Characterization of resistance genes and replicon typing in Carbapenem-resistant Klebsiella pneumoniae strains

Authors: Esin Karaman, Ayşegül Çopur Çiçek, Vicdan Şemen, Fatih Şaban Beriş

Source: Annals of Clinical Microbiology and Antimicrobials, Vol 23, Iss 1, Pp 1-9 (2024)

Subject Terms: K. pneumoniae, Carbapenem resistance, Antibiotic susceptibility, Antibiotic resistance genes, Replicon typing, Therapeutics. Pharmacology, RM1-950, Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1476-0711

Access URL: https://doaj.org/article/496078dcb4304f65bc5bc197bd87637f

Plasmid-based replicon typing: Useful tool in demonstrating the silent pandemic of plasmid-mediated multi-drug resistance in Enterobacterales

Authors: Mahajan, Pooja ^a, Kumar, Mahadevan ^{b, ⁎}, Bhalla, Gurpreet Singh ^c, Tandel, Kundan ^d

Source: In Medical Journal Armed Forces India February 2024

Genetic characterization of multidrug-resistant Escherichia coli harboring colistin-resistant gene isolated from food animals in food supply chain

Authors: Peechanika Chopjitt, Parichart Boueroy, Masatomo Morita, Tetsuya Iida, Yukihiro Akeda, Sihigeyuki Hamada, Anusak Kerdsin

Source: Frontiers in Cellular and Infection Microbiology, Vol 14 (2024)

Subject Terms: colistin-resistant E. col, mcr gene, plasmid replicon typing, foods, IncX4, IncP1, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2024.1289134/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/8452b3f6d82947c48ca5cc896b159553

Plasmid content of carbapenem resistant Acinetobacter baumannii isolates belonging to five International Clones collected from hospitals of Alexandria, Egypt

Authors: Sandra Sánchez-Urtaza, Alain Ocampo-Sosa, Jorge Rodríguez-Grande, Mohammed A. El-Kholy, Sherine M. Shawky, Itziar Alkorta, Lucia Gallego

Source: Frontiers in Cellular and Infection Microbiology, Vol 13 (2024)

Subject Terms: Acinetobacter baumannii, plasmids, replicon typing, antibiotic resistance genes, whole genome sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2023.1332736/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/67541afb6cbf40c2ac1dee75b2eef529

Carbapenemase-Producing Enterobacterales

Contributors: Andreoni, Francesca

Subject Terms: carbapenem resistance, carbapenemase, whole genome sequencing, long reads, plasmid, Klebsiella pneumoniae, extensively drug-resistant, molecular typing, carbapenemases, Enterobacteriales, human, animal, food, environment, carbapenemase-producing Enterobacterales, KPC, carbapenem, multidrug resistance, nosocomial, Enterobacteriaceae, ESBL, resistance genes, cattle, blaOXA-48, ERIC-PCR, plasmid profile analysis, biofilm formation, PCR-based replicon typing, antibiotic-resistance, sequence types, multilocus sequence typing, plasmids, antimicrobial resistance, carbapenem inactivation method, carbapenem-resistant Enterobacterales, real-time multiplex PCR, whole-genome sequencing, carbapenem-resistance, Qatar, CRE, OXA-48, carbapenems resistance, Gram-negative bacteria, infection, colonization, COVID-19, K. pneumoniae, porins, ceftazidime/avibactam, ESKAPE, healthcare-associated infections, antimicrobial peptides, Temporin L, Klebsiella michiganensis, Citrobacter farmeri, KPC-2, plasmid, transposon, carbapenem-resistant Enterobacteriaceae (CRE), outbreak, infection control, pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), IMP-6, porin, efflux pump, nosocomial infections, NDM-1, Fourier transform infrared spectroscopy, Eazyplex® SuperBug CRE assay, extended-spectrum beta-lactamases, gram-negative rods, LAMP method, NDM, VIM, molecular epidemiology, PFGE, Carbapenemase producing Enterobacterales, IncX-3, one health, water, colistin susceptibility testing, broth microdilution, colistin broth disc elution, Vitek 2 compact, rapid polymyxin NP test, Etest, ChromID colistin R agar, micronaut MIC-strip colistin, population analysis profiling, Enterobacterales, neonates, plasmid-typing, sequence type, wastewater, virulence, Research and information: general, Biology, life sciences, Microbiology (non-medical)

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Access URL: https://directory.doabooks.org/handle/20.500.12854/81048
https://mdpi.com/books/pdfview/book/5390

