Dataset of shotgun metagenomic evaluation of Sorghum bicolor rhizosphere microbiome in soils preceded by Glycine maxNCBINCBINCBINCBI

Authors: Olubukola Oluranti Babalola, Ben Jesuorsemwen Enagbonma

Source: Data in Brief, Vol 58, Iss , Pp 111270- (2025)

Subject Terms: Crop rotation, Ecological protection, Leguminous fertilization, Next-generation sequence, Sustainable agriculture, Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390

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Relation: http://www.sciencedirect.com/science/article/pii/S2352340925000022; https://doaj.org/toc/2352-3409

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A case of acute community-acquired pneumonia caused by Tropheryma whipplei in pregnant woman without predisposing medical conditions

Authors: Hao Wang, Hongna Yang

Source: IDCases, Vol 39, Iss , Pp e02123- (2025)

Subject Terms: Tropheryma whipplei, Whipple’s disease, Pneumonia, Intra-familiar transmission, Next generation sequence, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2214250924001999; https://doaj.org/toc/2214-2509

Access URL: https://doaj.org/article/1f0a07aa63054001a7a5995c36856158

The pharmacogenomic landscape in the Chinese: An analytics of pharmacogenetic variants in 206,640 individuals

Authors: Wang, Lei-Yun ^{1, 2, 3, 4, 13, 14, 37}, Yu, Bing ^{1, 2, 3, 4, 24, 37}, Peng, Ying ^{8, 37}, Mou, Kai ^{6, 37}, Zhan, Yan ^{1, 2, 3, 4}, Wang, Yi-Min ^{12, 32}, Ji, Wei ³³, Xu, Chun ¹⁰, Xiao, Le-Dong ¹¹, Chen, Yan ¹¹, Wang, Hua ^{7, 8}, She, Zhi-Hua ⁹, Dai, Peng ⁵, Zhao, Gan-Ye ⁵, Wang, Yang ¹⁵, Yu, Lu-Lu ^{1, 2, 3, 4, 34}, Yu, Miao ^{1, 2, 3, 4}, Liu, Ke ^{1, 2, 3, 4}, Cui, Jia-Jia ^{1, 2, 3, 4, 16, 17}, Liu, Rong ^{1, 2, 3, 4}, Li, Xi ^{1, 2, 3, 4}, Huang, Yuan-Fei ^{1, 2, 3, 4}, Liu, Zhao-Qian ^{1, 2, 3, 4}, Ouyang, Dong-Sheng ^{1, 2, 3, 4, 18}, Zhang, Wei ^{1, 2, 3, 4}, Li, Qing ^{1, 2, 3, 4}, Xiong, Xing-Liang ^{1, 2, 3, 4}, Guo, Cheng-Xian ¹⁹, Li, Jin-Gao ^{20, 21}, Lv, Qiao-Li ^{20, 21}, Xing, Qing-He ²², Wang, Hai-Jian ²³, Li, Zhi-Ling ²⁴, Wu, Ji-Chu ²⁵, Huang, Long-Jian ²⁶, He, Jian ²⁷, Tan, Li-Ming ²⁸, Hong, Wen-Xu ²⁹, Wang, Xue-Chang ³⁰, Li, Chao-Peng ³⁵, Lu, Qin ³⁶, Zhang, Long ³¹, Kong, Xiang-Dong ^{5, ∗}, Zhou, Hong-Hao ^{1, 2, 3, 4, ∗∗}, Yin, Ji-Ye ^{1, 2, 3, 4, ∗∗∗}

Source: In The Innovation 3 February 2025 6(2)

Editorial: Molecular informatics in precision medicine

Authors: Sayed AbdulAzeez, Hari S. Sharma, J. Francis Borgio

Source: Frontiers in Medicine, Vol 11 (2024)

Subject Terms: bioinformatics, personalized medicine, next-generation sequence (NGS), sarcoidosis, biomarker, recurrent pregnancy loss, Medicine (General), R5-920

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmed.2024.1526520/full; https://doaj.org/toc/2296-858X

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β-galactosidase producing Lactiplantibacillus spp in intestinal microbiome mouse diarrhea model and metagenomic analyses

Authors: Mahanthesh Vasudha, Devaraja Gayathri

Source: The Microbe, Vol 5, Iss , Pp 100173- (2024)

Subject Terms: Probiotics, LAB, Lactose intolerance, Next generation sequence, β-galactosidase, Metagenomics, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2950194624001407; https://doaj.org/toc/2950-1946

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Case report: Extraskeletal Ewing sarcoma with a germline pathogenic variant of SMARCA4

