Identifying Associations Between Small Nucleolar RNAs and Diseases via Graph Convolutional Network and Attention Mechanism

Authors: Liu, S., Zhu, W., Wang, P., Yu, S., Wu, F.

Source: IEEE Journal of Biomedical and Health Informatics IEEE J. Biomed. Health Inform. Biomedical and Health Informatics, IEEE Journal of. 28(12):7647-7658 Dec, 2024

sdRNA-D43 derived from small nucleolar RNA snoRD43 improves chondrocyte senescence and osteoarthritis progression by negatively regulating PINK1/Parkin-mediated mitophagy pathway via dual-targeting NRF1 and WIPI2

Authors: Zengfa Deng, Changzhao Li, Shu Hu, Yanlin Zhong, Wei Li, Zhencan Lin, Xiaolin Mo, Ming Li, Dongliang Xu, Dianbo Long, Guping Mao, Yan Kang

Source: Cell Communication and Signaling, Vol 23, Iss 1, Pp 1-21 (2025)

Subject Terms: sdRNA-D43, snoRNA, Osteoarthritis, Chondrocyte senescence, Mitophagy, Medicine, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/1478-811X

Access URL: https://doaj.org/article/7f5fbe16354c44d0aacc26fffc00e34f

snoRNA box C/D levels in leukemia cells in chromosomal abnormalities after irradiation

Authors: E. V. Rastorgueva, E. S. Pogodina, E. V. Iurova, E. A. Beloborodov, D. E. Sugak, I. A. Tumozov, Yu. V. Saenko, A. Ni. Fomin

Source: Сибирский онкологический журнал, Vol 23, Iss 6, Pp 97-106 (2025)

Subject Terms: ncrna, snorna c/d box, biomarkers, radioresistance, chromosomal abnormalities, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.siboncoj.ru/jour/article/view/3358; https://doaj.org/toc/1814-4861; https://doaj.org/toc/2312-3168

Access URL: https://doaj.org/article/763e80630da34db8a23aaefddd2c3ae3

iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework

Authors: Zhang, W., Liu, B.

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 20(5):3013-3019 Jan, 2023

snoRNA-facilitated protein secretion revealed by transcriptome-wide snoRNA target identification

Authors: Liu, Bei ^{1, 2}, Wu, Tong ^{1, 2}, Miao, Bernadette A. ^{2, 3, 4}, Ji, Fei ^{2, 5, 6}, Liu, Shun ^{1, 2}, Wang, Pingluan ^{1, 2}, Zhao, Yutao ^{1, 2}, Zhong, Yuhao ^{1, 2}, Sundaram, Arunkumar ⁷, Zeng, Tie-Bo ^{1, 2}, Majcherska-Agrawal, Marta ^{2, 8}, Keenan, Robert J. ⁷, Pan, Tao ^{7, ∗}, He, Chuan ^{1, 2, 7, 9, 10, ∗∗}

Source: In Cell 23 January 2025 188(2):465-483

The regulatory roles of small nucleolar RNAs within their host locus

Authors: Étienne Fafard-Couture, Stéphane Labialle, Michelle S Scott

Source: RNA Biology, Vol 21, Iss 1, Pp 496-506 (2024)

Subject Terms: snoRNA, cis-regulation, sno-lncRNAs, snoRTs, slb-snoRNAs, SPAs, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1547-6286; https://doaj.org/toc/1555-8584

Access URL: https://doaj.org/article/8a82dda95a2847538b50912c150cf24e

ctDNA SNORD3F Hypermethylation is a Prognostic Indicator in EGFR-TKI-Treated Advanced Non-Small Cell Lung Cancer

Authors: Liu B, Zhao B, Yin Y, Jiang Y, Feng X, Wang L, Zhai L, Liu G, Shi D, Qin J

Source: Cancer Management and Research, Vol Volume 16, Pp 1405-1416 (2024)

Subject Terms: ctdna, egfr, dna methylation, lung cancer, snorna, snord3f, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.dovepress.com/ctdna-snord3f-hypermethylation-is-a-prognostic-indicator-in-egfr-tki-t-peer-reviewed-fulltext-article-CMAR; https://doaj.org/toc/1179-1322

