Roux-en-Y gastric bypass-associated fecal tyramine promotes colon cancer risk via increased DNA damage, cell proliferation, and inflammation

Authors: Maria Glymenaki, Sophie Curio, Smeeta Shrestha, Qi Zhong, Laura Rushton, Rachael Barry, Mona El-Bahrawy, Julian R. Marchesi, Yulan Wang, Nigel J. Gooderham, Nadia Guerra, Jia V. Li

Source: Microbiome, Vol 13, Iss 1, Pp 1-20 (2025)

Subject Terms: Colon cancer risk, Bariatric surgery, Prevention, Inflammatory bowel disease (IBD), Host-microbial interaction, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/b76d6034a17f49848e969e123d51de9c

Bacillus paralicheniformis SYN-191 isolated from ginger rhizosphere soil and its growth-promoting effects in ginger farming

Authors: Yanan Sun, Kai Liu, Zhongliang Liu, Yayu Liu, Xuerong Yang, Binghai Du, Xiang Li, Ningyang Li, Bo Zhou, Xueming Zhu, Hailong Wang, Bingyin Peng, Chengqiang Wang

Source: BMC Microbiology, Vol 25, Iss 1, Pp 1-14 (2025)

Subject Terms: Ginger, Continuous cropping, Bacillus paralicheniformis, Plant-microbial interaction, Whole genome analysis, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/5c0d096c53414bc196ec6a607d5f1674

Temperature-dependent metabolic interactions between Streptococcus thermophilus and Lactobacillus delbrueckii ssp. bulgaricus in milk fermentation: Insights from gas chromatography–ion mobility spectrometry metabolomics

Authors: Ting Wu, Shuai Guo, Lai-Yu Kwok, Heping Zhang, Jicheng Wang

Source: Journal of Dairy Science, Vol 108, Iss 1, Pp 242-256 (2025)

Subject Terms: dairy products, microbial interaction, starter culture, volatolomics, Dairy processing. Dairy products, SF250.5-275, Dairying, SF221-250

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022030224011561; https://doaj.org/toc/0022-0302

Access URL: https://doaj.org/article/4d8b86fe557c43c7b49a58b205dc519c

Unveiling the bacterial diversity and potential of the Avicennia marina ecosystem for enhancing plant resilience to saline conditions

Authors: Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt, Maged M. Saad

Source: Environmental Microbiome, Vol 19, Iss 1, Pp 1-23 (2024)

Subject Terms: Global food security, Salt stress tolerance, Halophilic bacteria, Avicennia marina, Biostimulants, And Plant-microbial interaction, Environmental sciences, GE1-350, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2524-6372

Access URL: https://doaj.org/article/2089434193374a64b112d98236620fb0

Radioactivity distributions and biohazard assessment of coastal marine environments of niger-delta, Nigeria

Authors: Maxwell Omeje, Muyiwa M. Orosun, Godfrey U. Aimua, Olusegun O. Adewoyin, Soheil Sabri, Hitler Louis, Emmanuel S. Joel, Conrad A. Omohinmin, Eze F. Ahuekwe, Patrick O. Isibor, Mojisola R. Usikalu, Ifeanyi A. Oha, Nuradeen N. Garba, Terkaa V. Targema

Source: All Earth, Vol 36, Iss 1, Pp 1-19 (2024)

Subject Terms: Radioactivity, microbial interaction, bioaccumulation, pollution, niger delta, Geology, QE1-996.5, Physical geography, GB3-5030

File Description: electronic resource

Relation: https://doaj.org/toc/2766-9645

Access URL: https://doaj.org/article/d5160fc7a84a41a3a927149154fa1006

Construction of synthetic microbial community and its application in fermented foods

Authors: ZHANG Yi, LIU Jingke, LIU Junli, LIU Enkui, JI Yanzhong, SHENG Qinghai

Source: Zhongguo niangzao, Vol 43, Iss 11, Pp 13-19 (2024)

Subject Terms: synthetic microbial community, fermented foods, microbial interaction, Biotechnology, TP248.13-248.65, Food processing and manufacture, TP368-456

File Description: electronic resource

Relation: https://manu61.magtech.com.cn/zgnz/fileup/0254-5071/PDF/0254-5071-2024-43-11-13.pdf; https://doaj.org/toc/0254-5071

Access URL: https://doaj.org/article/507793eebe70493c95fe194bdf404d5e

Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions

Authors: Cheng-Zhuang Chen, Ping Li, Ling Liu, Yong-Jun Sun, Wen-Ming Ju, Zhi-Hua Li

Source: Microbiome, Vol 12, Iss 1, Pp 1-15 (2024)

