Adriana, Shen, Yun, Sheykhkarimli, Dayag, Sheynkman, Gloria M., Simonovsky, Eyal, Taşan, Murat, Tejeda, Alexander, Tropepe, Vincent, Twizere, Jean-Claude, Wang, Yang, Weatheritt, Robert J., Weile, Jochen, Xia, Yu, Yang, Xinping, Yeger-Lotem, Esti, Zhong, Quan, Aloy, Patrick, Bader, Gary D., De Las Rivas, Javier, Gaudet, Suzanne, Hao, Tong, Rak, Janusz, Tavernier, Jan, Hill, David E., Vidal, Marc, Roth, Frederick P., Calderwood, Michael A.

Source: Nature; April 2020, Vol. 580 Issue: 7803 p402-408, 7p

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