DNA Barcodes for Evolution and Biodiversity

Contributors: Koblmüller, Stephan

Subject Terms: cytochrome c oxidase subunit I, black-chin tilapia, DNA barcoding, Savè, species introductions, biodiversity, cryptic species, metabarcoding, reference libraries, high-throughput sequencing, biomonitoring, Barcode Index Number (BIN), faunistics, Mediterranean, new species, unidentified species, BOLD database, cytochrome c oxidase subunit, Croatia, diversity, invertebrates, Mediterranean region, NCBI database, species delimitation, eDNA, eDNA metabarcoding, biodiversity assessment, nature conservation, protected area management, single-drug herbal powder, rbcL, molecular authentication, Tulsi powder, adulteration, dogsharks, Elasmobranchii, mitochondrial DNA, COI, species identification, COI gene, haplotype, Maruca vitrata, pigeon pea, phylogeny, barcoding, Dactylogyridae, Dactylogyrinae, ectoparasites, giant goby, Gobiidae, Gobius cobitis, Greece, Monogenea, Platyhelminthes, ichthyoplankton, Oujiang River Estuary, morphology, 12S, Cyt b, trematodes, Europe, environmental DNA barcoding, cercariae, swimmer’s itch, cytochrome c oxidase subunit 1, CO1, agricultural pests, coffee plant, phylogenetic analysis, entomology, systematics, integrative taxonomy, ascidian, northeastern Mediterranean Sea, phylogeography, Eastern Europe, MrBayes, nrDNA ITS, RAxML, revision, taxonomy, Applied mathematics

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Access URL: https://directory.doabooks.org/handle/20.500.12854/137775
https://mdpi.com/books/pdfview/book/9008

Reassessing the phylogenetic relationships of Pseudosorghum and Saccharinae (Poaceae) using plastome and nuclear ribosomal sequences

Authors: Chen (陈凯), Kai ^{a, b, c, 1}, Liu, Yan-Chun ^{d, e, 1}, Huang, Yue ^{a, b, c, 1}, Wu, Xu-Kun ^{a, b, c}, Ma, Hai-Ying ^f, Peng, Hua ^{g, ⁎}, Li, De-Zhu ^{b, ⁎⁎}, Ma, Peng-Fei ^{a, b, ⁎⁎⁎}

Source: In Plant Diversity March 2025

Phylogenetic incongruence in an Asiatic species complex of the genus Caryodaphnopsis (Lauraceae)

Authors: Shiting Yang, Jiepeng Huang, Yaya Qu, Di Zhang, Yunhong Tan, Shujun Wen, Yu Song

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-18 (2024)

Subject Terms: Phylogenetic incongruence, Species complex, Tropical tree, Mitochondrial genome, Plastome, nrDNA, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/2e4daf1f7b244280a6fd90b582053b8f

Testing plastomes and nuclear ribosomal DNA sequences as the next-generation DNA barcodes for species identification and phylogenetic analysis in Acer

Authors: Ning Fu, Yong Xu, Lu Jin, Tian-Wen Xiao, Feng Song, Hai-Fei Yan, You-Sheng Chen, Xue-Jun Ge

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-15 (2024)

Subject Terms: Acer, Plastome, nrDNA, Next-generation DNA barcodes, Phylogeny, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/0b306575a2454dbd8a2fc3885306592d

Comprehensive morphological and phylogenetic inferences of star-shaped fungus Astraeus ( Diplocystidiaceae ) from sal-dominant tropical and subtropical Pinus - Shorea forests in India: an integrative taxonomic analysis

Authors: Vineet Vishal, Pitchapa Thongsuwan, Pisit Thamvithayakorn, Nuttika Suwannasai, Cherdchai Phosri, María P. Martín, Geetanjali Singh, Shalini Lal

Source: Plant and Fungal Systematics, Vol 69, Iss 1, Pp 39-52 (2024)

Subject Terms: boletoid, diversity, earthstar, india, its nrdna, mushroom, phylogeny, Botany, QK1-989

File Description: electronic resource

Relation: https://pfsyst.botany.pl/Comprehensive-morphological-and-phylogenetic-inferences-of-star-shaped-fungus-Astraeus,179921,0,2.html; https://doaj.org/toc/2544-7459; https://doaj.org/toc/2657-5000

Access URL: https://doaj.org/article/e0602117395b4262948aa0648fb1c361

Verification of the Introgression of Narenga porphyrocoma Germplasm into Saccharum officinarum Using Molecular Markers and GISH Analysis

Authors: Gang Wang, Wei Zhang, Yuanxia Qin, Qingdan Wu, Qinggan Liang, Jiantao Wu, Shengren Sun, Zhuqing Wang, Yuxing An, Jianqiang Wang, Qinnan Wang, Hailong Chang

Source: Agronomy, Vol 15, Iss 1, p 121 (2025)

