Influence of soil depth, irrigation, and plant genotype on the soil microbiome, metaphenome, and carbon chemistry

Authors: Katherine I. Naasko, Daniel Naylor, Emily B. Graham, Sneha P. Couvillion, Robert Danczak, Nikola Tolic, Carrie Nicora, Steven Fransen, Haiying Tao, Kirsten S. Hofmockel, Janet K. Jansson

Source: mBio, Vol 14, Iss 5 (2023)

Subject Terms: soil depth, multi-omics, calcareous soil, carbon storage, metaphenome, soil microbiome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/fa0bf507cf1b4aa68a730bb6059ea221

Synthetic Soil Aggregates: Bioprinted Habitats for High-Throughput Microbial Metaphenomics

Authors: Darian Smercina, Neerja Zambare, Kirsten Hofmockel, Natalie Sadler, Erin L. Bredeweg, Carrie Nicora, Lye Meng Markillie, Jayde Aufrecht

Source: Microorganisms, Vol 10, Iss 5, p 944 (2022)

Subject Terms: soil, microbiome, bioprinting, multi-omics, metaphenome, soil aggregates, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/10/5/944; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/c1996e15950f40aa9b9830eb991b60f9

Visualizing Microbial Community Dynamics via a Controllable Soil Environment

Authors: Arunima Bhattacharjee, Dusan Velickovic, Thomas W. Wietsma, Sheryl L. Bell, Janet K. Jansson, Kirsten S. Hofmockel, Christopher R. Anderton

Source: mSystems, Vol 5, Iss 1 (2020)

Subject Terms: SoilBox, metaphenome, mass spectrometry imaging, chitin, soil moisture, fungal bridging, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/47bed323bd8047748e1b298c1b125025

Visualizing Microbial Community Dynamics via a Controllable Soil Environment

Authors: Arunima Bhattacharjee, Dusan Velickovic, Thomas W. Wietsma, Sheryl L. Bell, Janet K. Jansson, Kirsten S. Hofmockel, Christopher R. Anderton

Source: mSystems, Vol 5, Iss 1 (2020)

Subject Terms: SoilBox, metaphenome, mass spectrometry imaging, chitin, soil moisture, fungal bridging, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/a42e82c5566142d39eed927447db3623

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations

Authors: Taniya Roy Chowdhury, Joon-Yong Lee, Eric M. Bottos, Colin J. Brislawn, Richard Allen White, Lisa M. Bramer, Joseph Brown, Jeremy D. Zucker, Young-Mo Kim, Ari Jumpponen, Charles W. Rice, Sarah J. Fansler, Thomas O. Metz, Lee Ann McCue, Stephen J. Callister, Hyun-Seob Song, Janet K. Jansson

Source: mSystems, Vol 4, Iss 4 (2019)

Subject Terms: metaphenome, metatranscriptome, multi-omics, soil microbiome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/47047ddab7ff4fd997a736f630733e1b