A Graph-Based Molecular Communications Model Analysis of the Human Gut Bacteriome

Authors: Somathilaka, S.S., Martins, D.P., Barton, W., O'Sullivan, O., Cotter, P.D., Balasubramaniam, S.

Source: IEEE Journal of Biomedical and Health Informatics IEEE J. Biomed. Health Inform. Biomedical and Health Informatics, IEEE Journal of. 26(7):3567-3577 Jul, 2022

Unveiling the latitudinal dependency of global patterns in soil prokaryotic gene content

Authors: Wang, Jichen, Ge, Yuan ^⁎

Source: In Science of the Total Environment 25 April 2025 974

Tramadol Influences Cellular Metabolism and Autophagy in Germ and Sertoli Cells; Exercise Training as A Potential Ameliorative Strategy

Authors: Majid Rohani, Javad Tolouei Azar, Mazdak Razi, Asghar Tofighi

Source: Cell Journal, Vol 26, Iss 6, Pp 380-391 (2024)

Subject Terms: autophagy, exercise training, metabolic interactions, spermatogenesis, tramadol, Medicine, Science

File Description: electronic resource

Relation: https://www.celljournal.org/article_714084_d41d8cd98f00b204e9800998ecf8427e.pdf; https://doaj.org/toc/2228-5806; https://doaj.org/toc/2228-5814

Access URL: https://doaj.org/article/5717ac0ef6c541d7ae8d945f5b601685

Toxoplasma acyl-CoA synthetase TgACS3 is crucial to channel host fatty acids in lipid droplets and for parasite propagation

Authors: Sheena Dass, Serena Shunmugam, Sarah Charital, Samuel Duley, Christophe-Sébastien Arnold, Nicholas J. Katris, Pierre Cavaillès, Marie-France Cesbron-Delauw, Yoshiki Yamaryo-Botté, Cyrille Y. Botté

Source: Journal of Lipid Research, Vol 65, Iss 10, Pp 100645- (2024)

Subject Terms: Toxoplasma gondii, apicomplexa, host-parasite metabolic interactions, Lipid metabolism, membrane biogenesis, fatty acid activation, Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022227524001500; https://doaj.org/toc/0022-2275

Access URL: https://doaj.org/article/d13ca52816b445b8b032a4aab4fa73a8

Host-Gut Microbiota Metabolic Interactions and Their Role in Precision Diagnosis and Treatment of Gastrointestinal Cancers

Authors: Chunhao Cao, Siran Yue, Aiping Lu, Chao Liang

Source: Pharmacological Research, Vol 207, Iss , Pp 107321- (2024)

Subject Terms: gastrointestinal cancers, gut microbiota, metabolic interactions, biomarkers, microbiome therapeutics, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1043661824002664; https://doaj.org/toc/1096-1186

Access URL: https://doaj.org/article/ca8e8a2bac704537a2a040062222c1a5

Deciphering microbial metabolic interactions and their implications for community dynamics in acid mine drainage sediments

Authors: Gao, Shao-Ming ^{a, 1}, Wang, Pandeng ^{a, 1}, Li, Qi ^{a, 1}, Shu, Wen-Sheng ^b, Tang, Ling-Yun ^a, Lin, Zhi-Liang ^a, Li, Jin-Tian ^{b, ⁎}, Huang, Li-Nan ^{a, ⁎}

Source: In Journal of Hazardous Materials 5 October 2024 478

Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics

Authors: Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S. Abe, Masato Yamamichi, Yusuke Okazaki, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E. Toby Kiers, Hirokazu Toju

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: community stability, competition, dysbiosis, ecological niche, metabolic interactions, shotgun metagenomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1261137/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/03c930001dff489c993c20b10b8d2745

Risk assessment and dissemination mechanism of antibiotic resistance genes in compost

Authors: Yifei Xu, Lin Zhu, Shanguo Chen, Haiyan Wu, Ruiqi Li, Jing Li, Jun Yuan, Tao Wen, Chao Xue, Qirong Shen

Source: Environment International, Vol 178, Iss , Pp 108126- (2023)

Subject Terms: Compost, Antibiotic resistance genes (ARGs), Risk assessment, Metagenome, Metabolic interactions, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0160412023003999; https://doaj.org/toc/0160-4120

Access URL: https://doaj.org/article/b60155cd08b446a3ab8943fa7f9ed533

Host miRNAs-microbiota interactions in gastric cancer

Authors: Yan Yang, Yingying Huang, Wu Lin, Jin Liu, Xiangliu Chen, Chuanzhi Chen, Xiongfei Yu, Lisong Teng

Source: Journal of Translational Medicine, Vol 20, Iss 1, Pp 1-8 (2022)

Subject Terms: Gastric cancer, miRNAs, Microbiota, Metabolic interactions, Microenvironment, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/1479-5876

