A solution to achieve sequencing from SARS-CoV-2 specimens with low viral loads: concatenation of reads from independent reactions

Authors: Alba Cerro-Monje, Sergio Buenestado-Serrano, Rosalía Palomino-Cabrera, Andrea Molero-Salinas, Marta Herranz, Roberto Alonso, Pilar Catalán, Patricia Muñoz, Darío García de Viedma, Laura Pérez-Lago, On behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group

Source: Virology Journal, Vol 21, Iss 1, Pp 1-8 (2024)

Subject Terms: SARS-CoV-2, WGS, Low viral load, Concatenation, Genomics, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1743-422X

Access URL: https://doaj.org/article/c991d570b50746199a46c5e2fee573dc

A mutation responsible for impaired detection by the Xpert SARS-CoV-2 assay independently emerged in different lineages during the SARS-CoV-2 pandemic

Authors: Daniel Peñas-Utrilla, Amadeo Sanz, Pilar Catalán, Cristina Veintimilla, Luis Alcalá, Roberto Alonso, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma, on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group

Source: BMC Microbiology, Vol 23, Iss 1, Pp 1-6 (2023)

Subject Terms: COVID-19, Cepheid Xpert, C29200T, Detection impairment, N gene, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/9848c7397a7e47378170ff7ed5b80e0b

Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involved

Authors: Daniel Peñas-Utrilla, Laura Pérez-Lago, Andrea Molero-Salinas, Agustín Estévez, Amadeo Sanz, Marta Herranz, Carolina Martínez-Laperche, Cristina Andrés-Zayas, Cristina Veintimilla, Pilar Catalán, Roberto Alonso, Patricia Muñoz, Darío García de Viedma, on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group

Source: Genome Medicine, Vol 15, Iss 1, Pp 1-16 (2023)

Subject Terms: SARS-CoV-2, Co-infections, WGS, Segregation, Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1756-994X

Access URL: https://doaj.org/article/aefa5b88d4a74137b06997a4fe89eb1a

Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involved.

Authors: Peñas-Utrilla, Daniel, Pérez-Lago, Laura, Molero-Salinas, Andrea, Estévez, Agustín, Sanz, Amadeo, Herranz, Marta, Martínez-Laperche, Carolina, Andrés-Zayas, Cristina, Veintimilla, Cristina, Catalán, Pilar, Alonso, Roberto, Muñoz, Patricia, García de Viedma, Darío, on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group, Alcalá, Luis, Aldámiz, Teresa, Álvarez-Uría, Ana, Bermúdez, Elena, Bouza, Emilio, Buenestado-Serrano, Sergio

Source: Genome Medicine; 7/24/2023, Vol. 15 Issue 1, p1-16, 16p

Subject Terms: MIXED infections, GENOMICS, SARS-CoV-2, PANDEMICS, SARS-CoV-2 Omicron variant