Weighted syncmer sampling improves long-read mapping

Authors: Quan, Wei, Kang, Jinjun, Deng, Yanfei, Liu, Zhuang, Zhu, Xiao, Quan, Guangri

Source: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :5232-5239 Dec, 2024

Relation: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Cancer Genomics: Identifying Biomarkers for Early Detection and Treatment

Authors: Husain, Saif O., Kaur, Amandeep, S, Chitra, Sharma, Vivek, Aminovna, Marupova Manzura, G, Rajesh

Source: 2024 IEEE International Conference on Communication, Computing and Signal Processing (IICCCS) Communication, Computing and Signal Processing (IICCCS), 2024 IEEE International Conference on. :1-6 Sep, 2024

Relation: 2024 IEEE International Conference on Communication, Computing and Signal Processing (IICCCS)

RapidGKC: GPU-Accelerated K-Mer Counting

Authors: Cheng, Yiran, Sun, Xibo, Luo, Qiong

Source: 2024 IEEE 40th International Conference on Data Engineering (ICDE) ICDE Data Engineering (ICDE), 2024 IEEE 40th International Conference on. :3810-3822 May, 2024

Relation: 2024 IEEE 40th International Conference on Data Engineering (ICDE)

Soil characteristics and bacterial community characteristics of shelterbelts of different tree species in black soil region of China

Authors: Jun Zhang, Wei Jing, Ke Ji, Yong Zhang

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-13 (2025)

Subject Terms: Farmland shelterbelts, Afforestation, Agroforestry system, High throughput sequencing, Soil bacterial diversity, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/0dc72cee4d824512a759c560f7ed4d70

DNA metabarcoding and its potential in microbial risk assessment in waste sorting plants

Authors: Elke Eriksen, Pål Graff, Alexander Eiler, Anne Straumfors, Anani Komlavi Afanou

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-11 (2025)

Subject Terms: Occupational exposure, High-throughput sequencing, Human pathogens, Bacteria, Fungi, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/9322d46797ee4ca1949fdc4a70222ab4

piRNAs and circRNAs acting as diagnostic biomarkers in clear cell renal cell carcinoma

Authors: Yin Xu, Huiling Liu, Yingzhi Zhang, Jing Luo, Haomin Li, Caiyong Lai, Liping Shi, Baoli Heng

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-14 (2025)

Subject Terms: Clear cell renal cell carcinoma, piRNAs, Circular RNAs, High-throughput sequencing, Diagnosis, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/fd224b5c5dd54f81b10a2fc111efc0ff

MiRNA expression profiling and clinical implications in prostate cancer across various stages

Authors: Zhengjie Xiang, Tao Lin, Jian Ling, Zuhuan Xu, Ruizhen Huang, Honglin Hu

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-10 (2025)

Subject Terms: Prostate cancer, MicroRNAs, High-throughput sequencing, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/2b0a72ba49dd48718f335eff166fd0f4

A comparison and evaluation of strategies for bulk sequencing of mitogenomes from museum collections

Authors: Yao‐Wei Zhu, Mao He, Hou‐Shuai Wang, Dan Liang, Peng Zhang

Source: Methods in Ecology and Evolution, Vol 16, Iss 3, Pp 530-545 (2025)

Subject Terms: DNA labelling, high‐throughput sequencing, mitochondrial genomes, mtDNA enrichment, museomics, Ecology, QH540-549.5, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2041-210X

Access URL: https://doaj.org/article/2796f9d7da58413ba0de2fc967ec4879

Unraveling the role of lncRNAs and their associated nearby coding genes in the pathogenesis of systemic lupus erythematosus

Authors: Tao Liu, Mingyue Yang, Xiunan Feng, Xiaojuan Zou, Ying Xia, Lu Chen, Zixin Gao, Ling Zhao, Xiaosong Wang

Source: Arthritis Research & Therapy, Vol 27, Iss 1, Pp 1-15 (2025)

Subject Terms: High-throughput sequencing, Long non-coding RNA, Nearby coding genes, Peripheral blood mononuclear cells, Systemic lupus erythematosus, Diseases of the musculoskeletal system, RC925-935