Access URL: https://doaj.org/article/67cfcac45c58416f92b6022aab8a23bb

microRNA Regulation in Health and Disease

Authors: Subramanian, Subree, Steer, Clifford

Subject Terms: QH426-470, QH301-705.5, Q1-390, microRNAs, lipoprotein, myofibroblast, miR-148a, C2C12 cell line, endometrial receptivity, interstitial lung disease, exon switch, atherosclerosis, colorectal cancer, let-7, miR-125b, idiopathic pulmonary fibrosis, biomarker, recurrent implantation failure, severe acute respiratory syndrome coronavirus, miRSNP, transfer, miR-106a-5p, somatostatin analogues, neuroendocrine tumors, gene expression, uremia, HKII, miRNAs, metabolic interactions, non-Hodgkin lymphoma, PIK3R1, small RNA, miR-7, Hexokinase 2, CD34 cryptic splicing, systemic sclerosis, small RNA-seq, myogenic differentiation, proteomics, CD34 cell-clusters, palindromic small RNA, infertility, gut microbiota, ORF miRNA target, DNA complemented palindrome, rs17723799, complemented palindromic small RNA, MIR143, microRNA, cancer, muscle atrophy, Genetics (non-medical)

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/53437
https://mdpi.com/books/pdfview/book/2044

Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes

Authors: Ryan McClure, Yuliya Farris, Robert Danczak, William Nelson, Hyun-Seob Song, Aimee Kessell, Joon-Yong Lee, Sneha Couvillion, Christopher Henry, Janet K. Jansson, Kirsten S. Hofmockel

Source: mSystems, Vol 7, Iss 5 (2022)

Subject Terms: soil microbiome, consortia, model microbiome, chitin decomposition, metabolic interactions, chitin, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/d0fb3cb1aea643bd847c8447a403177f

Distinct N and C Cross-Feeding Networks in a Synthetic Mouse Gut Consortium

Authors: Pau Pérez Escriva, Tobias Fuhrer, Uwe Sauer

Source: mSystems, Vol 7, Iss 2 (2022)

Subject Terms: food web, metabolic interactions, metabolism, metabolomics, microbial communities, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/aa1d4eb7a6d446168f4493be89bd89ef

Formation, Development, and Cross-Species Interactions in Biofilms

Authors: Aihua Luo, Fang Wang, Degang Sun, Xueyu Liu, Bingchang Xin

Source: Frontiers in Microbiology, Vol 12 (2022)

Subject Terms: biofilm, cross-species interactions, metabolic interactions, quorum sensing, horizontal gene transfer, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.757327/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/09d97272e97a48a08a9bf7abfb46fb89

A compendium of predicted growths and derived symbiotic relationships between 803 gut microbes in 13 different diets

Authors: Rohan Singh, Anirban Dutta, Tungadri Bose, Sharmila S. Mande

Source: Current Research in Microbial Sciences, Vol 3, Iss , Pp 100127- (2022)

Subject Terms: Gut microbiome, Symbiotic relationships, Inter-species relationships, Dietary compositions, Metabolic simulations, Metabolic interactions, Microbiology, QR1-502, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666517422000244; https://doaj.org/toc/2666-5174

Access URL: https://doaj.org/article/8562af5175dd425e88719e86bde58aa2

Mechanism for Utilization of the Populus-Derived Metabolite Salicin by a Pseudomonas—Rahnella Co-Culture

Authors: Sanjeev Dahal, Gregory B. Hurst, Karuna Chourey, Nancy L. Engle, Leah H. Burdick, Jennifer L. Morrell-Falvey, Timothy J. Tschaplinski, Mitchel J. Doktycz, Dale A. Pelletier

Source: Metabolites, Vol 13, Iss 2, p 140 (2023)

Subject Terms: metabolic interactions, Populus microbiome, systems biology, multi-omic analysis, Pseudomonas, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2218-1989/13/2/140; https://doaj.org/toc/2218-1989

Access URL: https://doaj.org/article/6d9af6f3441449d3ba989845583bf224

Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment

Authors: Itai Opatovsky, Diego Santos-Garcia, Zhepu Ruan, Tamar Lahav, Shany Ofaim, Laurence Mouton, Valérie Barbe, Jiandong Jiang, Einat Zchori-Fein, Shiri Freilich

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-14 (2018)

Subject Terms: Bemisia tabaci, Metabolic interactions, Network analysis, Symbionts, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-4786-7; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/47f4d14b4cfb4f5dad7cef36ee0d1c7f

Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium

Authors: Barbara Bayer, Claus Pelikan, Meriel J. Bittner, Thomas Reinthaler, Martin Könneke, Gerhard J. Herndl, Pierre Offre

Source: mSystems, Vol 4, Iss 4 (2019)

Subject Terms: Nitrosopumilus, ammonia-oxidizing archaea, hydrogen peroxide, metabolic interactions, oxidative stress, proteomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/8b5948d26fab4715ae6689eb0cd2cd6e

An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers

Authors: Lau, Maggie C. Y., Kieft, Thomas L., Kuloyo, Olukayode, Linage-Alvarez, Borja, van Heerden, Esta, Lindsay, Melody R., Magnabosco, Cara, Wang, Wei, Wiggins, Jessica B., Guo, Ling, Perlman, David H., Kyin, Saw, Shwe, Henry H., Harris, Rachel L., Oh, Youmi, Yi, Min Joo, Purtschert, Roland, Slater, Greg F., Ono, Shuhei, Wei, Siwen, Li, Long, Lollar, Barbara Sherwood, Onstott, Tullis C.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2016 Dec 01. 113(49), E7927-E7936.

Access URL: https://www.jstor.org/stable/26472793

15 - Medical geology of zinc

Source: In Medical Geology of Africa 2024:629-646

12 - Medical geology of manganese

Source: In Medical Geology of Africa 2024:555-574