Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect

Authors: Brito, K.L., Alexandrino, A.O., Oliveira, A.R., Dias, U., Dias, Z.

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 20(3):1641-1653 Jun, 2023

Reversal and Indel Distance With Intergenic Region Information

Authors: Alexandrino, A.O., Brito, K.L., Oliveira, A.R., Dias, U., Dias, Z.

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 20(3):1628-1640 Jun, 2023

Emergence and detection of gastro‐enteric virulence genes in non‐pathogenic Vibrio cholerae: Implications for public health and water safety in African developmental regions

Authors: Bright Esegbuyota Igere

Source: Medicine Advances, Vol 2, Iss 4, Pp 361-374 (2024)

Subject Terms: enterobacterial repetitive intergenic consensus sequence polymerase chain reaction (ERIC‐PCR), gastro‐enteric virulent gene fingerprint, public health, SA‐NAG‐Vibrio cholerae type‐1/139, waterborne disease, water quality monitoring, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2834-4391; https://doaj.org/toc/2834-4405

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Exploring rhizobial diversity in tara (Caesalpinia spinosa) by trapping with pea (Pisum sativum)

Authors: S. Sangay-Tucto, C. Le Roux, D. Zúñiga-Dávila, R. Duponnois

Source: Scientia Agropecuaria, Vol 15, Iss 4, Pp 503-512 (2024)

Subject Terms: caesalpinia spinosa, pisum sativum, rhizobium, 16s-23s rdna intergenic spacer (igs), agroforestry, Agriculture, Agriculture (General), S1-972

File Description: electronic resource

Relation: https://revistas.unitru.edu.pe/index.php/scientiaagrop/article/view/6070; https://doaj.org/toc/2077-9917; https://doaj.org/toc/2306-6741

Access URL: https://doaj.org/article/6912a7ba30f74a3e8b58461ee41e87d0

Complete mitochondrial genome of the clearwing moth Synanthedon bicingulata (Lepidoptera: Sesiidae)

Authors: Woo Jin Kim, Seung Hyun Lee, Jeong Sun Park, Iksoo Kim

Source: Mitochondrial DNA. Part B. Resources, Vol 9, Iss 11, Pp 1528-1532 (2024)

Subject Terms: Synanthedon bicingulata, clearwing moth, mitochondrial genome, gene arrangement, intergenic spacer sequences, phylogeny, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/9401a05c444d4e0a88c17ad4dc5b0f55

Genome-wide functional annotation of variants: a systematic review of state-of-the-art tools, techniques and resources

Authors: Eleftherios Pilalis, Dimitrios Zisis, Christina Andrinopoulou, Theodora Karamanidou, Maria Antonara, Thanos G. Stavropoulos, Aristotelis Chatziioannou

Source: Frontiers in Pharmacology, Vol 16 (2025)

Subject Terms: genome-wide, variant annotation, genomic variation, whole-genome sequencing, intergenic, GWAS, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphar.2025.1474026/full; https://doaj.org/toc/1663-9812

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Laparoscopic Salpingectomy Regulates The Expression of Endometrial Homeobox Genes (HOXA9, HOXA10, HOXA11, HOXD10) and HOX Transcript Antisense Intergenic RNA in Women with Communicating Hydrosalpinx: A Prospective Study

Authors: Fatemeh Zafarani, Malek Soleimani Mehranjani, Firouzeh Ghaffari, Maryam Shahhoseini, Seyed Mohammadi Ali Shariatzadeh

Source: International Journal of Fertility and Sterility, Vol 18, Iss 4, Pp 344-351 (2024)

Subject Terms: endometrial receptivity, hox antisense intergenic rna (hotair), hox genes, hydrosalpinx, salpingectomy, Medicine (General), R5-920

File Description: electronic resource

Relation: https://www.ijfs.ir/article_715033_201d9f0784d410499a4bfbf46b9d68a9.pdf; https://doaj.org/toc/2008-076X; https://doaj.org/toc/2008-0778

Access URL: https://doaj.org/article/182cae895ff34d88bb8817fdfb7fc676

Comprehensive investigation of long non-coding RNA HOTAIR polymorphisms and cancer risk: a current meta-analysis encompassing 96,458 participants

Authors: B. Madhu Krishna, Pankaj Garg, Sravani Ramisetty, Ayalur Raghu Subbalakshmi, Prakash Kulkarni, Ravi Salgia, Sharad S. Singhal

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-22 (2024)

Subject Terms: Long non-coding RNA (lncRNA), HOX transcript antisense intergenic RNA (HOTAIR), Single nucleotide polymorphisms (SNPs), Gynecological cancer, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/0d99d8963d68446895dae769be7a8ec6

LincRNA-p21/AIF-1/CMPK2/NLRP3 pathway promoted inflammation, autophagy and apoptosis of human tubular epithelial cell induced by urate via exosomes

Authors: Jianbing Hao, Xinyu Guo, Siyu Wang, Xiaojun Guo, Kun Yuan, Ruihong Chen, Lirong Hao

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-15 (2024)

Subject Terms: Urate nephropathy, Long intergenic noncoding RNA-p21, Allograft inflammatory factor 1, Mitochondrial nucleotide phosphokinase 2, NLRP3, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/3ec970f1d07a47d48e600491e6a35f2d

Multifunctional noncoding regions in the mammarenavirus genome

Authors: Iwasaki, Masaharu ^{a, b, c, d}

Source: In Virology April 2025 605

The hidden bacterial microproteome

Authors: Fesenko, Igor ¹, Sahakyan, Harutyun ¹, Dhyani, Rajat ², Shabalina, Svetlana A. ¹, Storz, Gisela ^{2, ∗}, Koonin, Eugene V. ^{1, 3, ∗∗}

Source: In Molecular Cell 6 March 2025 85(5):1024-1041

Sorting Signed Permutations by Intergenic Reversals

Authors: Oliveira, A.R., Jean, G., Fertin, G., Brito, K.L., Bulteau, L., Dias, U., Dias, Z.

