Distinct Cutibacterium acnes subspecies defendens strains classified by multi-omics dissection alleviate inflammatory skin lesions of a rosacea-like mouse model

Authors: Hanseol Kim, Kihyun Lee, Ji Young Lee, Bo Eun Kwon, Hyun Jeong Kim, Hyunkyung Park, Taekyung Kim, Jun-Gu Kwak, Joung Eun Choi, Kwang Hee Hong, Jongsik Chun, Changsik Shin

Source: Frontiers in Microbiomes, Vol 3 (2024)

Subject Terms: Cutibacterium acnes subsp. defendens, genomic heterogeneity, acnecin, ultraviolet, amino acid metabolism, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/frmbi.2024.1362408/full; https://doaj.org/toc/2813-4338

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Deciphering genomic complexity: Understanding intratumor heterogeneity, clonal evolution, and therapeutic vulnerabilities in oral squamous cell carcinoma

Authors: Veeraraghavan, Vishnu Priya ^a, Doni, Bharati R. ^b, Dasari, Arun Kumar ^c, Patil, Chaitra ^d, Rao, Krishna A. ^e, Patil, Santosh R. ^{f, ⁎}

Source: In Oral Oncology Reports June 2024 10

Interplay of RNA m6A Modification-Related Geneset in Pan-Cancer

Authors: Boyu Zhang, Yajuan Hao, Haiyan Liu, Jiarun Wu, Lu Lu, Xinfeng Wang, Akhilesh K. Bajpai, Xi Yang

Source: Biomedicines, Vol 12, Iss 10, p 2211 (2024)

Subject Terms: m6A, pan-cancer, prognosis, immune cell infiltration, tumor stemness, genomic heterogeneity, Biology (General), QH301-705.5

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Relation: https://www.mdpi.com/2227-9059/12/10/2211; https://doaj.org/toc/2227-9059

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Inflammation-related signature for prognostic prediction, tumor immune, genomic heterogeneity, and drug choices in prostate cancer: Integrated analysis of bulk and single-cell RNA-sequencing

Authors: Zhu, Weian ^{a, 1}, Huang, Jiongduan ^{a, 1}, Wu, Jianjie ^a, Wu, Chenglun ^a, Ye, Fengxi ^b, Li, Xiang ^{c, ∗}, Lai, Wenjie ^{d, a, ∗∗}

Source: In Heliyon November 2023 9(11)

Three-dimensional genome landscape comprehensively reveals patterns of spatial gene regulation in papillary and anaplastic thyroid cancers: a study using representative cell lines for each cancer type

Authors: Linlin Zhang, Miaomiao Xu, Wanchun Zhang, Chuanying Zhu, Zhilei Cui, Hongliang Fu, Yufei Ma, Shuo Huang, Jian Cui, Sheng Liang, Lei Huang, Hui Wang

Source: Cellular & Molecular Biology Letters, Vol 28, Iss 1, Pp 1-23 (2023)

Subject Terms: Papillary thyroid cancer, Anaplastic thyroid cancer, Genomic heterogeneity, Topologically associating domains (TADs), High-throughput chromosome conformation capture (Hi-C), A/B compartment switches, Cytology, QH573-671

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Relation: https://doaj.org/toc/1689-1392

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Multi-omics analysis reveals a macrophage-related marker gene signature for prognostic prediction, immune landscape, genomic heterogeneity, and drug choices in prostate cancer

Authors: Weian Zhu, Jianjie Wu, Jiongduan Huang, Dongming Xiao, Fengao Li, Chenglun Wu, Xiaojuan Li, Hengda Zeng, Jiayu Zheng, Wenjie Lai, Xingqiao Wen

Source: Frontiers in Immunology, Vol 14 (2023)

Subject Terms: prostate cancer, macrophage-related marker gene, prognostic signature, tumor immunity, genomic heterogeneity, drug choices, Immunologic diseases. Allergy, RC581-607

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Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2023.1122670/full; https://doaj.org/toc/1664-3224

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Tumor heterogeneity and the potential role of liquid biopsy in bladder cancer

Authors: Hai‐Ming Huang, Hai‐Xia Li

Source: Cancer Communications, Vol 41, Iss 2, Pp 91-108 (2021)

Subject Terms: bladder cancer, genomic heterogeneity, transcriptome heterogeneity, liquid biopsy, circulating tumor DNA, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

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Relation: https://doaj.org/toc/2523-3548

