The complete chloroplast genome of Typha angustifolia and its phylogenetic position in Typhaceae

Authors: Weiwei Lv, Jiayi Qian, Qian Long, Songting Wang

Source: Mitochondrial DNA. Part B. Resources, Vol 9, Iss 8, Pp 1034-1038 (2024)

Subject Terms: Typha angustifolia, Typhaceae, chloroplast genome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/9cca3735e8f746c3a1ca3daae4c58aa8

Characteristics and phylogenetic analysis of the complete mitochondrial genome of Erasmia pulchella Hope, 1840 (lepidoptera: zygaenidae)

Authors: Jihui Zhang, Dandan Zhao, Zhenxing Ma

Source: Mitochondrial DNA. Part B. Resources, Vol 9, Iss 2, Pp 281-284 (2024)

Subject Terms: Erasmia pulchella, zygaenidae, mitogenome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/74b491f0ee2a4e7d870cebd30ddf3b99

EasyCGTree: a pipeline for prokaryotic phylogenomic analysis based on core gene sets

Authors: Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao

Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-12 (2023)

Subject Terms: Phylogeny inference, Supermatrix, Supertree, Prokaryote taxonomy, Core gene, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/be9379c3ce66487d9a923e6668670325

CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples

Authors: Bingxin Lu, Kit Curtius, Trevor A. Graham, Ziheng Yang, Chris P. Barnes

Source: Genome Biology, Vol 24, Iss 1, Pp 1-28 (2023)

Subject Terms: Phylogeny inference, Copy number alteration, Maximum likelihood, Model of evolution, Low-coverage sequencing, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/5e78e58832ea49fca3b1f1cb351c076f

Characterization of the complete chloroplast genome of Veronica arvensis and its phylogenomic inference in plantaginaceae

Authors: Huabing Liu, Wenmiao He, Xiaobing Zhang, Zhimin Jiang, Qi Li, Chen Xia, Hui Wang

Source: Mitochondrial DNA. Part B. Resources, Vol 7, Iss 11, Pp 1928-1932 (2022)

Subject Terms: veronica arvensis, plastid genome, plantaginaceae, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/e0070e7c3cc442aebc43b3878e640bf7

Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae)

Authors: Ranran Yang, Rui Li, Meifang Dong, Luxian Liu

Source: Mitochondrial DNA. Part B. Resources, Vol 7, Iss 5, Pp 741-743 (2022)

Subject Terms: peltoboykinia tellimoides, saxifragaceae, chloroplast genome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/300071f4fd4a4d009ed8a7dd51314d3b

Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae

Authors: Hao Si, Rui Li, Qingde Zhang, Luxian Liu

Source: Mitochondrial DNA. Part B. Resources, Vol 7, Iss 5, Pp 819-821 (2022)

Subject Terms: plantago asiatica, chloroplast genome, genome skimming, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/4a121c2207d94641b8bab605390f4ad8

DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing

Authors: Zilu Zhou, Bihui Xu, Andy Minn, Nancy R. Zhang

Source: Genome Biology, Vol 21, Iss 1, Pp 1-15 (2020)

Subject Terms: Single-cell RNA sequencing, Intratumor heterogeneity, Cancer genomics, Phylogeny inference, Multi-omics analysis, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/89b2cd761e88427695dcdbf7df96a351

The complete chloroplast genome sequence of Zelkova sinica and phylogenetic implications in Rosales

Authors: Xinyi Liu, Rui Li, Shuyun Wang, Luxian Liu

Source: Mitochondrial DNA. Part B. Resources, Vol 6, Iss 11, Pp 3154-3155 (2021)

Subject Terms: zelkova sinica, genome skimming, chloroplast genome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/70d6931ca4444b67a9836f4d98c1b743

Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing

Authors: Jiang, Yuchao, Qiu, Yu, Minn, Andy J., Zhang, Nancy R.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2016 Sep . 113(37), E5528-E5537.

