Evolutionary analysis of the DHHCs in Saccharinae

Authors: Hao Wen, Xinyu Liu, Xueting Zhao, Tingting Zhao, Cuilian Feng, Hailong Chang, Jungang Wang, Jishan Lin

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-14 (2025)

Subject Terms: Saccharinae, DHHC, Gene duplications, Sucrose storage, Evolutionary, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/cff648ddc2f74f11b7b2d4f2b63a8c27

Comparative analysis of SIMILAR to RCD ONE (SRO) family from tetraploid cotton species and their diploid progenitors depict their significance in cotton growth and development

Authors: Muhammad Shaban, Riaz Tabassum, Iqrar Ahmad Rana, Rana Muhammad Atif, Muhammad Abubakkar Azmat, Zubair Iqbal, Sajid Majeed, Muhammad Tehseen Azhar

Source: Journal of Cotton Research, Vol 7, Iss 1, Pp 1-13 (2024)

Subject Terms: Cotton, SRO, miRNAs, Gene duplications, Gene expression, Ovule development, Plant culture, SB1-1110

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Relation: https://doaj.org/toc/2523-3254

Access URL: https://doaj.org/article/3bb032088cca4ba49f5eb14b757e9669

Plant Genomics 2019

Contributors: You, Frank M.

Subject Terms: Aristolochia, chloroplast genome, molecular evolution, compare analysis, phylogeny, brassinosteroid-signaling kinase, gene family, expression profile, alternative splicing, intron retention, genome-wide analysis, drought tolerance, foxtail millet, LIM genes, transgenic rice, protein phosphatase (PP2C), cotton, syntenic relationships, expression patterns, evolutionary analysis, Populus trichocarpa, multiple organellar RNA editing factor, drought stress, RNA editing, genome, β-glucosidase, Brassica rapa, BrBGLU10, pollen development, co-expression analysis, VQ genes family, Eucalyptus grandis, expression pattern, plant hormones, abiotic stress, calcium-dependent protein kinases, CDPK-related kinases, cucurbitaceae, hst1, Na+ accumulation, SNP, rapid generation advance, salt tolerant, variant annotation, whole-genome sequencing, expression, genome-wide, identification of peroxidase genes, duplication pattern, stress, cassava, ABCDE model, cereals, evolutionary relationships, flower organ identity, floral speciation, MADS-box genes, maize, ZmTCP, natural variation, subgroup IId, CsWRKY7, flowering, Arabidopsis, Camellia sinensis, pomegranate, sequence diversity, site-specific selection, tomato, MADS-box, floral organ, fruit development, polygalacturonase (PGs), pectin methylesterase (PMEs), collinearity analysis, gene duplications, expression profiling, grapevine, Rehmannia glutinosa L., replant disease, rhizosphere microbes, NB-LRR, plant hormone, apple, aquaporin, functional analysis, stress tolerance, Salicaceae, phylogenetic relationship, plastid genome, comparative genomics, repeat sequences, stress marker genes, sesame, gene co-expression, abiotic stress tolerance, hub genes, meta-analysis, agrobacterium, transient expression, virus-induced gene silencing (VIGS), tobacco rattle virus (TRV), cassava (Manihot esculenta), chalcone synthase, chromatin accessibility, epigenetic inheritance, genetic engineering, methylation, ODNs, CRISPR/Cas9, genome editing, plant breeding, multiplex genome editing, crop improvement, TALEN, ZFN, biotic stress, avocado, carotenoid biosynthesis, mesocarp, seed, de novo assembly from short read sequencing, full-length transcript sequencing, differentially expressed genes, gene dosage, pigment, turnip, gene expression, antioxidant, nutritional quality, B3 superfamily, transcription factor, ovule abortion, Vitis vinifera, expression analysis, cold response, Pittosporum tobira, leaf variegation, linoleic acid, ROS scavenging enzyme, heat shock protein, invasive weed, Rhizoctonia solani, phytohormone signaling, systemic signal, plant defense, calcium signaling, ABA, drought, salinity, citrulline, genome-wide association study, haplotype, watermelon, acetolactate synthase, ferrochelatase, rice, large grain gene, large grain-isogenic Koshihikari, fine mapping, NGS, GW2, co-integration, gene recombination, semidwarf gene, d60, linkage, chromosome 2, Brachypodium, comparative chromosome barcoding, dysploidy, karyotype structure and evolution, model grass genus, molecular cytogenetics, polyploidy, plant genome, artificial microRNA, gene silencing, Lagerstroemia indica, ornamental value, anthocyanins, leaf coloration, directional improvement, YABBY, pineapple, subcellular localization, oak species identification, Quercus, mutation hotspots, Centranthera grandiflora Benth, transcriptome, catalpol biosynthesis, acteoside biosynthesis, azafrin biosynthesis, wheat, Dasypyrum villosum, alien substitution line, GISH, molecular marker, marker-assisted selection, regulation, RNA-seq, biosynthesis pathway, chalcones, stilbenes, common bean, Fusarium oxysproum, plant–pathogen interaction, metabolome, evolution, genome fractionation, ABC transporters, transcription factors, transposable elements, whole-genome duplication, RNA-sequencing, ChIP-sequencing, transcriptional regulatory mechanism, data integration, karyopherin, solanum tuberosum, chemical fungicide, disease control, Neoscytalidium dimidiatum, royal poinciana, stem canker, UAE, bioinformatics, VvGAST, GASR, Cis-elements, wheat genome, kernel hardness, Puroindoline, Puroindoline b-2 variants, genotype-to-phenotype association, synteny, phylogenetic analysis, genomic selection, missing data, minor allele frequency, GDSL lipase, GPAT6, cutin, habaneros, Capsicum chinense, fruit, RNA-Seq, flax, genome-wide association study (GWAS), single nucleotide polymorphism (SNP), prediction accuracy, quantitative trait loci (QTL), quantitative trait nucleotides (QTNs), Fabaceae, Lupinus, glutamine synthetase (GS), phosphoenolpyruvate carboxylase (PEPC), gene families, duplication/triplication, structural genomics, genome organization, genome evolution, microRNA, miRNA156, seed development, fatty acid synthesis, linseed flax, anthocyanin biosynthetic genes, cis-regulatory motifs, DEGs, network analysis, qRT-PCR, reddish purple Chinese cabbage, abscisic acid, flavonolignans, metabolite profiling, Silybum marianum, silymarin, aquaporins, bright yellow-2 suspension cells, Nicotiana tabacum, substrate specificity, TaCKX1, TaCKX expression, grain yield, cytokinins, phytohormones, RNAi, wheat spikes, genome-wide identification, 2OGD family, hormone biosynthetic and metabolism genes, tomato fruit ripening, DNA methylation, phenomics, Philosophy