File Description: electronic resource

Relation: https://doaj.org/toc/1478-6362

Access URL: https://doaj.org/article/56b838207b75497ba0cc32e8bdeb4543

Analysis of archaeal community structure in pit mud of strong-flavor Baijiu from different regions

Authors: MA Long, YAN Wei, WANG Shuyu, LIN Yixin, WEI Junqiang, TANG Yun

Source: Zhongguo niangzao, Vol 44, Iss 2, Pp 185-190 (2025)

Subject Terms: strong-flavor baijiu, pit mud, archaeal community, high-throughput sequencing, hierarchical clustering analysis, Biotechnology, TP248.13-248.65, Food processing and manufacture, TP368-456

File Description: electronic resource

Relation: https://manu61.magtech.com.cn/zgnz/fileup/0254-5071/PDF/0254-5071-2025-44-2-185.pdf; https://doaj.org/toc/0254-5071

Access URL: https://doaj.org/article/8ff529e7eda5459ea62054203501e8e8

Using high-throughput sequencing of 16S rDNA technique to analyze the features of intestinal microbiota in individuals with herpes zoster

Authors: DENG Xiaoyue, WANG Weizhen, ZHANG Yingzheng

Source: Pifu-xingbing zhenliaoxue zazhi, Vol 32, Iss 2, Pp 108-114 (2025)

Subject Terms: herpes zoster, 16s rdna high-throughput sequencing, intestinal microbiota, Dermatology, RL1-803

File Description: electronic resource

Relation: http://pfxbzlx.gdvdc.com/EN/10.3969/j.issn.1674-8468.2025.02.006; https://doaj.org/toc/1674-8468

Access URL: https://doaj.org/article/42b7fa2308a64d6eaabf08446a18d6c1

Periodic detection and disinfection maintenance of dental unit waterlines in dental simulation head model laboratories

Authors: Biyao Li, Yuya Hu, Yiqi Wang, Chengqi Zhang, Zimo Wang, Xujie Peng, Jianying Feng

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-10 (2025)

Subject Terms: Dental simulation head model laboratory, Dental unit waterlines, Microbial contamination, Organochlorine disinfectant, Chlorine dioxide, High-throughput sequencing, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/92c4a71bc99e425c8bf4dc58da0e8eaa

Soil organic carbon accumulation mechanisms in soil amended with straw and biochar: entombing effect or biochemical protection?

Authors: Yuhan Yuan, Yao Liang, Hongguang Cai, Jingchao Yuan, Cuilan Li, Hang Liu, Chang Zhang, Lichun Wang, Jinjing Zhang

Source: Biochar, Vol 7, Iss 1, Pp 1-17 (2025)

Subject Terms: Amino sugar, Microbial necromass, Microbial community, Microbial biomass, Nuclear magnetic resonance, High throughput sequencing, Environmental sciences, GE1-350, Agriculture

File Description: electronic resource

Relation: https://doaj.org/toc/2524-7867

Access URL: https://doaj.org/article/ad8d958bfe3f4292a2400beaf1b53dae

A ribodepletion and tagging protocol to multiplex samples for RNA-seq based virus detection: application to the cassava virome

Authors: Daniel H. Otron, Justin S. Pita, Murielle Hoareau, Fidèle Tiendrébéogo, Jean-Michel Lett, Pierre Lefeuvre

Source: Virology Journal, Vol 22, Iss 1, Pp 1-10 (2025)

Subject Terms: Cassava, Virome, Ribodepletion, RNaseH, Multiplexing, High-throughput sequencing, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1743-422X

Access URL: https://doaj.org/article/5b329e645dce4b3fae21f6710038a7bc

Immune-mediated mechanisms in acute osteofascial compartment syndrome: insights from multi-omics analysis

Authors: Qinzhen Lu, He Ling, Yonghui Lao, Junjie Liu, Wei Su, Zhao Huang

Source: European Journal of Medical Research, Vol 30, Iss 1, Pp 1-20 (2025)