Access URL: https://www.jstor.org/stable/26471816

Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach

Authors: Oleksandr Holovachov

Source: Biodiversity Data Journal, Vol 4, Iss , Pp 1-35 (2016)

Subject Terms: Nematoda, metabarcoding, alignment, phylogeny inference, taxonomy assignment, 18S rRNA, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://bdj.pensoft.net/articles.php?id=10021; http://bdj.pensoft.net/lib/ajax_srv/article_elements_srv.php?action=download_pdf&item_id=10021; http://bdj.pensoft.net/lib/ajax_srv/article_elements_srv.php?action=download_xml&item_id=10021; https://doaj.org/toc/1314-2836; https://doaj.org/toc/1314-2828

Access URL: https://doaj.org/article/2850d7b44f2145b18c54c90b05d8b222

The complete chloroplast genome sequence of purple mullein (Verbascum phoeniceum L.)

Authors: Yuqian Bi, Pan Deng, Luxian Liu

Source: Mitochondrial DNA. Part B. Resources, Vol 5, Iss 1, Pp 819-820 (2020)

Subject Terms: purple mullein, chloroplast genome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/7810535a356447f3aaf612dcff772341

Complete chloroplast genome of Trophis caucana and its phylogenetic implication in Rosales

Authors: Pan Deng, Nianyi Sun, Luxian Liu

Source: Mitochondrial DNA. Part B. Resources, Vol 5, Iss 1, Pp 758-759 (2020)

Subject Terms: trophis caucana, chloroplast genome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/99f493f211ad42fc99ebac33c3ded0c7

Complete chloroplast genome of Lycium ferocissimum (Solanaceae), a species native to South Africa

Authors: Zhao Li, Xinyi Zhang, Qingde Zhang, Gulbar Yisilam

Source: Mitochondrial DNA. Part B. Resources, Vol 5, Iss 1, Pp 756-757 (2020)

Subject Terms: lycium ferocissimum, chloroplast genome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/b45ebeb08fa84b9faa82aafa9577477b

Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae

Authors: Yingxue Du, Rui Li, Qingde Zhang

Source: Mitochondrial DNA. Part B. Resources, Vol 4, Iss 2, Pp 3083-3084 (2019)

Subject Terms: osmanthus armatus, plastome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/77740b4ed81046b7acf6718922ca707e

The complete chloroplast genome of Crossostephium chinense (Asteraceae), using genome skimming data

Authors: Tingting Chen, Yingxue Du, Haodi Zhao, Meifang Dong, Luxian Liu

Source: Mitochondrial DNA. Part B. Resources, Vol 4, Iss 1, Pp 322-323 (2019)

Subject Terms: crossostephium chinense, complete chloroplast genome, genome skimming, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/71a12730eeff4a348c7067900245725a

The complete chloroplast genome of Leontice incerta and phylogeny of Berberidaceae

Authors: Peizi He, Qing Ma, Meifang Dong, Zhaoping Yang, Luxian Liu

Source: Mitochondrial DNA. Part B. Resources, Vol 4, Iss 1, Pp 101-102 (2019)

Subject Terms: genome skimming, gymnospermium, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/f55a98b73b564fc08c4ac0afc083303e

The complete chloroplast genome of Paulownia elongata and phylogenetic implications in Lamiales

Authors: Haodi Zhao, Rui Li, Fude Shang

Source: Mitochondrial DNA. Part B. Resources, Vol 4, Iss 1, Pp 2067-2068 (2019)

Subject Terms: paulownia elongata, chloroplast genome, phylogeny inference, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/eae2989047794df9a0a39f6bc791e4b9

Assessing the Applicability of the GTR Nucleotide Substitution Model Through Simulations

Authors: Michel C. Milinkovitch, Laurent Gatto, Daniele Catanzaro

Source: Evolutionary Bioinformatics, Vol 2, Pp 145-155 (2006)

Subject Terms: GTR model, simulations, nucleotide substitution, homogeneity, phylogeny inference, Evolution, QH359-425

File Description: electronic resource

Relation: http://la-press.com/article.php?article_id=145; https://doaj.org/toc/1176-9343

Access URL: https://doaj.org/article/d0dbc5689d954f31a37ee3596599a859

Evolution of Brown Towhees: Mitochondrial DNA Evidence

Authors: Zink, Robert M., Dittmann, Donna L.

Source: The Condor, 1991 Feb 01. 93(1), 98-105.

Access URL: https://www.jstor.org/stable/1368611