Subject Terms: Narenga porphyrocoma, intergeneric hybrids, nrDNA-ITS, tetra-primer ARMS-PCR, GISH, germplasm innovation, Agriculture

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4395/15/1/121; https://doaj.org/toc/2073-4395

Access URL: https://doaj.org/article/8b6a966408714d75a123b6c5df0da5d6

A taxonomic revision of the genus Angelica (Apiaceae) in Taiwan with a new species A. aliensis

Authors: Jenn-Che Wang, Hung-Hsin Chen, Tsai-Wen Hsu, Kuo-Hsiang Hung, Chi-Chun Huang

Source: Botanical Studies, Vol 65, Iss 1, Pp 1-18 (2024)

Subject Terms: Angelica, cpDNA, nrDNA, Taxonomic revision, Taiwan, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1999-3110

Access URL: https://doaj.org/article/bb96a6104ff3457d8afadaf25645ff37

The veiled stinkhorn Dictyophora sibirica in Russia – taxonomic position, epitypification and its conspecifity with Phallus ultraduplicatus

Authors: Юрий Александрович Ребриев, Надежда Николаевна Кудашова, Сергей Иванович Гашков, Игорь Александрович Казарцев

Source: Turczaninowia, Vol 26, Iss 3, Pp 173-183 (2023)

Subject Terms: gasteromycetes, its nrdna sequences, molecular phylogeny, mycobiota, mycological collections, stinkhorn, Botany, QK1-989

File Description: electronic resource

Relation: http://turczaninowia.asu.ru/article/view/14034; https://doaj.org/toc/1560-7259; https://doaj.org/toc/1560-7267

Access URL: https://doaj.org/article/3d0d2756441d4cc1beabe939100f0e08

Two new polyporoid species of Fomitopsidaceae (Polyporales, Basidiomycota) from India

Authors: Rituparna Saha, Arun Kumar Dutta, Anirban Roy, Krishnendu Acharya

Source: European Journal of Taxonomy, Vol 935, Iss 1 (2024)

Subject Terms: Fomitopsidaceae, India, ITS nrDNA, Polyporales, taxonomy, Zoology, QL1-991, Botany, QK1-989

File Description: electronic resource

Relation: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/view/2551; https://doaj.org/toc/2118-9773

Access URL: https://doaj.org/article/b99398df41b84d19898975fc855c0fc3

Intergrative Taxonomic Study of the Frullania parvistipula Complex with a Modern Circumscription of the Section Trachycolea (Frullaniaceae, Marchantiphyta)

Authors: Yuriy S. Mamontov, Anna A. Vilnet, John J. Atwood, Nadezhda A. Konstantinova

Source: Plants, Vol 13, Iss 17, p 2397 (2024)

Subject Terms: Holarctic, hybridization, liverworts, molecular phylogeny, morphology, ITS1-2 nrDNA, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/13/17/2397; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/6f60925efdfa4f40bf5dfc73b8bd88fb

Geastrum juliae (Geastrales, Agaricomycetes), a new species from the Russian Far East

Authors: Yury A. Rebriev, Eugeniya M. Bulakh, Alona Yu. Biketova

Source: Botanica Serbica, Vol 47, Iss 1, Pp 41-46 (2023)

Subject Terms: earthstars, gasteroid fungi, gasteromycetes, its nrdna, molecular identification, taxonomy, Plant ecology, QK900-989

File Description: electronic resource

Relation: https://botanicaserbica.bio.bg.ac.rs/arhiva/pdf/2023_47_1_856_full.pdf; https://doaj.org/toc/1821-2158; https://doaj.org/toc/1821-2638

Access URL: https://doaj.org/article/b412a494431c4270bb7741ca218da422

Generalist arbuscular mycorrhizal fungi dominated heavy metal polluted soils at two artisanal and small − scale gold mining sites in southeastern Ecuador

Authors: Juan Pablo Suárez, Paulo Herrera, Carolina Kalinhoff, Oscar Vivanco-Galván, Selvaraj Thangaswamy

Source: BMC Microbiology, Vol 23, Iss 1, Pp 1-12 (2023)

Subject Terms: AMF communities, Heavy metals, AMF-OTUs, Glomeromycotina, 18S nrDNA, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/0aab12499fb9452aa3c97618c189cff1

Complete Plastomes of Ten Rorippa Species (Brassicaceae): Comparative Analysis and Phylogenetic Relationships

Authors: Ting Ren, Lulu Xun, Yun Jia, Bin Li

Source: Agronomy, Vol 14, Iss 5, p 913 (2024)

Subject Terms: Rorippa, plastid genome, nrDNA ITS, cytonuclear discordance, DNA barcoding, Agriculture

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4395/14/5/913; https://doaj.org/toc/2073-4395

Access URL: https://doaj.org/article/63e496297b494c9484934def742c1d00

Taxonomic synopsis of Berberis (Berberidaceae) from the northern Hengduan mountains region in China, with descriptions of seven new species

