Plasma proteomics of acute tubular injury

Authors: Insa M. Schmidt, Aditya L. Surapaneni, Runqi Zhao, Dhairya Upadhyay, Wan-Jin Yeo, Pascal Schlosser, Courtney Huynh, Anand Srivastava, Ragnar Palsson, Taesoo Kim, Isaac E. Stillman, Daria Barwinska, Jonathan Barasch, Michael T. Eadon, Tarek M. El-Achkar, Joel Henderson, Dennis G. Moledina, Sylvia E. Rosas, Sophie E. Claudel, Ashish Verma, Yumeng Wen, Maja Lindenmayer, Tobias B. Huber, Samir V. Parikh, John P. Shapiro, Brad H. Rovin, Ian B. Stanaway, Neha A. Sathe, Pavan K. Bhatraju, Josef Coresh, the Kidney Precision Medicine Project, Eugene P. Rhee, Morgan E. Grams, Sushrut S. Waikar

Source: Nature Communications, Vol 15, Iss 1, Pp 1-11 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/41855c04b12d4c92a5497040b3021033

The chromatin landscape of healthy and injured cell types in the human kidney

Authors: Debora L. Gisch, Michelle Brennan, Blue B. Lake, Jeannine Basta, Mark S. Keller, Ricardo Melo Ferreira, Shreeram Akilesh, Reetika Ghag, Charles Lu, Ying-Hua Cheng, Kimberly S. Collins, Samir V. Parikh, Brad H. Rovin, Lynn Robbins, Lisa Stout, Kimberly Y. Conklin, Dinh Diep, Bo Zhang, Amanda Knoten, Daria Barwinska, Mahla Asghari, Angela R. Sabo, Michael J. Ferkowicz, Timothy A. Sutton, Katherine J. Kelly, Ian H. De Boer, Sylvia E. Rosas, Krzysztof Kiryluk, Jeffrey B. Hodgin, Fadhl Alakwaa, Seth Winfree, Nichole Jefferson, Aydın Türkmen, Joseph P. Gaut, Nils Gehlenborg, Carrie L. Phillips, Tarek M. El-Achkar, Pierre C. Dagher, Takashi Hato, Kun Zhang, Jonathan Himmelfarb, Matthias Kretzler, Shamim Mollah, the Kidney Precision Medicine Project (KPMP), Sanjay Jain, Michael Rauchman, Michael T. Eadon

Source: Nature Communications, Vol 15, Iss 1, Pp 1-21 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/8d81e0f3c4d54dd6b9a6681fc0df894c

A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease

Authors: Victor Hugo Canela, William S. Bowen, Ricardo Melo Ferreira, Farooq Syed, James E. Lingeman, Angela R. Sabo, Daria Barwinska, Seth Winfree, Blue B. Lake, Ying-Hua Cheng, Joseph P. Gaut, Michael Ferkowicz, Kaice A. LaFavers, Kun Zhang, Fredric L. Coe, Elaine Worcester, the Kidney Precision Medicine Project, Sanjay Jain, Michael T. Eadon, James C. Williams, Tarek M. El-Achkar

Source: Nature Communications, Vol 14, Iss 1, Pp 1-17 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/9079daace87a49889ca16163b6717e46

A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology

Authors: Brendon Lutnick, David Manthey, Jan U. Becker, Brandon Ginley, Katharina Moos, Jonathan E. Zuckerman, Luis Rodrigues, Alexander J. Gallan, Laura Barisoni, Charles E. Alpers, Xiaoxin X. Wang, Komuraiah Myakala, Bryce A. Jones, Moshe Levi, Jeffrey B. Kopp, Teruhiko Yoshida, Jarcy Zee, Seung Seok Han, Sanjay Jain, Avi Z. Rosenberg, Kuang Yu. Jen, Pinaki Sarder, the Kidney Precision Medicine Project

Source: Communications Medicine, Vol 2, Iss 1, Pp 1-15 (2022)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2730-664X

Access URL: https://doaj.org/article/55a83f05e2a54ed1a808a7fafb19b7b9

Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney

Authors: Tara K. Sigdel, Paul D. Piehowski, Sudeshna Roy, Juliane Liberto, Joshua R. Hansen, Adam C. Swensen, Rui Zhao, Ying Zhu, Priyanka Rashmi, Andrew Schroeder, Izabella Damm, Swastika Sur, Jinghui Luo, Yingbao Yang, Wei-Jun Qian, Minnie M. Sarwal, The Kidney Precision Medicine Project (KPMP) Consortium

Source: Frontiers in Medicine, Vol 7 (2020)

Subject Terms: glomerulus, mass spectrometry, single cell analysis, proteomics, kidney, Medicine (General), R5-920