Subject Terms: Marine ranching sediment, Microbial interaction network, Metagenomic sequencing analysis, Metagenome-assembled genomes, Biogeochemical cycling, Viral communities, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/e5cc868bc36c4054bb510f7b4af78af4

Differentiation of soil metabolic function and microbial communities between plantations and natural reforestation

Authors: Nannan Zhang, Xiaoxia Chen, Tingju Ren, Jiangcheng Luo, Jin Liang, En Tao Wang, Fusun Shi

Source: Frontiers in Microbiology, Vol 16 (2025)

Subject Terms: microbiome, metabolomics, plant-microbial interaction, mono-planation, natural reforestation, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2025.1544641/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/c6f2b871ef4c4578bf4443e95259a3f5

Microbial communities in the phyllosphere and endosphere of Norway spruce under attack by Heterobasidion

Authors: Wen-jing Meng, Zi-lan Wen, Risto Kasanen, Hui Sun, Fred O. Asiegbu

Source: Frontiers in Microbiology, Vol 15 (2025)

Subject Terms: microbial community structure, Heterobasidion, network analysis, microbial interaction, microbial community diversity, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1489900/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/d3f5e0239687447bb04a4088a7713620

Kuratsuki Bacteria Interactions with Sake Yeast and Effect on Taste

Authors: Hiromi Nishida

Source: Applied Microbiology, Vol 4, Iss 3, Pp 1309-1319 (2024)

Subject Terms: flavor and taste, kuratsuki microorganisms, microbial interaction, sake making, sake yeast, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2673-8007/4/3/90; https://doaj.org/toc/2673-8007

Access URL: https://doaj.org/article/27a8c9e7fa2644f897f5248a9eb1b547

Mitigation Strategies and Tolerance of Plants to Abiotic Stresses

Contributors: Lima, Geovani Soares de, dos Anjos Soares, Lauriane Almeida, Da Silva Sá, Francisco Vanies

Subject Terms: cotton seedlings, ion homeostasis, foliar melatonin, membrane damage, low temperature, salt stress, abiotic stress, genetic variability, Passiflora edulis Sims, Brazilian semi-arid region, PGPR, biofilm, motility, autoaggregation capacity, Mentha piperita, water stress, pit volume, hydrogel, physiology, fruit harvest, Saccharum officinarum L., water scarcity, water deficit mitigation, Capsicum annuum L., Glomus mosseae, nano-selenium, nano-zinc oxide, chlorophyll, chlorophyll a fluorescence, coastal habitats, ion accumulation, osmotic adjustment, Plantago maritima, soil flooding, soil water content, waterlogging, wheat, physiological response, elevated CO2 concentration, reduced watering, increased temperature, grapevine rootstock, Ruggeri, photosynthesis, carbohydrates, ROS detoxification, salinity, transcriptome profiling, grain yield, green leaf area, leaf area duration, net assimilation rate, plant dry weight, relative growth rate, specific leaf weight, apricot flowers, low-temperature stress, antioxidant enzymes, cellular damage, Pb, pulp and paper sludges, soil properties, lettuce, respiration, plant-microbial interaction, sustainable agriculture, 16S rRNA gene, drought tolerance, biological control, stress condition, drought, stress physiology, agronomic indicators, plant stress, ubiquitin, SUMOylation, autophagy, phytohormones, rice, selenium toxicity stress, roots and leaves, Psidium guajava L., amino acid, catalase, electrolyte leakage, hydrogen peroxide, malondialdehyde, ascorbate peroxidase, polyethylene glycol, proline, superoxide dismutase, superoxide anion, Triticum aestivum L., physiological attributes, stevia, fish waste, bio-fertilizer, Brassica napus L., Whirly, evolutionary analysis, expression pattern, winter wheat, late spring coldness, optimizing phosphorus and potassium application, root physiology, nutrient accumulation, Zucchini, TME toxicity, non-enzymatic antioxidants, fruit growing, non-enzymatic compound, Passiflora edulis sims, sustainability, water salinity, chelated calcium, gas exchange, Technology: general issues, Oncology

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/153042
https://mdpi.com/books/pdfview/book/10228