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Access URL: https://directory.doabooks.org/handle/20.500.12854/101421
https://mdpi.com/books/pdfview/book/7518

Allele-Specific Hormone Dynamics in Highly Transgressive F2 Biomass Segregants in Sugarcane (Saccharum spp.)

Authors: Noor-ul Ain, Habiba, Ray Ming

Source: Plants, Vol 13, Iss 16, p 2247 (2024)

Subject Terms: sugarcane biomass, extreme segregants, gene duplications, auxin, jasmonic acid, abscisic acid, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/13/16/2247; https://doaj.org/toc/2223-7747

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Genome-wide identification reveals conserved carbohydrate-active enzyme repertoire in termites

Authors: Shulin He, Amrita Chakraborty, Fei Li, Cao Zhou, Binchuan Zhang, Bin Chen, Bin Jiang

Source: Frontiers in Forests and Global Change, Vol 6 (2023)

Subject Terms: wood digestion, glycosyl transferase, glycoside hydrolase, gene duplications, gene losses, Forestry, SD1-669.5, Environmental sciences, GE1-350

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/ffgc.2023.1240804/full; https://doaj.org/toc/2624-893X

Access URL: https://doaj.org/article/92bdc9a5109d4adea4d9cc0971414249

A chromosome-scale genome assembly of the grape powdery mildew pathogen Erysiphe necator reveals its genomic architecture and previously unknown features of its biology

Authors: Alex Z. Zaccaron, Tara Neill, Jacob Corcoran, Walter F. Mahaffee, Ioannis Stergiopoulos

Source: mBio, Vol 14, Iss 4 (2023)

Subject Terms: Erysiphales, genome architecture, biotrophic lifestyle, transposable elements, gene duplications, copy number variation, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/1e746af98f1e42cc9a61e81763a817d0

Expansion of viral genomes with viral protein genome linked copies

Authors: Warsaba, Reid ^{a, b, 1}, Salcedo-Porras, Nicolas ^{a, b, 1}, Flibotte, Stephane ^{b, c}, Jan, Eric ^{a, b, ∗}