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 18(6):2870-2876 Jan, 2021

Sorting Permutations by Intergenic Operations

Authors: Oliveira, A.R., Jean, G., Fertin, G., Brito, K.L., Dias, U., Dias, Z.

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 18(6):2080-2093 Jan, 2021

The lncRNA LINC01605 promotes the progression of pancreatic ductal adenocarcinoma by activating the mTOR signaling pathway

Authors: Yu-Heng Zhu, Qin-Yuan Jia, Hong-Fei Yao, Zong-Hao Duan, Xue-Shi-Yu Ma, Jia-Hao Zheng, Yi-Fan Yin, Wei Liu, Jun-Feng Zhang, Rong Hua, Ding Ma, Yong-Wei Sun, Jian-Yu Yang, De-Jun Liu, Yan-Miao Huo

Source: Cancer Cell International, Vol 24, Iss 1, Pp 1-19 (2024)

Subject Terms: Pancreatic ductal adenocarcinoma, Long intergenic non-protein coding RNA 1605, Liver metastasis, mTOR signaling pathway, Cholesterol metabolism, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/1475-2867

Access URL: https://doaj.org/article/1bacd5c3238b402e9c0a00fb055ea2ff

Genetic Insights into Azoospermia and Severe Oligozoospermia: Discovering Seven SNPs through GWAS and In Silico Analysis

Authors: Alexia Chatziparasidou, Maria-Anna Kyrgiafini, Theologia Sarafidou, Katerina A. Moutou, Zissis Mamuris

Source: Current Issues in Molecular Biology, Vol 46, Iss 7, Pp 6522-6532 (2024)

Subject Terms: male infertility, genome-wide association study (GWAS), single nucleotide polymorphism (SNP), long intergenic non-coding RNAs (lincRNAs), Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/1467-3045/46/7/389; https://doaj.org/toc/1467-3037; https://doaj.org/toc/1467-3045

Access URL: https://doaj.org/article/183473e2f3764cf3b0b4726ddeaf10d4

CPSF1 inhibition promotes widespread use of intergenic polyadenylation sites and impairs glycolysis in prostate cancer cells

Authors: Tietz, Kiel T. ¹, McCluskey, Braedan M. ², Miller, Conor R. ¹, Li, Yingming ¹, Munro, Sarah A. ², Dehm, Scott M. ^{1, 3, 4, ∗}

Source: In Cell Reports 28 January 2025 44(1)

Virulence Characterization of Antimicrobial Resistant Clinical Isolates of Klebsiella pneumoniae circulating in Pakistani Population

Authors: Rabia Ilyas, Sidrah Asghar, Ayaz Ahmed

Source: Journal of Global Antimicrobial Resistance, Vol 39, Iss , Pp 11-12 (2024)

Subject Terms: Multidrug resistant(MDR), Enterobacterial Repetitive Intergenic Consensus Polymerase Chain Reaction (ERIC PCR), Klebsiella pneumoniae, Minimum Inhibitory Concentration(MIC), Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213716524002121; https://doaj.org/toc/2213-7165

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Analysis of trnL- trnL- trnF Intergenic Spacer and matK Sequences Combined with Morphological Observations Showed Pucuk Seminyak from Riau is Champereia manillana var. manillana Merr.

Authors: Dewi Indriyani Roslim, Herman, Deanne Yoshe Fidela Budiono, Isa Endar Cahyati, Wahyu Lestari, Linda Novita, Arief Priyadi

Source: Journal of Tropical Life Science, Vol 14, Iss 3, Pp 575 – 584-575 – 584 (2024)

Subject Terms: champereia manillana var. manillana, dna barcode, matk, morphology, pucuk seminyak, riau, trnl-trnl-trnf intergenic spacer, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/3296; https://doaj.org/toc/2087-5517; https://doaj.org/toc/2527-4376

Access URL: https://doaj.org/article/5452edd2897947559605ab613f57faea

Linc00265 in human disease: A comprehensive analysis of its implications in human disease pathobiology and therapeutic prospect

Authors: Dian, Wankang ^a, Zhang, Wenkai ^a, Yang, Luyu ^{b, ⁎}, Li, Jiaying ^{c, ⁎}, Fu, Shouzhi ^b, Ghorbanzadeh, Shadi ^d

Source: In Pathology - Research and Practice August 2024 260

Prevalence estimation of Tropheryma whipplei in duodenal biopsy tissues of Koreans

Authors: Sumi Yoon, Min Eui Hong, Soon Auck Hong, Tae-Hyoung Kim, Mi-Kyung Lee

Source: Annals of Clinical Microbiology and Antimicrobials, Vol 23, Iss 1, Pp 1-5 (2024)

Subject Terms: Tropheryma whipplei, Prevalence, Duodenal biopsy tissue, Korean, Real-time PCR, 16S–23S rRNA intergenic spacer, Therapeutics. Pharmacology, RM1-950, Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

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Relation: https://doaj.org/toc/1476-0711

Access URL: https://doaj.org/article/40f474ecfb0d4e5ebf0ba8d325cd648a