Access URL: https://doaj.org/article/69bec8dcb14f45e8a995d57bd05261f6

Inter-tumor genomic heterogeneity of breast cancers: comprehensive genomic profile of primary early breast cancers and relapses

Authors: Caterina Fumagalli, Alberto Ranghiero, Sara Gandini, Federica Corso, Sergio Taormina, Elisa De Camilli, Alessandra Rappa, Davide Vacirca, Giuseppe Viale, Elena Guerini-Rocco, Massimo Barberis

Source: Breast Cancer Research, Vol 22, Iss 1, Pp 1-11 (2020)

Subject Terms: Breast cancer, Recurrence, Genomic heterogeneity, TP53, MYC, Next-generation sequencing, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

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Relation: http://link.springer.com/article/10.1186/s13058-020-01345-z; https://doaj.org/toc/1465-542X

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The Genomic Landscape of Divergence Across the Speciation Continuum in Island-Colonising Silvereyes (Zosterops lateralis)

Authors: Ashley T. Sendell-Price, Kristen C. Ruegg, Eric C. Anderson, Claudio S. Quilodrán, Benjamin M. Van Doren, Vinh L. Underwood, Tim Coulson, Sonya M. Clegg

Source: G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 3147-3163 (2020)

Subject Terms: genomic heterogeneity, gene flow, genomic islands, genomic valleys, simulated divergence, rad sequencing, genomic landscape, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2160-1836

Access URL: https://doaj.org/article/10ed6b11038a4e7cada36a8354f8b8f7

A Systematic Analysis Reveals the Prognostic and Immunological Role of Reptin/RUVBL2 in Human Tumors

Authors: Xiaoru Su, Gaoming Zheng, Zhifang Gui, Xiao Yang, Lahong Zhang, Feng Pan

Source: Frontiers in Genetics, Vol 13 (2022)

Subject Terms: reptin, cancer, prognosis, genomic heterogeneity, immune infiltration, Genetics, QH426-470

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Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.911223/full; https://doaj.org/toc/1664-8021

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Complementary Sequential Circulating Tumor Cell (CTC) and Cell-Free Tumor DNA (ctDNA) Profiling Reveals Metastatic Heterogeneity and Genomic Changes in Lung Cancer and Breast Cancer

Authors: Say Li Kong, Xingliang Liu, Swee Jin Tan, Joyce A. Tai, Ler Yee Phua, Huay Mei Poh, Trifanny Yeo, Yong Wei Chua, Yu Xuan Haw, Wen Huan Ling, Raymond Chee Hui Ng, Tira J. Tan, Kiley Wei Jen Loh, Daniel Shao-Weng Tan, Quan Sing Ng, Mei Kim Ang, Chee Keong Toh, Yi Fang Lee, Chwee Teck Lim, Tony Kiat Hon Lim, Axel M. Hillmer, Yoon Sim Yap, Wan-Teck Lim

Source: Frontiers in Oncology, Vol 11 (2021)

Subject Terms: circulating tumor cells, cell-free tumor DNA, amplicon-sequencing, metastatic signatures, genomic heterogeneity, evolving alterations, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

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Relation: https://www.frontiersin.org/articles/10.3389/fonc.2021.698551/full; https://doaj.org/toc/2234-943X

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Genomic Heterogeneity and Clonal Evolution in Gastroesophageal Junction Cancer Revealed by Single Cell DNA Sequencing

Authors: Qingke Duan, Chao Tang, Zhao Ma, Chuangui Chen, Xiaobin Shang, Jie Yue, Hongjing Jiang, Yan Gao, Bo Xu

Source: Frontiers in Oncology, Vol 11 (2021)

Subject Terms: single cell sequencing, gastroesophageal junction cancer, genomic heterogeneity, clonal evolution, metastasis, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

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Relation: https://www.frontiersin.org/articles/10.3389/fonc.2021.672020/full; https://doaj.org/toc/2234-943X

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Multiple Initial Culture Conditions Enhance the Establishment of Cell Lines from Primary Ovarian Cancer Specimens

Authors: Weber, Barbara L., Carroll, Richard G.

Source: In Vitro Cellular & Developmental Biology. Animal, 2006 Mar 01. 42(3/4), 58-62.

