Predictive Value of dsDNA and Nucleosomes as Neutrophil Extracellular Traps-Related Biomarkers for COVID-19 in Older Patients

Authors: Cui X, Li T, Yang J, Li X, Xuan P, Wang H

Source: Journal of Inflammation Research, Vol Volume 17, Pp 8831-8838 (2024)

Subject Terms: neutrophil extracellular traps, covid-19, pneumonia, dsdna, nucleosomes, older patient., Pathology, RB1-214, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.dovepress.com/predictive-value-of-dsdna-and-nucleosomes-as-neutrophil-extracellular--peer-reviewed-fulltext-article-JIR; https://doaj.org/toc/1178-7031

Access URL: https://doaj.org/article/c122be130600430286d7b0a1bc638648

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage

Authors: Naqvi, Sahin ^{1, 2, 3, 4, 9, ∗}, Kim, Seungsoo ^{1, 5, 8}, Tabatabaee, Saman ^{1, 8}, Pampari, Anusri ⁶, Kundaje, Anshul ^{2, 6}, Pritchard, Jonathan K. ^{2, 7, ∗∗}, Wysocka, Joanna ^{1, 5, ∗∗∗}

Source: In Cell Genomics 12 March 2025 5(3)

Increased plasma nucleosomes are associated with severe sepsis in foals

Authors: Birckhead, E.M. ^⁎, Raidal, S.L., Das, S., Raidal, S.R.

Source: In The Veterinary Journal February 2025 309

The single-molecule accessibility landscape of newly replicated mammalian chromatin

Authors: Ostrowski, Megan S. ^{1, 11}, Yang, Marty G. ^{1, 11}, McNally, Colin P. ^{1, 2}, Abdulhay, Nour J. ^{1, 2}, Wang, Simai ¹, Renduchintala, Keerthi ¹, Irkliyenko, Iryna ¹, Biran, Alva ³, Chew, Brandon T.L. ⁴, Midha, Ayush D. ⁴, Wong, Emily V. ², Sandoval, Jonathan ⁵, Jain, Isha H. ⁴, Groth, Anja ^{3, 6}, Nora, Elphège P. ^{2, 7, 8}, Goodarzi, Hani ^{2, 8, 9, 10}, Ramani, Vijay ^{1, 2, 9, 10, 12, ∗}

Source: In Cell 9 January 2025 188(1):237-252

Plasma Nucleosome Levels and Risk of Acute Graft-Versus-Host Disease After Myeloablative Allogeneic Hematopoietic Stem Cell Transplantation: A Single-Center Cohort Study

Authors: Hansen, Sune Holm ^{1, ⁎}, Ostrowski, Sisse Rye ^{2, 3}, Andersen, Niels Smedegaard ¹, Friis, Lone Smidstrup ¹, Kornblit, Brian ¹, Petersen, Søren Lykke ¹, Schjødt, Ida ¹, Sengeløv, Henrik ^{1, 2}, Gjærde, Lars Klingen ¹

Source: In Transplantation and Cellular Therapy February 2025

Whole genome regulatory effect of MoISW2 and consequences for the evolution of the rice plant pathogenic fungus Magnaporthe oryzae

Authors: Mengtian Pei, Yakubu Saddeeq Abubakar, Hina Ali, Lianyu Lin, Xianying Dou, Guodong Lu, Zonghua Wang, Stefan Olsson, Ya Li

Source: mBio, Vol 15, Iss 10 (2024)

Subject Terms: heterochromatin, epigenetics, nucleosomes, avirulence genes, retrotransposons, evolution, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/dd13635d57c74474803a0b75039d2a42

Replication-transcription symbiosis in the mammalian nucleus: The art of living together

Authors: Segura, Joana, Gómez, María ^⁎

Source: In Current Opinion in Cell Biology April 2025 93

Rapid reconstitution of ubiquitinated nucleosome using a non-denatured histone octamer ubiquitylation approach

Authors: Weijie Li, Peirong Cao, Pengqi Xu, Fahui Sun, Chi Wang, Jiale Zhang, Shuqi Dong, Jon R. Wilson, Difei Xu, Hengxin Fan, Zhenhuan Feng, Xiaofei Zhang, Qingjun Zhu, Yingzhi Fan, Nick Brown, Neil Justin, Steven J Gamblin, He Li, Ying Zhang, Jun He

Source: Cell & Bioscience, Vol 14, Iss 1, Pp 1-15 (2024)