Insights in Oral Microbiota

Contributors: Ren, Biao

Subject Terms: small molecules, Streptococcus mutans, drug repurposing, sortase A, glucosyltransferases (Gtfs), irresistin-16, dual-species biofilms, Streptococcus sanguinis, regulatory effect, cariogenic virulence, early childhood caries, secondary caries, biofilms, giomers, antibacterial quaternary ammonium monomers, cleft palate, oral bacteria, nasal bacteria, 16S ribosomal RNA, bacterial translocation, spatial heterogeneity, high-throughput sequencing, Treponema denticola, Alzheimer’s disease, chronic periodontitis, neuronal apoptosis, amyloid-β accumulation, Porphyromonas gingivalis, Enterococcus faecalis, Candida albicans, interaction, supernatant, biofilm, fluorescence in situ hybridization, microbial detection, oral microecology, oral microorganism, oral cancer, dysbiosis, tobacco, biomarker, diagnosis, 16S rRNA, oral microbiota, systemic disease, periodontal disease, respiratory disease, Fusobacterium nucleatum, microbial interaction, probiotics, microbiota, periodontitis, dental caries, gingivitis, oral health, Medicine and Nursing, Surgery

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/152757
https://mdpi.com/books/pdfview/book/9916

Diverse alterations and correlations in antioxidant gene expression in honeybee (Apis mellifera) hemocytes interacting with microbial pathogen-associated molecular patterns and pesticide cocktails

Authors: Sukkar, Dani ^{a, b, ⁎}, Wagner, Lea ^{a, c}, Bonnefoy, Antoine ^b, Falla-Angel, Jairo ^a, Laval-Gilly, Philippe ^a

Source: In Environmental Toxicology and Pharmacology March 2025 114

Root interactions in wheat/fababean intercropping system enhanced growth performance and yield

Authors: Arafat, Yasir ^{a, b, e}, Shah, Asma ^c, Din, Israr Ud ^d, Jamal, Muhsin ^e, Shah, Mudassir ^a, Kuchkarova, Nigora ^a, Lin, Wenxiong ^b, Lin, Sheng ^{b, ⁎⁎}, Shao, Hua ^{a, ⁎}

Source: In Rhizosphere March 2025 33

Metagenomic insight into the diffusion signal factor mediated social traits of anammox consortia after starvation

Authors: Wang, Xue-Ping ^b, Han, Na-Na ^b, Yang, Jia-Hui ^b, Fan, Nian-Si ^{a, b}, Jin, Ren-Cun ^{a, b, ⁎}

Source: In Journal of Environmental Management February 2025 375

Microbial regulation of interspecific interaction and metabolism in anammox process to achieve coadaptation to artificial sweeteners

Authors: Yang, Jia-Hui ^b, Han, Na-Na ^b, Hu, Jin-Bao ^a, Jiang, Yuan ^b, Fan, Nian-Si ^{a, 1, ⁎}, Jin, Ren-Cun ^a

Source: In Journal of Hazardous Materials 15 January 2025 482

Microbial coadaptation drives the dynamic stability of microecology in mainstream and sidestream anammox systems under exposure of progesterone

Authors: Huang, Dong-Qi ^b, Yang, Jia-Hui ^b, Han, Na-Na ^b, Yang, Jun-Hui ^b, Jiang, Yuan ^b, Li, Zi-Yue ^b, Jin, Ren-Cun ^{a, ⁎}, Fan, Nian-Si ^{a, ⁎}

Source: In Water Research 1 January 2025 268 Part B

Enhancement on selenium volatilization for phytoremediation: role of plant and soil microbe interaction

Authors: Ranju R. Karna, Samantha T. Kumara, Vance J. McCracken, Thomas J. Fowler, Zhi-Qing Lin

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: phytoremediation, selenium, volatilization, plant and microbial interaction, rabbitfoot grass, Indian mustard, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1504528/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/e839275ecf5e42378999cde052b0923f

Silent signals: how N-acyl homoserine lactones drive oral microbial behaviour and health outcomes

Authors: Zelda Ziyi Zhao, Lifeng Guo, Wenwen Shan, Chun Hung Chu, Jing Zhang

Source: Frontiers in Oral Health, Vol 5 (2024)

Subject Terms: acyl-homoserine lactones, quorum sensing, microbial interaction, biofilm, oral health, quorum quenching acyl-homoserine lactones, Dentistry, RK1-715

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/froh.2024.1484005/full; https://doaj.org/toc/2673-4842

Access URL: https://doaj.org/article/f53ac1312d7a4e2db6a73f3d2b260965

A synthetic microbial consortium protects against obesity by regulating vitamin B6 metabolism

Authors: Xiuzhao Chen, Mengxue Gao, Lina Wang, Guifen Qiang, Yili Wu, He Huang, Guangbo Kang

Source: Gut Microbes, Vol 16, Iss 1 (2024)

Subject Terms: Synthetic microbial consortia, obesity, gut microbiota, metabolomics, microbial interaction, engineered probiotics, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/c1fd796791a94f9bb20b1e3e12ab5033