Access URL: https://www.jstor.org/stable/4295665

Application of amplicon-based targeted sequencing with the molecular barcoding system to detect uncommon minor EGFR mutations in patients with treatment-naïve lung adenocarcinoma

Authors: Kei Namba, Shuta Tomida, Takehiro Matsubara, Yuta Takahashi, Eisuke Kurihara, Yusuke Ogoshi, Takahiro Yoshioka, Tatsuaki Takeda, Hidejiro Torigoe, Hiroki Sato, Kazuhiko Shien, Hiromasa Yamamoto, Junichi Soh, Kazunori Tsukuda, Shinichi Toyooka

Source: BMC Cancer, Vol 19, Iss 1, Pp 1-9 (2019)

Subject Terms: Non-small cell lung cancer, Epidermal growth factor receptor, Compound mutations, Molecular barcoding, Genomic heterogeneity, Patient genotype, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

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Relation: http://link.springer.com/article/10.1186/s12885-019-5374-1; https://doaj.org/toc/1471-2407

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Amplification of 3q26.2, 5q14.3, 8q24.3, 8q22.3, and 14q32.33 Are Possible Common Genetic Alterations in Oral Cancer Patients

Authors: Melvin A. Ambele, Andre van Zyl, Michael S. Pepper, Marlene B. van Heerden, Willie F. P. van Heerden

Source: Frontiers in Oncology, Vol 10 (2020)

Subject Terms: oral squamous cell carcinomas, head and neck cancer, genomic heterogeneity, intratumor clonal heterogeneity, intertumoral clonal diversity, OncoScan® FFPE assay, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

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Relation: https://www.frontiersin.org/article/10.3389/fonc.2020.00683/full; https://doaj.org/toc/2234-943X

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Deciphering Genomic Heterogeneity and the Internal Composition of Tumour Activities through a Hierarchical Factorisation Model

Authors: José Carbonell-Caballero, Antonio López-Quílez, David Conesa, Joaquín Dopazo

Source: Mathematics, Vol 9, Iss 21, p 2833 (2021)

Subject Terms: bioinformatics, cancer, genomic heterogeneity, variability, matrix factorisation, Mathematics, QA1-939

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Relation: https://www.mdpi.com/2227-7390/9/21/2833; https://doaj.org/toc/2227-7390

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Genomic Epidemiology and Heterogeneity of SRLV in Italy from 1998 to 2019

Authors: Moira Bazzucchi, Ilaria Pierini, Paola Gobbi, Silvia Pirani, Claudia Torresi, Carmen Iscaro, Francesco Feliziani, Monica Giammarioli

Source: Viruses, Vol 13, Iss 12, p 2338 (2021)

Subject Terms: SRLV, genomic heterogeneity, phylogenetic analyzes, Microbiology, QR1-502

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Relation: https://www.mdpi.com/1999-4915/13/12/2338; https://doaj.org/toc/1999-4915

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Enterotoxin Gene Distribution and Genotypes of Bacillus cereus sensu lato Isolated from Cassava Starch

Authors: Jennifer Sánchez-Chica, Margarita M. Correa, Angel E. Aceves-Diez, Laura M. Castañeda-Sandoval

Source: Toxins, Vol 13, Iss 2, p 131 (2021)

Subject Terms: cassava starch, Bacillus cereus, enterotoxin, emetic toxin, toxigenic diversity, genomic heterogeneity, Medicine

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Relation: https://www.mdpi.com/2072-6651/13/2/131; https://doaj.org/toc/2072-6651

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Future Directions in the Treatment of Osteosarcoma

Authors: Alannah Smrke, Peter M. Anderson, Ashish Gulia, Spyridon Gennatas, Paul H. Huang, Robin L. Jones

Source: Cells, Vol 10, Iss 1, p 172 (2021)

Subject Terms: osteosarcoma, chemotherapy, MAP, immunotherapy, genomic heterogeneity, adolescent and young adult, Cytology, QH573-671

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Relation: https://www.mdpi.com/2073-4409/10/1/172; https://doaj.org/toc/2073-4409

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Intratumoral Genomic Heterogeneity May Hinder Precision Medicine Strategies in Patients with Serous Ovarian Carcinoma

Authors: Kohei Nakamura, Eriko Aimono, Shigeki Tanishima, Mitsuho Imai, Akiko Kawano Nagatsuma, Hideyuki Hayashi, Yuki Yoshimura, Kentaro Nakayama, Satoru Kyo, Hiroshi Nishihara

Source: Diagnostics, Vol 10, Iss 4, p 200 (2020)

Subject Terms: ovarian carcinoma, genomic heterogeneity, precision medicine, DNA sequencing, Medicine (General), R5-920

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Relation: https://www.mdpi.com/2075-4418/10/4/200; https://doaj.org/toc/2075-4418

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