Access URL: https://doaj.org/article/b590255e538042b29b580767162d7e67

Serum exosomal small nucleolar RNA (snoRNA) signatures as a predictive biomarker for benign and malignant pulmonary nodules

Authors: Fei Cao, Qian You, Feng Zhu, Yu Zhang

Source: Cancer Cell International, Vol 24, Iss 1, Pp 1-9 (2024)

Subject Terms: Serum, Exosome, snoRNA, Biomarker, Benign pulmonary nodules, Malignant pulmonary nodules, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/1475-2867

Access URL: https://doaj.org/article/877642964cde4248ac26a8351bf1a136

Footprints in the Sno: investigating the cellular and molecular mechanisms of SNORD116

Authors: Terri L. Holmes, Alzbeta Chabronova, Chris Denning, Victoria James, Mandy J. Peffers, James G. W. Smith

Source: Open Biology, Vol 15, Iss 3 (2025)

Subject Terms: SNORD116, snoRNA, metabolism, cell signalling, Prader–Willi syndrome, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2046-2441

Access URL: https://doaj.org/article/3f6167428899400e9359280e5c3b4afc

Accurate identification of snoRNA targets using variational graph autoencoder to advance the redevelopment of traditional medicines

Authors: Zhina Wang, Yangyuan Chen, Hongming Ma, Hong Gao, Yangbin Zhu, Hongwu Wang, Nan Zhang

Source: Frontiers in Pharmacology, Vol 15 (2025)

Subject Terms: redevelopment of traditional medicines, snoRNA therapeutic targets, lung cancer, variational graph autoencoder (VGAE), artificial intelligence (AI), Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphar.2024.1529128/full; https://doaj.org/toc/1663-9812

Access URL: https://doaj.org/article/c553efc486264dfca34df3bbee44c6bc

microRNAs in Health and Disease

Contributors: Rizzo, Milena, Levantini, Elena

Subject Terms: miRNA, mammary gland, lactation, obesogenic diet, microRNA, digital PCR, biomarkers, extraction-free, plasma, obesity, pregnancy, next-generation sequencing, cancer, gene regulation, small nucleolar RNA (snoRNA), small nucleolar derived RNA (sdRNA), microRNA (miRNA), RNA, snoRNA, sdRNA, genetics, ALS mouse model, anti-microRNA-124, intraspinal delivery route, neuroprotection, prevention of glial dysfunction, preservation of motor performance, secretome-based therapy, SOD1-G93A mutation, miR-29, biomarker, therapeutic target, recurrent pregnancy loss, single-nucleotide polymorphism (SNP), extracellular vesicles, biogenesis, cargo sorting, tissue repair and regeneration, uterine leiomyosarcoma, endometrial stromal sarcoma, epigenetics mechanisms, ncRNA, DNA methylation, histones modifications, arrhythmogenic cardiomyopathy, lncRNA, circRNA, pseudogene, ceRNA, Wnt/β-catenin pathway, Hippo pathway, microRNAs1, hippocampus, hypoxia, transposons, LINE1, p53, pediatric cancer, human breast milk, polymerase chain reaction (PCR), microRNA characterization, ovarian cancer, saliva, urine, ascites, blood, biofluids, early diagnosis, screening, intracerebral hemorrhage, aging, RNA medicine, breast cancer, actinic keratosis, cSCC, Medicine: general issues

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/137917
https://mdpi.com/books/pdfview/book/9181

SnoRNAs: The promising targets for anti-tumor therapy

Authors: Hu, Xiaoyun ^{a, b, c, 1}, Cui, Wanlin ^{a, b, 1}, Liu, Min ^{a, b, 1}, Zhang, Fangxiao ^{d, 1}, Zhao, Yingqi ^{a, b}, Zhang, Mingrong ^{a, b}, Yin, Yuhang ^{a, b}, Li, Yalun ^e, Che, Ying ^{a, b}, Zhu, Xianglong ^{a, b}, Fan, Yuxuan ^{a, b}, Deng, Xiaolan ^{f, ⁎⁎⁎}, Wei, Minjie ^{a, b, c, g, ⁎⁎}, Wu, Huizhe ^{a, b, c, g, ⁎}

