Plastid phylogenomics of Robinsonia (Senecioneae; Asteraceae), endemic to the Juan Fernández Islands: insights into structural organization and molecular evolution

Authors: Myong-Suk Cho, JiYoung Yang, Seon-Hee Kim, Daniel J. Crawford, Tod F. Stuessy, Patricio López-Sepúlveda, Seung-Chul Kim

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-17 (2024)

Subject Terms: Adaptive radiation, Asteraceae, Critically endangered, Insular woodiness, Juan Fernández Islands, Plastome evolution, Botany, QK1-989

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Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/113ec29da13c4772a614de4af5e048a2

Comparative analysis of chloroplast genomes and phylogenetic relationships in the endemic Chinese bamboo Gelidocalamus (Bambusoideae)

Authors: Chengkun Wang, Yonglong Li, Guangyao Yang, Wengen Zhang, Chunce Guo

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: Gelidocalamus Wen, phylogenetic relationships, plastome evolution, molecular markers, divergence times, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1470311/full; https://doaj.org/toc/1664-462X

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The plastid genome of twenty-two species from Ferula, Talassia, and Soranthus: comparative analysis, phylogenetic implications, and adaptive evolution

Authors: Huan-Huan Qin, Jing Cai, Chang-Kun Liu, Ren-Xiu Zhou, Megan Price, Song-Dong Zhou, Xing-Jin He

Source: BMC Plant Biology, Vol 23, Iss 1, Pp 1-18 (2023)

Subject Terms: Apiaceae, Ferula, Talassia and Soranthus, Plastome evolution, DNA barcoding, Phylogenetic relationships, Botany, QK1-989

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Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/407b3b25c56940e887999c583933ea7f

Structural and evolutive features of the Plinia phitrantha and P. cauliflora plastid genomes and evolutionary relationships within tribe Myrteae (Myrtaceae)

Authors: Machado, Lilian de Oliveira, Stefenon, Valdir Marcos, Vieira, Leila do Nascimento, Nodari, Rubens Onofre

Source: Genetics and Molecular Biology. January 2022 45(1)

Subject Terms: Jaboticaba, phylogenomic analysis, plastome evolution

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Access URL: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572022000100304

Plastome evolution and phylogenomics of Trichosporeae (Gesneriaceae) with its morphological characters appraisal

Authors: Yan-Fang Cui, Peng Zhou, Kun-Li Xiang, Qiang Zhang, Hua Yan, Li-Guo Zhang, Bo Pan, Yu-Song Huang, Zhi-You Guo, Zhen-Yu Li, Xiao-Guo Xiang

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: Gesneriaceae, Hemiboea, molecular markers, phylogenomics, plastome evolution, Trichosporeae, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1160535/full; https://doaj.org/toc/1664-462X

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Towards the plastome evolution and phylogeny of Cycas L. (Cycadaceae): molecular-morphology discordance and gene tree space analysis

Authors: Jian Liu, Anders J. Lindstrom, Xun Gong

Source: BMC Plant Biology, Vol 22, Iss 1, Pp 1-15 (2022)

Subject Terms: Cycads, Cycas, Gene tree discordance, Plastid phylogenomics, Plastome evolution, Botany, QK1-989

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Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/41ea360ae2f849cd8b4c4572c99719b5

The complete plastomes of seven Peucedanum plants: comparative and phylogenetic analyses for the Peucedanum genus

Authors: Chang-Kun Liu, Jia-Qing Lei, Qiu-Ping Jiang, Song-Dong Zhou, Xing-Jin He

Source: BMC Plant Biology, Vol 22, Iss 1, Pp 1-14 (2022)

Subject Terms: Apiaceae, Peucedanum, Plastome evolution, Phylogenomics, DNA barcoding, Botany, QK1-989

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Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/452edb269bac454ba917b77db9f00593

New insights into the phylogenetic relationships among wild onions (Allium, Amaryllidaceae), with special emphasis on the subgenera Anguinum and Rhizirideum, as revealed by plastomes

Authors: JiYoung Yang, Seon-Hee Kim, Hee-Young Gil, Hyeok-Jae Choi, Seung-Chul Kim

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: Allium ulleungense, Allium dumebuchum, Ulleung Island, plastome evolution, infrageneric classification, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1124277/full; https://doaj.org/toc/1664-462X

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Phylogenomics and phylogeography of Menispermum (Menispermaceae)

Authors: Shiqiang Song, Kenneth M. Cameron, Yuguo Wang, Shenyi Wang, Xinjie Jin, Faiza Hina, Zhaoping Yang, Pan Li

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: disjunct distribution, Menispermaceae, plastome evolution, phylogeny, systematic, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1116300/full; https://doaj.org/toc/1664-462X

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Extensive genomic rearrangements mediated by repetitive sequences in plastomes of Medicago and its relatives

Authors: Shuang Wu, Jinyuan Chen, Ying Li, Ai Liu, Ao Li, Mou Yin, Nawal Shrestha, Jianquan Liu, Guangpeng Ren

Source: BMC Plant Biology, Vol 21, Iss 1, Pp 1-16 (2021)

Subject Terms: Medicago, Trigonella, Melilotus, IRLC, Plastome evolution, Genomic rearrangement, Botany, QK1-989

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Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/ed7781ac89904dfdb3966e858b297f7e

Phylogenomic and evolutionary dynamics of inverted repeats across Angelica plastomes