Subject Terms: Acute osteofascial compartment syndrome, Ischemic damage, High-throughput sequencing, Ferroptosis, CGAS–STING, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2047-783X

Access URL: https://doaj.org/article/a76792eddd3c4b469178a8ae4bd22520

A GDPR-compliant solution for analysis of large-scale genomics datasets on HPC cloud infrastructure

Authors: Silvia Gioiosa, Beatrice Chiavarini, Mattia D’Antonio, Giuseppe Trotta, Balasubramanian Chandramouli, Juan Mata Naranjo, Giuseppa Muscianisi, Mirko Cestari, Elisa Rossi

Source: Journal of Big Data, Vol 12, Iss 1, Pp 1-16 (2025)

Subject Terms: Cloud-computing, Bioinformatics analyses, High-throughput sequencing analysis, GDPR-compliant, Cloud-secure environment, Sensitive data, Computer engineering. Computer hardware, TK7885-7895, Information technology, T58.5-58.64, Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://doaj.org/toc/2196-1115

Access URL: https://doaj.org/article/20f5ad0ffaff405cb659e3dbf24aee5f

Analysis of Physicochemical Properties, Volatile Flavor Compounds and Bacterial Communities in Broad Bean Paste from Sichuan and Chongqing

Authors: TU Dawei, MA Hongneng, LI Jia, KANG Junhan, LIU Wenjun

Source: Shipin Kexue, Vol 46, Iss 3, Pp 187-195 (2025)

Subject Terms: broad bean paste, headspace solid-phase microextraction-gas chromatography-mass spectrometry, volatile flavor compounds, high-throughput sequencing, Food processing and manufacture, TP368-456

File Description: electronic resource

Relation: https://www.spkx.net.cn/fileup/1002-6630/PDF/2025-46-3-021.pdf; https://doaj.org/toc/1002-6630

Access URL: https://doaj.org/article/273d3b5797d94dfaa4f600a1184a9b53

Analysis of fungal flora diversity in low-temperature Daqu with different fermentation stages

Authors: LI Junwei, HOU Qiangchuan, LI Silin, XIANG Yun, DONG Xiaoyuan, GUO Zhuang, LI Liang

Source: Zhongguo niangzao, Vol 44, Iss 1, Pp 100-104 (2025)

Subject Terms: low-temperature daqu, fermentation process, illumina miseq high-throughput sequencing, fungal, succession, Biotechnology, TP248.13-248.65, Food processing and manufacture, TP368-456

File Description: electronic resource

Relation: https://manu61.magtech.com.cn/zgnz/fileup/0254-5071/PDF/0254-5071-2025-44-1-100.pdf; https://doaj.org/toc/0254-5071

Access URL: https://doaj.org/article/132ebd700666408a802633d721b8b1e3

Changes of bacterial community and its metabolic characteristic in fermentation process of strong-flavor Baijiu fermented grains based on PacBio sequencing

Authors: LIU Yao, TIAN Xinhui, MA Chao, WANG Sisi, TANG Yuming, FENG Jun, LIU Chengyuan, LIU Maoke

Source: Zhongguo niangzao, Vol 44, Iss 1, Pp 80-84 (2025)

Subject Terms: fermented grains, strong-flavor baijiu, high throughput sequencing, community structure, metabolic characteristic, Biotechnology, TP248.13-248.65, Food processing and manufacture, TP368-456

File Description: electronic resource

Relation: https://manu61.magtech.com.cn/zgnz/fileup/0254-5071/PDF/0254-5071-2025-44-1-80.pdf; https://doaj.org/toc/0254-5071

Access URL: https://doaj.org/article/14c6f57bd3eb427989c36a367a50234e

High-throughput sequencing revealed the symptomatic common bean (Phaseolus vulgaris L.) virome in Iran

Authors: Sajad Astaraki, Mohammad Reza Atighi, Masoud Shams-bakhsh

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-14 (2025)

Subject Terms: High throughput sequencing, Phaseolus vulgaris, CMV, BCTIV, BCMV, SeCTV, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/1e7281c0f17b4ab2971c11043120e17a