Biochemical characterization of the Escherichia coli surfaceome: a focus on type I fimbriae and flagella

Authors: Devon W. Kavanaugh, Adeline Sivignon, Yannick Rossez, Zina Chouit, Christophe Chambon, Louane Béal, Mathilde Bonnet, Michel Hébraud, Yann Guérardel, Hang Thi Thu Nguyen, Nicolas Barnich

Source: Frontiers in Microbiology, Vol 16 (2025)

Subject Terms: type I fimbriae, flagella, post-translational modification, pathobiont, glycobiology, structural characterization, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2025.1507286/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/27677614f7ff4331bd069ac644113eb5

Targeting microbial pathogenic mechanisms as a novel therapeutic strategy in IBD

Authors: Paul F. Miller

Source: Molecular Medicine, Vol 30, Iss 1, Pp 1-9 (2024)

Subject Terms: Pathobiont, Dysbiosis, Pathogenesis, IBD, Microbiota, Mycobiota, Therapeutics. Pharmacology, RM1-950, Biochemistry, QD415-436

File Description: electronic resource

Relation: https://doaj.org/toc/1528-3658

Access URL: https://doaj.org/article/dcb6f0d9e45c463f85b3f95f376adac8

Metabolic network of the gut microbiota in inflammatory bowel disease

Authors: Kohei Sugihara, Nobuhiko Kamada

Source: Inflammation and Regeneration, Vol 44, Iss 1, Pp 1-11 (2024)

Subject Terms: Gut microbiota, IBD, Pathobiont, AIEC, Metabolic network, Pathology, RB1-214

File Description: electronic resource

Relation: https://doaj.org/toc/1880-8190

Access URL: https://doaj.org/article/ac33f93879044e9ab0271689e7d73468

Diet prevents the expansion of segmented filamentous bacteria and ileo-colonic inflammation in a model of Crohn’s disease

Authors: Amira Metwaly, Jelena Jovic, Nadine Waldschmitt, Sevana Khaloian, Helena Heimes, Deborah Häcker, Mohamed Ahmed, Nassim Hammoudi, Lionel Le Bourhis, Aida Mayorgas, Kolja Siebert, Marijana Basic, Tobias Schwerd, Matthieu Allez, Julian Panes, Azucena Salas, André Bleich, Sebastian Zeissig, Pamela Schnupf, Fabio Cominelli, Dirk Haller

Source: Microbiome, Vol 11, Iss 1, Pp 1-21 (2023)

Subject Terms: Crohn’s disease, Segmented filamentous bacteria, Purified diet, Tnf ΔARE mice, Inflammation, Pathobiont, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/160bf4e0935a4c559e27d044a98b7180

Comparative analysis of the red-complex organisms and recently identified periodontal pathogens in the subgingival plaque of diabetic and nondiabetic patients with severe chronic periodontitis

Authors: Divya Shree Pandian, Dhayanad John Victor, Priyanka Cholan, P SG Prakash, Sangeetha Subramanian, Sumi Priyadarshini Shankar

Source: Journal of Indian Society of Periodontology, Vol 27, Iss 1, Pp 51-56 (2023)

Subject Terms: filifactor alocis, fretibacterium fastidiosum, keystone pathogen, pathobiont, red-complex organisms, Dentistry, RK1-715

File Description: electronic resource

Relation: http://www.jisponline.com/article.asp?issn=0972-124X;year=2023;volume=27;issue=1;spage=51;epage=56;aulast=Pandian; https://doaj.org/toc/0972-124X

Access URL: https://doaj.org/article/bc6812f609d34cc39873204f39032f49

Association of nine pathobionts with periodontitis in four South American and European countries

Authors: Gerard Àlvarez, Alexandre Arredondo, Sergio Isabal, Wim Teughels, Isabelle Laleman, María José Contreras, Lorena Isbej, Enrique Huapaya, Gerardo Mendoza, Carolina Mor, José Nart, Vanessa Blanc, Rubén León

Source: Journal of Oral Microbiology, Vol 15, Iss 1 (2023)

Subject Terms: Bacterial load, biomarker, pathobiont, prevalence, quantitative PCR, species specificity, Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2000-2297

Access URL: https://doaj.org/article/ea1037b15d624c82ab7add927e49fffe

Butyrate reduces adherent-invasive E. coli-evoked disruption of epithelial mitochondrial morphology and barrier function: involvement of free fatty acid receptor 3

Authors: Samira A. Hamed, Armaan Mohan, Saranya Navaneetha Krishnan, Arthur Wang, Marija Drikic, Nicole L. Prince, Ian A. Lewis, Jane Shearer, Åsa V. Keita, Johan D. Söderholm, Timothy E. Shutt, Derek M. McKay