Subject Terms: Non-denatured, Ubiquitinated histone octamer, Ubiquitin-like, Nucleosomes, Biotechnology, TP248.13-248.65, Biology (General), QH301-705.5, Biochemistry, QD415-436

File Description: electronic resource

Relation: https://doaj.org/toc/2045-3701

Access URL: https://doaj.org/article/66bacaeadfe845a89c52087ca1c0ba19

Prediction of Nucleosome Forming and Nucleosome Inhibiting DNA Sequences Using Convolutional Neural Networks

Authors: Oubounyt, Mhaned, Louadi, Zakaria, Chong, Kil To

Source: 2019 International Conference on Wireless Technologies, Embedded and Intelligent Systems (WITS) Wireless Technologies, Embedded and Intelligent Systems (WITS), 2019 International Conference on. :1-6 Apr, 2019

Relation: 2019 International Conference on Wireless Technologies, Embedded and Intelligent Systems (WITS)

Yeast heterochromatin stably silences only weak regulatory elements by altering burst duration

Authors: Wu, Kenneth ¹, Dhillon, Namrita ¹, Bajor, Antone ², Abrahamsson, Sara ², Kamakaka, Rohinton T. ^{1, 3, ∗}

Source: In Cell Reports 23 April 2024 43(4)

Hypoxia-inducible factor 1 recruits FACT and RNF20/40 to mediate histone ubiquitination and transcriptional activation of target genes

Authors: Lyu, Yajing ^{1, 2}, Yang, Yongkang ^{1, 3}, Talwar, Varen ⁴, Lu, Haiquan ^{1, 3}, Chen, Chelsey ^{1, 2}, Salman, Shaima ^{1, 2}, Wicks, Elizabeth E. ^{1, 2}, Huang, Tina Yi-Ting ^{1, 2}, Drehmer, Daiana ^{1, 2}, Wang, Yufeng ^{1, 2}, Zuo, Qiaozhu ^{1, 2}, Datan, Emmanuel ^{1, 2}, Jackson, Walter, III ^{1, 2}, Dordai, Dominic ^{1, 2}, Wang, Ru ^{1, 2}, Semenza, Gregg L. ^{1, 2, 3, 5, ∗}

Source: In Cell Reports 23 April 2024 43(4)

Cancer Biomarkers in Body Fluids

Contributors: Bianchi, Fabrizio

Subject Terms: primary breast cancer, circulating nucleosomes, circulating tumor cells, plasminogen activator inhibitor-1, cytokines, prostate cancer, breast cancer, treatment decisions, exosomes, molecular composition, cancer pathogenesis, diagnostics, therapeutics, leptomeningeal metastasis, cerebrospinal fluid, extracellular vesicle, biomarker, RNA sequencing, small non-coding RNA, microRNA, exo-oncomiRNAS, TWEAK, semen, rheumatoid factor, autoimmunity, autoantibodies, cancer, predictive biomarker, prognostic biomarker, cancer progression, cancer development, immunotherapy, cancer susceptibility, tumor recurrence, tumor load, fecal immunochemical test (FIT), colonoscopy, flexible sigmoidoscopy, liquid biopsy, mRNA, ctDNA, proteins, extracellular vesicles, biomarkers, exosome, lung cancer, miRNA, plasma, serum, volatile organic compounds (VOCs), gas chromatography (GC), mass spectrometry (MS), headspace solid phase microextraction (HS-SPME), breast cancer biomarkers, principal component analysis (PCA), linear discriminant analysis (LDA), principal component regression (PCR), cfDNA, hereditary and familial pancreatic cancer, somatic mutation profiling, potentially druggable genes, uveal melanoma, circulating tumor DNA, next generation sequencing, PKC inhibitor, treatment, response, melanoma, ovarian cancer, lipidomics, lipid, prognosis, ceramide, phospholipid, plasmalogen, patient stratification, outcome, personalized medicine, neuroblastoma, immune monitoring, anti-GD2, IL-2, GM-CSF, ASCT, dinutuximab, anti-PD-1, urothelial cancer, blood biomarkers, NETs, disease modelling, machine learning, metabolic signaling, molecular pathways, plasma metabolites, diagnostic biomarkers, urine, urine liquid biopsy, DNA, sncRNA, bladder cancer, metabolic pathways, metabolism, metabolomics, epigenetics, miRNAs, epigenetic biomarkers, DNA methylation, micro-RNAs, human papillomavirus, oropharyngeal squamous cell carcinoma, treatment de-escalation, E7 oncoprotein, HPV DNA, HPV antibodies, ELISA, cancer biomarkers, diagnosis, early detection, early diagnosis, Medicine and Nursing, Oncology