Authors: Mengli Wang, Xin Wang, Jiahui Sun, Yiheng Wang, Yang Ge, Wenpan Dong, Qingjun Yuan, Luqi Huang

Source: BMC Plant Biology, Vol 21, Iss 1, Pp 1-12 (2021)

Subject Terms: Angelica, Plastome evolution, Phylogenomic, Inverted repeats, Botany, QK1-989

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Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/9ffb7b6296144be3839a102f0f1196cc

Plastid Phylogenomics and Plastome Evolution of Nandinoideae (Berberidaceae)

Authors: Shiqiang Song, Dmitriy Zubov, Hans Peter Comes, Haiwen Li, Xuelian Liu, Xin Zhong, Joongku Lee, Zhaoping Yang, Pan Li

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: Caulophyllum, Gymnospermium, Leontice, North America-Eurasia disjunction, phylogenomics, plastome evolution, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.913011/full; https://doaj.org/toc/1664-462X

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Putting small and big pieces together: a genome assembly approach reveals the largest Lamiid plastome in a woody vine

Authors: Luiz Henrique M. Fonseca, Alison G. Nazareno, Verônica A. Thode, Alexandre R. Zuntini, Lúcia G. Lohmann

Source: PeerJ, Vol 10, p e13207 (2022)

Subject Terms: Bignonia magnifica, Inverted repeats (IRs), Plastome evolution, Short- and long-reads sequencing, Medicine, Biology (General), QH301-705.5

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Relation: https://peerj.com/articles/13207.pdf; https://peerj.com/articles/13207/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/af72efa768a3494fb4c2e99741f6093d

Structural and evolutive features of the Plinia phitrantha and P. cauliflora plastid genomes and evolutionary relationships within tribe Myrteae (Myrtaceae)

Authors: Lilian de Oliveira Machado, Valdir Marcos Stefenon, Leila do Nascimento Vieira, Rubens Onofre Nodari

Source: Genetics and Molecular Biology, Vol 45, Iss 1 (2022)

Subject Terms: Jaboticaba, phylogenomic analysis, plastome evolution, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572022000100304&tlng=en; https://doaj.org/toc/1678-4685

Access URL: https://doaj.org/article/bfce40811e974387b64ae3982af30c7b

Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida)

Authors: Hong-Rui Zhang, Xian-Chun Zhang, Qiao-Ping Xiang

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-11 (2019)

Subject Terms: direct repeat, inversion, inverted repeat, plastome evolution, short dispersed repeats, Biotechnology, TP248.13-248.65, Genetics, QH426-470

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Relation: http://link.springer.com/article/10.1186/s12864-019-5843-6; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/85508be2a6054790948346c24b979dda

Evidence from Phylogenomics and Morphology Provide Insights into the Phylogeny, Plastome Evolution, and Taxonomy of Kitagawia

Authors: Jia-Qing Lei, Chang-Kun Liu, Jing Cai, Megan Price, Song-Dong Zhou, Xing-Jin He

Source: Plants, Vol 11, Iss 23, p 3275 (2022)

Subject Terms: Kitagawia, Peucedanum, Apiaceae, morphology, phylogeny, plastome evolution, Botany, QK1-989

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Relation: https://www.mdpi.com/2223-7747/11/23/3275; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/45f79d5cdf69439da8041a54c2bb2275

Highly Diverse Shrub Willows (Salix L.) Share Highly Similar Plastomes

Authors: Natascha D. Wagner, Martin Volf, Elvira Hörandl

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: Chamaetia/Vetrix clade, Eurasia, genome skimming, North America, phylogenomics, plastome evolution, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.662715/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/31db6a1b04f24343bbfe20c9a36d941f

Comparative Plastomes and Phylogenetic Analysis of Cleistogenes and Closely Related Genera (Poaceae)

Authors: Rong Wang, Kuan Liu, Xue-Jie Zhang, Wen-Li Chen, Xiao-Jian Qu, Shou-Jin Fan

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: Cleistogenes, comparative genomics, plastome evolution, molecular marker, phylogenetic relationships, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.638597/full; https://doaj.org/toc/1664-462X

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Extremely low nucleotide diversity among thirty-six new chloroplast genome sequences from Aldama (Heliantheae, Asteraceae) and comparative chloroplast genomics analyses with closely related genera

Authors: Benoit Loeuille, Verônica Thode, Carolina Siniscalchi, Sonia Andrade, Magdalena Rossi, José Rubens Pirani

Source: PeerJ, Vol 9, p e10886 (2021)

Subject Terms: Complete plastome, Compositae, ycf2 gene, rbcL positive selection, Species-level plastome evolution, Medicine, Biology (General), QH301-705.5

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Relation: https://peerj.com/articles/10886.pdf; https://peerj.com/articles/10886/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/05ac0769d3344b39958852fe00b49d6d

Plastid Phylogenomics of Dendroseris (Cichorieae; Asteraceae): Insights Into Structural Organization and Molecular Evolution of an Endemic Lineage From the Juan Fernández Islands

Authors: Myong-Suk Cho, Seon-Hee Kim, JiYoung Yang, Daniel J. Crawford, Tod F. Stuessy, Patricio López-Sepúlveda, Seung-Chul Kim

Source: Frontiers in Plant Science, Vol 11 (2020)

Subject Terms: Asteraceae, adaptive radiation, plastome evolution, insular woodiness, Juan Fernández Islands, critically endangered, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2020.594272/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/083a48f23fa1404eae5c994ff9d4cf34