Authors: Yao-Ke Li, Julian Harber, Chuan Peng, Zhi-Qiang Du, Yao-Wu Xing, Chih-Chieh Yu

Source: Plant Diversity, Vol 44, Iss 5, Pp 505-517 (2022)

Subject Terms: Berberidaceae, Flora of China, Herbarium taxonomy, Plastome sequences, nrDNA sequences, Biology (General), QH301-705.5, Botany, QK1-989

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S246826592200021X; https://doaj.org/toc/2468-2659

Access URL: https://doaj.org/article/afdbf32d781846c1955bf1ef910e78e7

Molecular Phylogeny and Divergence Time Estimation of Onobrychis sect. Onobrychis (Fabaceae) based on nrDNA ITS

Authors: Anahita Hadadi, Akram Kaveh, Hanyieh Nafisi, Shahrokh Kazempour-Osaloo

Source: تاکسونومی و بیوسیستماتیک, Vol 14, Iss 50, Pp 95-114 (2022)

Subject Terms: divergence time, fabaceae, nrdna its, onobrychis, phylogeny, Science, Technology (General), T1-995

File Description: electronic resource

Relation: https://tbj.ui.ac.ir/article_27086_259820380566b76537a3f66a90952dcf.pdf; https://doaj.org/toc/2008-8906; https://doaj.org/toc/2322-2190

Access URL: https://doaj.org/article/44ce37ebe0c04a778e48a4b96397a9ba

Aspicilia nigromaculata sp. nov. (Megasporaceae, Pertusariales, Ascomycota) from Azad Jammu and Kashmir, Pakistan, evidence from morphology and DNA sequencing data

Authors: Iram Fayyaz, Najam ul Sehar Afshan, Abdul Rehman Niazi, Abdul Nasir Khalid

Source: Botanica Serbica, Vol 46, Iss 1, Pp 105-111 (2022)

Subject Terms: its nrdna, nrlsu, phylogeny, saxicolous lichens, Plant ecology, QK900-989

File Description: electronic resource

Relation: https://botanicaserbica.bio.bg.ac.rs/arhiva/pdf/2022_46_1_829_full.pdf; https://doaj.org/toc/1821-2158; https://doaj.org/toc/1821-2638

Access URL: https://doaj.org/article/1cf2a740a96c4ef7aeb194ddb5109b8e

Phylogeny and evolution of Carpinus based on nrDNA ITS region sequences

Authors: Sun, Yan-Lin, Wang, Dong, Kim, Young-Sol, Park, Wan-Geun, Kwon, Oh-Woung, Hong, Soon-Kwan

Source: 2011 4th International Conference on Biomedical Engineering and Informatics (BMEI) Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on. 3:1510-1514 Oct, 2011

Relation: 2011 4th International Conference on Biomedical Engineering and Informatics (BMEI)

Two new chasmophytic species of Silene (Caryophyllaceae, sect. Siphonomorpha) from Iran

Authors: Farzaneh Jafari, Maryam Keshavarzi, Moslem Doostmohammadi, Mansour Mirtadzadini

Source: European Journal of Taxonomy, Vol 860, Iss 1 (2023)

Subject Terms: cpDNA rps16, Iran, nrDNA ITS, Silene, Siphonomorpha, sp. nov., Zoology, QL1-991, Botany, QK1-989

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Relation: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/view/2049; https://doaj.org/toc/2118-9773

Access URL: https://doaj.org/article/d12e43fac41b4810801de7fd863c2d50

Molecular Phylogenetic Analysis of Vicia L. (Fabaceae) Taxa Growing in the Southeastern Anatolia Region of Turkey: Based on Internal Transcribed Spacer (ITS)

Authors: Alevcan Kaplan, Alaattin Selçuk Ertekin, Esra Gündüzler

Source: Turkish Journal of Agriculture: Food Science and Technology, Vol 9, Iss 10, Pp 1831-1839 (2021)

Subject Terms: its, fabaceae, molecular phylogeny, nrdna, vicia l, Agriculture, Agriculture (General), S1-972

File Description: electronic resource

Relation: http://www.agrifoodscience.com/index.php/TURJAF/article/view/4226; https://doaj.org/toc/2148-127X

Access URL: https://doaj.org/article/916f529c38f1414c8af855ad704f0599

Phylogenomic analyses based on the plastid genome and concatenated nrDNA sequence data reveal cytonuclear discordance in genus Atractylodes (Asteraceae: Carduoideae)

Authors: Jinxin Liu, Mengmeng Shi, Zhaolei Zhang, Hongbo Xie, Weijun Kong, Qiuling Wang, Xinlei Zhao, Chunying Zhao, Yulin Lin, Xiaoxia Zhang, Linchun Shi

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: Atractylodes, plastid genome, nrDNA concatenated sequence, phylogeny, cyto-nuclear discordance, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.1045423/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/abc738d1aa21434698195da65ece4fbc