Authors: Min-Chae Kang, Sun-Young Kong, Sang-Yoon Park, Seog-Yun Park, Eun-Gyeong Lee, Chong Woo Yoo, Yun Hwan Kim, Hyeji Kim, Wonyoung Choi

Source: Frontiers in Oncology, Vol 14 (2024)

Subject Terms: ovarian cancer, Ewing sarcoma, genetic counseling, SMARCA4 mutation, Next-generation sequence (NGS), Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2024.1422605/full; https://doaj.org/toc/2234-943X

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Mapping, Distribution, Function, and High-Throughput Methodological Strategies for Soil Microbial Communities in the Agroecosystem in the Last Decades

Authors: Gobinath Chandrakasan, Markus Gastauer, Gabriel Marcus

Source: Spanish Journal of Soil Science, Vol 14 (2024)

Subject Terms: soil microbiome, bacteria, fungi, metagenomics-next generation sequence, plant‒microbe interaction, Agriculture

File Description: electronic resource

Relation: https://www.frontierspartnerships.org/articles/10.3389/sjss.2024.12080/full; https://doaj.org/toc/2253-6574

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Accelerated implementation of FQSqueezer novel genomic compression method

Authors: Amich, Monica, Luca, Pasquale De, Fiscale, Stefano

Source: 2020 19th International Symposium on Parallel and Distributed Computing (ISPDC) Parallel and Distributed Computing (ISPDC), 2020 19th International Symposium on. :158-163 Jul, 2020

Relation: 2020 19th International Symposium on Parallel and Distributed Computing (ISPDC)

Patterns and unique features of infantile cholestasis among Arabs

Authors: Abdulrahman Al-Hussaini, Sami Alrashidi, Deema H. Hafez, Yasir S. Alkhalifah, Bashaer Otayn, Majid Alrasheed, Sumayah Al Mufarreh, Sultan AlKasim

Source: Frontiers in Pediatrics, Vol 12 (2024)

Subject Terms: liver disease, next-generation sequence, Saudi Arabia, whole exome sequence, idiopathic neonatal hepatitis, Pediatrics, RJ1-570

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Relation: https://www.frontiersin.org/articles/10.3389/fped.2024.1423657/full; https://doaj.org/toc/2296-2360

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Complete mitochondrial genome of Basilepta melanopus Lefèvre, 1893 (coleoptera: chrysomelidae: eumolpinae), a tea pest from Southern China

Authors: Yonglin Liao, Yurong Fang, Weiping Chen, Jihua Wang

Source: Mitochondrial DNA. Part B. Resources, Vol 9, Iss 3, Pp 394-397 (2024)

Subject Terms: Basilepta melanopus, next generation sequence, mitochondrial genome, tea pest, eumolpinae, phylogeny, Genetics, QH426-470

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Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/a64e2fdb1e834b40accec88fca67ba29

Molecular insights into the salt stress response of Pearl millet (Pennisetum glaucum): Pathways, differentially expressed genes and transcription factors

Authors: Faten Dhawi

Source: Journal of Sustainable Agriculture and Environment, Vol 2, Iss 4, Pp 444-455 (2023)

Subject Terms: gene expression, Pennisetum glaucum (L. R. Br. ssp. monodii (Maire) Brunken), plant productivity, protein family (PFm), RNA Next Generation Sequence, salt tolerance, Agriculture (General), S1-972, Environmental sciences, GE1-350

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Relation: https://doaj.org/toc/2767-035X

Access URL: https://doaj.org/article/f6114c512685478c983a2ea279c35b25

Editorial: Liquid biopsies in hematological malignancies

Authors: Susana García-Silva, Dario Marchetti, Miguel Gallardo

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: liquid biopsies, hematological malignancies, minimal residual disease (MRD), immunotherapy, next-generation sequence (NGS), Immunologic diseases. Allergy, RC581-607

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Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1440394/full; https://doaj.org/toc/1664-3224

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Editorial: Next generation sequencing: applications in foodborne pathogens

Authors: Alexandre Lamas, Alejandro Garrido-Maestu

Source: Frontiers in Microbiology, Vol 15 (2024)

Subject Terms: next generation sequence (NGS), long read sequence technology, short-read sequencing, bioinformatics, foodborne pathogen, food safety, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1415863/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/0bf68de1d6bd4bb78b0723e95b765380

The Swedish childhood tumor biobank: systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden

Authors: Teresita Díaz de Ståhl, Alia Shamikh, Markus Mayrhofer, Szilvester Juhos, Elisa Basmaci, Gabriela Prochazka, Maxime Garcia, Praveen Raj Somarajan, Katarzyna Zielinska-Chomej, Christopher Illies, Ingrid Øra, Peter Siesjö, Per-Erik Sandström, Jakob Stenman, Magnus Sabel, Bengt Gustavsson, Per Kogner, Susan Pfeifer, Gustaf Ljungman, Johanna Sandgren, Monica Nistér

Source: Journal of Translational Medicine, Vol 21, Iss 1, Pp 1-15 (2023)

Subject Terms: Biobank, Genomic, Childhood cancer, Next generation sequence, Mutation, Bioinformatics, Medicine

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Relation: https://doaj.org/toc/1479-5876

Access URL: https://doaj.org/article/7240e3c4477b412ab92cab9a38e14c6c

Validity of pathological diagnosis for early colorectal cancer in genetic background

Authors: Kenichiro Okimoto, Yosuke Hirotsu, Makoto Arai, Kenji Amemiya, Naoki Akizue, Yuki Ohta, Takashi Taida, Keiko Saito, Hiroshi Ohyama, Tomoaki Matsumura, Motoi Nishimura, Kazuyuki Matsushita, Keisuke Matsusaka, Toshio Oyama, Hitoshi Mochizuki, Tetsuhiro Chiba, Jun Kato, Jun‐ichiro Ikeda, Osamu Yokosuka, Naoya Kato, Masao Omata

Source: Cancer Medicine, Vol 12, Iss 7, Pp 8490-8498 (2023)

Subject Terms: colorectal adenoma, colorectal cancer, next‐generation sequence, pathological diagnosis, TCGA, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

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Relation: https://doaj.org/toc/2045-7634

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A Web Based Pipeline Tool for the Combination of Logic Conditions for NGS Data

Authors: Li, Hui, Liu, Chunmei

Source: 2016 15th IEEE International Conference on Machine Learning and Applications (ICMLA) ICMLA Machine Learning and Applications (ICMLA), 2016 15th IEEE International Conference on. :498-501 Dec, 2016

Relation: 2016 15th IEEE International Conference on Machine Learning and Applications (ICMLA)

A novel candidate hepatitis C virus genotype 4 subtype identified by next generation sequencing full-genome characterization in a patient from Saudi Arabia

Authors: Mariantonietta Di Stefano, Mona H. Ismail, Thomas Leitner, Giuseppina Faleo, Marwan Jabr Alwazzeh, Jean Lutamyo Mbisa, Josè Ramon Fiore, Teresa Antonia Santantonio

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: Hepatitis C virus (HCV), genotypes, subtypes, next generation sequence, Saudi Arabia, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1285367/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/686c5fcb26ba46a6926b4ecf1697fff5

Oral Microbial Communities and Oral Health

Contributors: Nomura, Yoshiaki

Subject Terms: oral microbiome, core microbiome, centenarian, next-generation sequencing, pyrosequencing, elderly, black stain, oral microbiota, Neisseria, Porphyromonas, Streptococcus, Molar-incisor malformation, complication, microbiome, pathogenesis, localized tooth-related periodontitis, periodontitis, Down syndrome, polymerase chain reaction, microbiota, gingivitis, silver diamine fluoride, SDF, silver fluoride, AgF, biofilm, plaque, early childhood caries, core microbiota, Streptococcus mutans, biofilms, demineralization, oral disease, systemic disease, genome-wide analysis, personalized medicine, next generation sequence, clinical application, Research and information: general, Biology, life sciences

File Description: image/jpeg

Access URL: https://directory.doabooks.org/handle/20.500.12854/78712
https://mdpi.com/books/pdfview/book/4802

Transposable element finder (TEF): finding active transposable elements from next generation sequencing data

Authors: Akio Miyao, Utako Yamanouchi

Source: BMC Bioinformatics, Vol 23, Iss 1, Pp 1-17 (2022)

Subject Terms: Transposable element, Retrotransposon, Next generation sequence, Target site duplication, Tos17, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/2490800f02f74a24b385ef08ea9edecb

DEVOUR: Deleterious Variants on Uncovered Regions in Whole-Exome Sequencing

Authors: Erdem Türk, Akif Ayaz, Ayhan Yüksek, Barış E. Süzek

Source: PeerJ, Vol 11, p e16026 (2023)

Subject Terms: Next-generation sequence (NGS) analysis, Whole-exome sequencing (WES) analysis, Medical genetics, Genetic disposition to disease, Genetic diseases, Genetic variants, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/16026.pdf; https://peerj.com/articles/16026/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/e57b288bc55841fc967faca0463f27dd