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/98869
https://mdpi.com/books/pdfview/book/6922

The esBAF and ISWI nucleosome remodeling complexes influence occupancy of overlapping dinucleosomes and fragile nucleosomes in murine embryonic stem cells

Authors: David C. Klein, Kris Troy, Sarah A. Tripplehorn, Sarah J. Hainer

Source: BMC Genomics, Vol 24, Iss 1, Pp 1-16 (2023)

Subject Terms: Nucleosomes, Chromatin, Remodeling, Stem cells, Subnucleosomes, Overlapping dinucleosomes, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/f9d322bdfaea45b28661ea7aef909f66

Nucleosome location method based on morlet wavelet analysis scalograms investigation

Authors: Touati, Rabeb, Massaoudi, Imen, Oueslati, Afef Elloumi, Lachiri, Zied, Ellouze, Noureddine

Source: 2016 2nd International Conference on Advanced Technologies for Signal and Image Processing (ATSIP) Advanced Technologies for Signal and Image Processing (ATSIP), 2016 2nd International Conference on. :307-312 Mar, 2016

Relation: 2016 2nd International Conference on Advanced Technologies for Signal and Image Processing (ATSIP)

Weak Signal Carried by Chromatin DNA Sequences: Zooming In and Sobering Surprises

Authors: Trifonov, Edward N

Source: 2016 Second International Symposium on Stochastic Models in Reliability Engineering, Life Science and Operations Management (SMRLO) Stochastic Models in Reliability Engineering, Life Science and Operations Management (SMRLO), 2016 Second International Symposium on. :421-425 Feb, 2016

Relation: 2016 Second International Symposium on Stochastic Models in Reliability Engineering, Life Science and Operations Management (SMRLO)

Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C

Authors: Beoung Hun Lee, Zexun Wu, Suhn K. Rhie

Source: Epigenetics & Chromatin, Vol 15, Iss 1, Pp 1-20 (2022)

Subject Terms: Chromatin loops, Regulatory elements, Nucleosomes, Epigenomics, Human cancer cells, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1756-8935

Access URL: https://doaj.org/article/7117324d4a4a4452a62f4f9852c86a86

Dominant effects of the histone mutant H3-L61R on Spt16-gene interactions in budding yeast

Authors: Alex Pablo-Kaiser, McKenzie G. Tucker, Grace A. Turner, Elijah G. Dilday, Avery G. Olmstead, Caroline L. Tackett, Andrea A. Duina

Source: Epigenetics, Vol 17, Iss 13, Pp 2347-2355 (2022)

Subject Terms: histone h3, histone h3.3, fact complex, spt16, yeast, nucleosomes, chromatin, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1559-2294; https://doaj.org/toc/1559-2308

Access URL: https://doaj.org/article/9e5fa4c5d65e4984bc07cf09cc3a6989

Manipulating chromatin architecture in C. elegans

Authors: John L. Carter, Colton E. Kempton, Emily D. S. Hales, Steven M. Johnson

Source: Epigenetics & Chromatin, Vol 15, Iss 1, Pp 1-12 (2022)

Subject Terms: Chromatin, C. elegans, Transgene, Nucleosomes, Nucleosome positioning, Nucleosome occupancy, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1756-8935

Access URL: https://doaj.org/article/58d25892a091461b83642393a8d9e729

Single molecule analysis of CENP-A chromatin by high-speed atomic force microscopy

Authors: Daniël P Melters, Keir C Neuman, Reda S Bentahar, Tatini Rakshit, Yamini Dalal

Source: eLife, Vol 12 (2023)

Subject Terms: epigenetics, nucleosomes, chromatin, single-molecule, high-speed AFM, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/86709; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/f89877f391f143b8bd520efff5038347

Comparison of Nucleosome, Ferritin and LDH Levels in Blood with Clinical Response before and after Electrochemotherapy Combined with IL-12 Gene Electrotransfer for the Treatment of Mast Cell Tumours in Dogs

Authors: Maša Vilfan, Urša Lampreht Tratar, Nina Milevoj, Alenka Nemec Svete, Maja Čemažar, Gregor Serša, Nataša Tozon

Source: Animals, Vol 14, Iss 3, p 438 (2024)

Subject Terms: electrochemotherapy, gene electrotransfer, interleukin 12, mast cell tumour, biomarkers, nucleosomes, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/14/3/438; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/a951de04a55a4dc884c8f78c0ccc487f