Source: In Journal of Pharmaceutical Analysis November 2024 14(11)

GCNSDA: Predicting snoRNA-disease associations via graph convolutional network

Authors: Liu, Dayun, Luo, Yi, Zheng, Jingjing, Xu, Hanlin, Zhang, Jiaxuan, Deng, Lei

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :183-188 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

GL4SDA: Predicting snoRNA-disease associations using GNNs and LLM embeddings

Authors: La Rosa, Massimo ¹, Fiannaca, Antonino ¹, Mendolia, Isabella ^⁎, La Paglia, Laura ^{⁎, 2}, Urso, Alfonso ²

Source: In Computational and Structural Biotechnology Journal 2025 27:1023-1033

Non-coding RNAs in oral cancer: Emerging biomarkers and therapeutic frontier

Authors: Mehrdad Hashemi, Saloomeh Khoushab, Mina Hobabi Aghmiuni, Saeid Nemati Anaraki, Mina Alimohammadi, Afshin Taheriazam, Najma Farahani, Maliheh Entezari

Source: Heliyon, Vol 10, Iss 21, Pp e40096- (2024)

Subject Terms: Transcriptome, OSCC, circRNA, miRNA, lncRNA, snoRNA, Science (General), Q1-390, Social sciences (General), H1-99

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405844024161270; https://doaj.org/toc/2405-8440

Access URL: https://doaj.org/article/8379fe68a1f24e55956a434fcbffa78c

Polyadenylated versions of small non-coding RNAs in Saccharomyces cerevisiae are degraded by Rrp6p/Rrp47p independent of the core nuclear exosome

Authors: Anusha Chaudhuri, Soumita Paul, Mayukh Banerjea, Biswadip Das

Source: Microbial Cell, Vol 11, Pp 155-186 (2024)

Subject Terms: rrna, snorna, snrna, nuclear exosome, rrp6p, rrp47p, mpp6p, nuclear rna turnover, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://microbialcell.com/researcharticles/2024a-chaudhuri-microbial-cell/; https://doaj.org/toc/2311-2638

Access URL: https://doaj.org/article/5f5ae54a84e24023843797e2aeaca3b7

Decoding the molecular script of 2′-O-ribomethylation: Implications across CNS disorders

Authors: Verma, Anuj K., Roy, Bhaskar, Dwivedi, Yogesh ^⁎

Source: In Heliyon 15 November 2024 10(21)

SURFr: Algorithm for identification and analysis of ncRNA-derived RNAs

Authors: Kasukurthi, Mohan Vamsi, Zhang, Dihua, Housevera, Mika, Huang, Yulong, Tan, Shaobo, Ma, Bin, Li, Dongqi, Benton, Ryan, Lin, Jingwei, Li, Shengyu, Borchert, Glen M., Huang, Jingshan

Source: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2019 IEEE International Conference on. :1504-1507 Nov, 2019

Relation: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Maturation of small nucleolar RNAs: from production to function

Authors: Sarah F. Webster, Homa Ghalei

Source: RNA Biology, Vol 20, Iss 1, Pp 715-736 (2023)

Subject Terms: Small nucleolar RNA, snoRNA, snoRNA maturation, snoRNP assembly, non-coding RNA processing, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1547-6286; https://doaj.org/toc/1555-8584

Access URL: https://doaj.org/article/f58ab805ca054f03a76fc3fb0a1df7fc

SNORD3A Regulates STING Transcription to Promote Ferroptosis in Acute Kidney Injury

Authors: Huanhuan Zhu, Junni Wang, Jin Miao, Mingdi Shen, Huijing Wang, Xiaohan Huang, Anqi Ni, Huijuan Wu, Jianghua Chen, Liang Xiao, Shanshan Xie, Weiqiang Lin, Fei Han

Source: Advanced Science, Vol 11, Iss 33, Pp n/a-n/a (2024)

Subject Terms: acute kidney injury, ferroptosis, Snord3a, snoRNA, STING, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2198-3844

Access URL: https://doaj.org/article/b189caafdb194d7fa4b4dd001376a011