Source: Gut Microbes, Vol 15, Iss 2 (2023)

Subject Terms: Pathobiont, mitochondrial dynamics, gut epithelium, organoid, T84 cells, permeability, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/4210087e373c4f0c8ae7f8feeb913bb8

Characterization of the human gut virome in metabolic and autoimmune diseases

Authors: Kosuke Fujimoto, Daichi Miyaoka, Satoshi Uematsu

Source: Inflammation and Regeneration, Vol 42, Iss 1, Pp 1-6 (2022)

Subject Terms: Microbiome, Bacteriome, Virome, Bacteriophage, Dysbiosis, Pathobiont, Pathology, RB1-214

File Description: electronic resource

Relation: https://doaj.org/toc/1880-8190

Access URL: https://doaj.org/article/884e4e23b6fa4e3c84d7652d4a407a58

Editorial: Ecology, environment, and human microbiome interaction with infection

Authors: Yukiko Koizumi, Fumito Maruyama

Source: Frontiers in Public Health, Vol 11 (2023)

Subject Terms: eco epidemiology, human microbiome, biotic-abiotic interaction with infection pathobiont, dysbiosis, One Health, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpubh.2023.1217927/full; https://doaj.org/toc/2296-2565

Access URL: https://doaj.org/article/81a3b07394ff488d8aef4bff99f1fbeb

Die Kämpfe únd schláchten—the struggles and battles of innate-like effector T lymphocytes with microbes

Authors: Sebastian Joyce, Gosife Donald Okoye, John P. Driver

Source: Frontiers in Immunology, Vol 14 (2023)

Subject Terms: NKT (natural killer T) cell, MAIT (mucosal-associated invariant T) cell, innate-like effector lymphocyte, symbionts, pathobiont, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2023.1117825/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/8fabdf8613ed49518612798e8abc912b

Adherent-invasive E. coli – induced specific IgA limits pathobiont localization to the epithelial niche in the gut

Authors: Rika Tanaka, Jin Imai, Hitoshi Tsugawa, Karl Bil Eap, Masaki Yazawa, Motoki Kaneko, Masashi Ohno, Kohei Sugihara, Sho Kitamoto, Hiroko Nagao-Kitamoto, Nicolas Barnich, Masashi Matsushima, Takayoshi Suzuki, Tatehiro Kagawa, Yasuhiro Nishizaki, Hidekazu Suzuki, Nobuhiko Kamada, Katsuto Hozumi

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: inflammatory bowel disease, Crohn’s disease, host-pathogen interaction, IgA, adherent invasive E coli, pathobiont, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1031997/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/bdfef7b8bffb42bdafe3be6e4e880eba

Dysbiosis by Eradication of Helicobacter pylori Infection Associated with Follicular Gastropathy and Pangastropathy

Authors: Uriel Gomez-Ramirez, Carolina G. Nolasco-Romero, Araceli Contreras-Rodríguez, Gerardo Zuñiga, Sandra Mendoza-Elizalde, Francisco-Javier Prado-Galbarro, Fernando Pérez Aguilar, Jonatan Elihu Pedraza Tinoco, Pedro Valencia-Mayoral, Norma Velázquez-Guadarrama

Source: Microorganisms, Vol 11, Iss 11, p 2748 (2023)

Subject Terms: Cutibacterium acnes, Helicobacter pylori, pathobiont, metagenomics, histopathological evaluation, quantitative real-time polymerase chain reaction, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/11/2748; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/877c357d057548afae842fd330841142

Utilizing a reductionist model to study host-microbe interactions in intestinal inflammation

Authors: Amy M. Tsou, Jeremy A. Goettel, Bin Bao, Amlan Biswas, Yu Hui Kang, Naresh S. Redhu, Kaiyue Peng, Gregory G. Putzel, Jeffrey Saltzman, Ryan Kelly, Jordan Gringauz, Jared Barends, Mai Hatazaki, Sandra M. Frei, Rohini Emani, Ying Huang, Zeli Shen, James G. Fox, Jonathan N. Glickman, Bruce H. Horwitz, Scott B. Snapper

Source: Microbiome, Vol 9, Iss 1, Pp 1-17 (2021)

Subject Terms: Intestinal inflammation, Wiskott-Aldrich syndrome, Immune dysregulation, Gut microbiota, Defined consortium, Pathobiont, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/5dc4ac88ab5f400b9de6cbbeae362a98