Antimicrobial Resistance and Virulence Mechanisms

Contributors: Oliveira, Manuela

Subject Terms: MRSA, EMRSA-15, MLSB, bacteremia, bloodstream infections, antibiotic resistance, aquatic contamination, probabilistic sampling, San Francisco Estuary, coast, Pseudomonas, Shewanella algae, Vibrio parahaemolyticus, biocide, Listeria monocytogenes, biofilm, planktonic culture, pulsed-field gel electrophoresis, Escherichia coli, fosfomycin, nitrofurantoin, antimicrobial resistance, antibiotic susceptibility, WGS, phylogenetic analysis, DNA mismatch repair system, Salmonella Choleraesuis, Iberian pig, wild boar, phylogenetic relationship, plasmid replicon typing, colistin, carcass, cfr gene, fexA gene, linezolid, mutation, pig, public health, S. aureus, avian colibacillosis, salmonellosis, MDR, tetA, nisin, mutant prevention concentration, mutant selection window, antimicrobial susceptibility testing, horizontal gene transfer, Salmonella, reptiles, isolation, biofilms, chlorhexidine gluconate, wounds, Gram-negative bacteria, colonization, infection, clonal lineages, resistance genes, virulence factors, Staphylococcus aureus, skin and soft-tissue infections, plasmids, Panton–Valentine leucocidin, Research and information: general, Biology, life sciences, Microbiology (non-medical)

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Access URL: https://directory.doabooks.org/handle/20.500.12854/80992
https://mdpi.com/books/pdfview/book/5333

DEVELOPMENT AND PILOT VALIDATION OF A NOVEL PCR-BASED REPLICON TYPING SCHEME FOR PLASMID FAMILIES ASSOCIATED WITH ANTIBIOTIC RESISTANCE IN PSEUDOMONAS SPP.

Authors: Ivan Stoikov, Ivan Ivanov, Elina Dobreva, Deyan Donchev, Stefana Sabtcheva, Rumyana Hristova

Source: Problems of Infectious and Parasitic Diseases, Vol 51, Iss 1 (2023)

Subject Terms: Pseudomonas, PCR-based replicon typing (PBRT), resistance, plasmids, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://pipd.ncipd.org/index.php/pipd/article/view/102; https://doaj.org/toc/0204-9155; https://doaj.org/toc/2815-2808

Access URL: https://doaj.org/article/cc9f16a62eb047bab70b9d1c33daa96e

Prevalence of colistin resistance gene mcr-1 in Escherichia coli isolated from chickens in central China, 2014 to 2019

Authors: Wenting Zhang, Tengfei Zhang, Chen Wang, Guixing Liang, Qin Lu, Guoyuan Wen, Yunqing Guo, Yiluo Cheng, Zui Wang, Huabin Shao, Qingping Luo

Source: Journal of Global Antimicrobial Resistance, Vol 29, Iss , Pp 241-246 (2022)

Subject Terms: mcr-1, Escherichia coli, Colistin resistance, Poultry, MLST, Plasmid replicon typing, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213716522000789; https://doaj.org/toc/2213-7165

Access URL: https://doaj.org/article/0c8689aaf5ea404d9ced1d30315c5821

Plasmid Replicon Diversity of Clinical Uropathogenic Escherichia coli Isolates from Riyadh, Saudi Arabia

Authors: Abdulaziz Alangari, Ahmad Abu Jaffal, Naif Almutairi, Abdullah A. Alyousef

Source: Journal of Pure and Applied Microbiology, Vol 16, Iss 1, Pp 540-548 (2022)

Subject Terms: plasmid, replicon typing, e. coli, esbl, st131, h30, Microbiology, QR1-502

File Description: electronic resource

Relation: https://microbiologyjournal.org/plasmid-replicon-diversity-of-clinical-uropathogenic-escherichia-coli-isolates-from-riyadh-saudi-arabia/; https://doaj.org/toc/0973-7510; https://doaj.org/toc/2581-690X

Access URL: https://doaj.org/article/cff607c8f1a348a397a12b71d3131742

Classification and molecular characteristics of tet(X)-carrying plasmids in Acinetobacter species

Authors: Chong Chen, Ping-Yu Huang, Chao-Yue Cui, Qian He, Jian Sun, Ya-Hong Liu, Jin-Lin Huang

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: Acinetobacter species, mobile tigecycline resistance, tet(X), replicon typing, GR31 plasmid, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.974432/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/c6cec92f41ee47d29a22d50cc842001a

Microbial Genetics and Clonal Dissemination of Salmonella enterica Serotype Javiana Isolated from Human Populations in Arkansas, USA

Authors: Yasser M. Sanad, Nesreen H. Aljahdali, Bijay K. Khajanchi, Rajesh Nayak, Ashraf Khan, Steven L. Foley

Source: Pathogens, Vol 11, Iss 10, p 1192 (2022)

Subject Terms: Salmonella Javiana, antimicrobial resistance, pulsed-field gel electrophoresis (PFGE), replicon typing, molecular typing, whole genome sequencing (WGS), Medicine

File Description: electronic resource

Relation: https://www.mdpi.com/2076-0817/11/10/1192; https://doaj.org/toc/2076-0817