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmed.2020.00499/full; https://doaj.org/toc/2296-858X

Access URL: https://doaj.org/article/3732ec0f49974b1fabd73c81171d8162

Application of Laser Microdissection to Uncover Regional Transcriptomics in Human Kidney Tissue

Authors: Daria Barwinska, author¹, Michael J. Ferkowicz, author¹, Ying-Hua Cheng, author¹, Seth Winfree, author^{1, 2}, Kenneth W. Dunn, author¹, Katherine J. Kelly, author¹, Timothy A. Sutton, author¹, Brad H. Rovin, author³, Samir V. Parikh, author³, Carrie L. Phillips, author⁴, Pierre C. Dagher, author¹, Tarek M. El-Achkar, author¹, Michael T. Eadon, author¹, For The Kidney Precision Medicine Project

Source: Journal of Visualized Experiments. (160)

Availability: http://www.jove.com/video/61371

A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease.

Authors: Canela, Victor Hugo, Bowen, William S., Ferreira, Ricardo Melo, Syed, Farooq, Lingeman, James E., Sabo, Angela R., Barwinska, Daria, Winfree, Seth, Lake, Blue B., Cheng, Ying-Hua, Gaut, Joseph P., Ferkowicz, Michael, LaFavers, Kaice A., Zhang, Kun, Coe, Fredric L., Worcester, Elaine, the Kidney Precision Medicine Project, Jain, Sanjay, Eadon, Michael T., Williams Jr., James C.

Source: Nature Communications; 7/19/2023, Vol. 14 Issue 1, p1-17, 17p

Subject Terms: KIDNEY stones, MEDICAL care use, CALCIUM oxalate, TRANSCRIPTOMES, MATRIX metalloproteinases, KIDNEYS

Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline.

Authors: Ferkowicz, Michael J., Winfree, Seth, Sabo, Angela R., Kamocka, Malgorzata M., Khochare, Suraj, Barwinska, Daria, Eadon, Michael T., Cheng, Ying-Hua, Phillips, Carrie L., Sutton, Timothy A., Kelly, Katherine J., Dagher, Pierre C., El-Achkar, Tarek M., Dunn, Kenneth W., for the Kidney Precision Medicine Project, Knight, Richard, Lecker, Stewart, Stillman, Isaac, Mcmahon, Gearoid, Waikar, Sus

Source: Laboratory Investigation (00236837); May2021, Vol. 101 Issue 5, p661-676, 16p

Endogenous adenine mediates kidney injury in diabetic models and predicts diabetic kidney disease in patients

Authors: Kumar Sharma, Guanshi Zhang, Jens Hansen, Petter Bjornstad, Hak Joo Lee, Rajasree Menon, Leila Hejazi, Jian-Jun Liu, Anthony Franzone, Helen C. Looker, Byeong Yeob Choi, Roman Fernandez, Manjeri A. Venkatachalam, Luxcia Kugathasan, Vikas S. Sridhar, Loki Natarajan, Jing Zhang, Varun S. Sharma, Brian Kwan, Sushrut S. Waikar, Jonathan Himmelfarb, Katherine R. Tuttle, Bryan Kestenbaum, Tobias Fuhrer, Harold I. Feldman, Ian H. de Boer, Fabio C. Tucci, John Sedor, Hiddo Lambers Heerspink, Jennifer Schaub, Edgar A. Otto, Jeffrey B. Hodgin, Matthias Kretzler, Christopher R. Anderton, Theodore Alexandrov, David Cherney, Su Chi Lim, Robert G. Nelson, Jonathan Gelfond, Ravi Iyengar, for the Kidney Precision Medicine Project

Source: The Journal of Clinical Investigation, Vol 133, Iss 20 (2023)

Subject Terms: Nephrology, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/1558-8238

Access URL: https://doaj.org/article/15a3cc7202a34114a72f51162fa19310

Urinary EGF and MCP-1 and risk of CKD after cardiac surgery

Authors: Steven Menez, Wenjun Ju, Rajasree Menon, Dennis G. Moledina, Heather Thiessen Philbrook, Eric McArthur, Yaqi Jia, Wassim Obeid, Sherry G. Mansour, Jay L. Koyner, Michael G. Shlipak, Steven G. Coca, Amit X. Garg, Andrew S. Bomback, John A. Kellum, Matthias Kretzler, Chirag R. Parikh, for the Translational Research Investigating Biomarker Endpoints in AKI (TRIBE-AKI) Consortium and the Kidney Precision Medicine Project

Source: JCI Insight, Vol 6, Iss 11 (2021)

Subject Terms: Nephrology, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2379-3708

Access URL: https://doaj.org/article/c734c2e9657c424e98fba3967bf94a44