The unforeseen intracellular lifestyle of Enterococcus faecalis in hepatocytes

Authors: Natalia Nunez, Aurélie Derré-Bobillot, Nicolas Trainel, Goran Lakisic, Alexandre Lecomte, Françoise Mercier-Nomé, Anne-Marie Cassard, Hélène Bierne, Pascale Serror, Cristel Archambaud

Source: Gut Microbes, Vol 14, Iss 1 (2022)

Subject Terms: Enterococcus faecalis, pathobiont, hepatocytes, intracellular lifestyle, liver, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/4da5d23142594d7dbc2b98bfe5f36104

Prevotella species as oral residents and infectious agents with potential impact on systemic conditions

Authors: Eija Könönen, Dareen Fteita, Ulvi K. Gursoy, Mervi Gursoy

Source: Journal of Oral Microbiology, Vol 14, Iss 1 (2022)

Subject Terms: Prevotella, oral cavity, commensal, pathobiont, pathogen, virulence, Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2000-2297

Access URL: https://doaj.org/article/d95607549645483b8e3651d5ee51d81b

Absence of Bacteria Permits Fungal Gut-To-Brain Translocation and Invasion in Germfree Mice but Ageing Alone Does Not Drive Pathobiont Expansion in Conventionally Raised Mice

Authors: Aimée Parker, Steve A. James, Catherine Purse, Arlaine Brion, Andrew Goldson, Andrea Telatin, David Baker, Simon R. Carding

Source: Frontiers in Aging Neuroscience, Vol 14 (2022)

Subject Terms: Candida albicans, gut-brain, ITS1 sequencing, mycobiome, pathobiont, dementia, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fnagi.2022.828429/full; https://doaj.org/toc/1663-4365

Access URL: https://doaj.org/article/4d9aca07cb524a83a849da60e79ded4a

Molecular Identification of Cervical Microbes in HIV-Negative and HIV-Positive Women in an African Setting Using a Customized Bacterial Vaginosis Microbial DNA Quantitative PCR (qPCR) Array

Authors: Ongeziwe Taku, Harris Onywera, Zizipho Z. A. Mbulawa, Charles B. Businge, Tracy L. Meiring, Anna-Lise Williamson

Source: Microbiology Spectrum, Vol 10, Iss 3 (2022)

Subject Terms: HIV, cervical microbes, bacterial vaginosis (BV), sexually transmitted infection (STI), emerging sexually transmitted pathogen (pathobiont), African women, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/afee3b6a18df4540ac1834d19313afb2

The Inhibitory Effect of Ileal Mucosal Media Originated from FVB/N Mice Strain on Escherichia coli LF82 Invasion

Authors: Hüsamettin AYGÜN, Murat KARAMEŞE, Fikret UYAR

Source: Bezmiâlem Science, Vol 7, Iss 3, Pp 198-203 (2019)

Subject Terms: Escherichia coli LF82, Crohn’s disease, biofilm, pathobiont, adhesion, invasion, Medicine (General), R5-920

File Description: electronic resource

Relation: http://bezmialemscience.org/archives/archive-detail/article-preview/the-nhibitory-effect-of-leal-mucosal-media-origina/28225; https://doaj.org/toc/2148-2373

Access URL: https://doaj.org/article/6d4e0a2b9f894a5f91ebbe9d3bd4edb5

The Cynomolgus Macaque Intestinal Mycobiome Is Dominated by the Kazachstania Genus and K. pintolopesii Species

Authors: Steve A. James, Aimee Parker, Catherine Purse, Andrea Telatin, David Baker, Sandy Holmes, James Durham, Simon G. P. Funnell, Simon R. Carding

Source: Journal of Fungi, Vol 8, Iss 10, p 1054 (2022)

Subject Terms: mycobiome, gastrointestinal tract, cynomolgus macaque, non-human primate, fungi, pathobiont, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2309-608X/8/10/1054; https://doaj.org/toc/2309-608X

Access URL: https://doaj.org/article/4e038bd6dbbc494ebbe3c54542bd2d30

Oral Vaccination Reduces the Effects of Lawsonia intracellularis Challenge on the Swine Small and Large Intestine Microbiome

Authors: Fernando L. Leite, Brittanie Winfield, Elizabeth A. Miller, Bonnie P. Weber, Timothy J. Johnson, Fred Sylvia, Erika Vasquez, Fabio Vannucci, Dana Beckler, Richard E. Isaacson

Source: Frontiers in Veterinary Science, Vol 8 (2021)

Subject Terms: Lawsonia intracellularis, oral vaccine, microbiome, swine, pathobiont, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fvets.2021.692521/full; https://doaj.org/toc/2297-1769

Access URL: https://doaj.org/article/0f93452411744cedab1b53494bbf1d43