Access URL: https://doaj.org/article/db0a7675b8d6422d8fe72b3629a41226

Characterization of Plasmids in Multidrug Resistant Uropathogenic Gram-negative Bacterial Isolates

Authors: Manish Ranjan, Mahadevan Kumar, Sourav Sen, Parijat Das, Kunal Kanti Lahiri

Source: Journal of Clinical and Diagnostic Research, Vol 15, Iss 6, Pp DC01-DC04 (2021)

Subject Terms: conjugation, multidrug resistance, polymerase chain reaction, plasmids, replicon typing, Medicine

File Description: electronic resource

Relation: https://www.jcdr.net/articles/PDF/14950/48356_CE[Ra]_F(Sh)_PF1_(AKA_IK)_PN(KM).pdf; https://doaj.org/toc/2249-782X; https://doaj.org/toc/0973-709X

Access URL: https://doaj.org/article/8b9eb3c2f1ed4f2983b3b9a238d3b21c

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids

Authors: Pierre-Emmanuel Douarre, Ludovic Mallet, Nicolas Radomski, Arnaud Felten, Michel-Yves Mistou

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: plasmid database, host range, replicon typing, MOB typing, plasmid mobility, multireplicon, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.00483/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/a967cf0ac7f34559a715709f33f3da75

Carriage of Carbapenem-Resistant Enterobacterales in Adult Patients Admitted to a University Hospital in Italy

Authors: Pamela Barbadoro, Daniela Bencardino, Elisa Carloni, Enrica Omiccioli, Elisa Ponzio, Rebecca Micheletti, Giorgia Acquaviva, Aurora Luciani, Annamaria Masucci, Antonella Pocognoli, Francesca Orecchioni, Marcello Mario D’Errico, Mauro Magnani, Francesca Andreoni

Source: Antibiotics, Vol 10, Iss 1, p 61 (2021)

Subject Terms: Enterobacteriaceae, PCR-based replicon typing, antibiotic-resistance, sequence types, multilocus sequence typing, plasmids, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/10/1/61; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/52e77ce7c2f444e9a24c877e2d7e3df3

Antimicrobial Resistance Traits of Escherichia coli Isolated from Dairy Manure and Freshwater Ecosystems Are Similar to One Another but Differ from Associated Clinical Isolates

Authors: Rachelle E. Beattie, Ellen Bakke, Nicholas Konopek, Rebecca Thill, Erik Munson, Krassimira R. Hristova

Source: Microorganisms, Vol 8, Iss 5, p 747 (2020)

Subject Terms: antimicrobial resistance, ESBL, One Health, E. coli, phylotyping, plasmid replicon typing, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/8/5/747; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/de8dd22b94494355b08e5006b74db43c

IncHI2 Plasmids Are Predominant in Antibiotic-Resistant Salmonella Isolates

Authors: Wenyao Chen, Tingzi Fang, Xiujuan Zhou, Dao-Feng Zhang, Xianming Shi, Chunlei Shi

Source: Frontiers in Microbiology, Vol 7 (2016)

Subject Terms: Salmonella, antibiotic resistance, replicon typing, plasmid sequencing, Plasmid curing, IncHI2, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.01566/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/92f4dc721952430eb28681457b6809d7

Replicon Typing of Plasmids Encoding Resistance to Newer β-Lactams

Authors: Alessandra Carattoli, Vivi Miriagou, Alessia Bertini, Alexandra Loli, Celine Colinon, Laura Villa, Jean M. Whichard, Gian Maria Rossolini

Source: Emerging Infectious Diseases, Vol 12, Iss 7, Pp 1145-1148 (2006)

Subject Terms: β-Lactam resistance, plasmid, replicon typing, dispatch, United States, Italy, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/12/7/05-1555_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/f86bd21d33314207b8a80c8be599011a

The contribution of Escherichia coli from human and animal sources to the integron gene pool in coastal waters

Authors: Alexandra eMoura, Susana eAraújo, Marta eAlves, Isabel eHenriques, Anabela ePereira, Antonio CM Correia

Source: Frontiers in Microbiology, Vol 5 (2014)

Subject Terms: replicon typing, environmental reservoirs, microbial risk assessment, multi-resistance, integron diversity, Enterobacteriaceae., Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fmicb.2014.00419/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/d72668ccdc574bfbb0afc2cba7db9dfb

Molecular characterisation of blaESBL-harbouring conjugative plasmids identified in multi-drug resistant Escherichia coli isolated from food-producing animals and healthy humans

Authors: Juan eWang, Roger eStephan, Maria eKarczmarczyk, Qiongqiong eYan, Herbert eHächler, Seamus eFanning

Source: Frontiers in Microbiology, Vol 4 (2013)

Subject Terms: Plasmids, E. coli, conjugation, horizontal gene transfer, ESBLs, replicon typing, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fmicb.2013.00188/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/b5bebd9ad5364510ba72422946d40157

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