Source: In Virology December 2022 577:174-184

The pathogenic p.Gln319Ter variant is not causing congenital adrenal hyperplasia when inherited in one of the duplicated CYP21A2 genes

Authors: Pavlos Fanis, Nicos Skordis, Meropi Toumba, Michalis Picolos, George A. Tanteles, Vassos Neocleous, Leonidas A. Phylactou

Source: Frontiers in Endocrinology, Vol 14 (2023)

Subject Terms: CYP21A2, 21-hyrdroxylase deficiency, RCCX, gene duplications, CAH, Diseases of the endocrine glands. Clinical endocrinology, RC648-665

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Relation: https://www.frontiersin.org/articles/10.3389/fendo.2023.1156616/full; https://doaj.org/toc/1664-2392

Access URL: https://doaj.org/article/a1eec0745c8d402093048b3fcf3512cb

The Amazing World of IDPs in Human Diseases

Contributors: Monti, Simona Maria, De Simone, Giuseppina, Langella, Emma

Subject Terms: alpha-synuclein, NMR, secondary structure propensity, pre-structured motifs (PreSMos), intrinsically disordered protein, ubiquitin-proteasome system, intrinsically disordered proteins, protein misfolding, molecular recognition features, cancer, neurodegenerative diseases, protein degradation, EPR spectroscopy, isothermal titration calorimetry, protein-ligand interaction, site-directed spin labeling, protein structural dynamics, WASp interacting protein, protein–protein interactions, actin, cytoskeleton remodeling, SH3 domain, proline-rich motif, single nucleotide variants, interface core and rim, human disease, intrinsically disordered regions, linear motifs, gene duplications, de novo, evolutionary origin, circular dichroism, flexibility, fluorescence, importin, isothermal titration calorimetry (ITC), molecular docking, nuclear magnetic resonance (NMR), nuclear protein 1 (NPR1), peptide, Methyl-CpG-binding protein 2 (MeCP2), Rett syndrome, intrinsically disordered protein (IDP), protein stability, protein-DNA interaction, proteostasis, ubiquitin independent degradation, NADH-26S proteasome, Research and information: general, Biology, life sciences

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Access URL: https://directory.doabooks.org/handle/20.500.12854/76426
https://mdpi.com/books/pdfview/book/3861

Update of the keratin gene family: evolution, tissue-specific expression patterns, and relevance to clinical disorders

Authors: Minh Ho, Brian Thompson, Jeffrey Nicholas Fisk, Daniel W. Nebert, Elspeth A. Bruford, Vasilis Vasiliou, Christopher G. Bunick

Source: Human Genomics, Vol 16, Iss 1, Pp 1-21 (2022)

Subject Terms: Keratin, Intermediate filament, Evolutionary blooms, Gene expression, Gene duplications, Synteny, Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1479-7364

Access URL: https://doaj.org/article/0c5797b957324389bba38853d2ec98bb

Genome-wide analysis of R2R3-MYB genes in cultivated peanut (Arachis hypogaea L.): Gene duplications, functional conservation, and diversification

Authors: Sijian Wang, Zhe Xu, Yiwen Yang, Weifang Ren, Jiahai Fang, Liyun Wan

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: cultivated peanut, R2R3-MYB transcription factors, allotetraploid, gene duplications, gene expression, functional diversity, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1102174/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/59cfc8a471ce4a33930ea201fa2d9391

Differential Expression of Two Copies of the irmA Gene in the Enteroaggregative E. coli Strain 042

Authors: M. Bernabeu, S. Aznar, A. Prieto, M. Hüttener, A. Juárez

Source: Microbiology Spectrum, Vol 10, Iss 4 (2022)

Subject Terms: enteroaggregative E. coli, 042, gene duplications, aec69, irmA, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/2139a45e920f4e4ab71795a3491cbe5e

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Authors: Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi-min Hsiao, Sylvie Hudaverdian, Emmanuelle Jacquin-Joly, Edward B. James, Spencer Johnston, Benjamin Joubard, Gaëlle Le Goff, Gaël Le Trionnaire, Pablo Librado, Shanlin Liu, Eric Lombaert, Hsiao-ling Lu, Martine Maïbèche, Mohamed Makni, Marina Marcet-Houben, David Martínez-Torres, Camille Meslin, Nicolas Montagné, Nancy A. Moran, Daciana Papura, Nicolas Parisot, Yvan Rahbé, Mélanie Ribeiro Lopes, Aida Ripoll-Cladellas, Stéphanie Robin, Céline Roques, Pascale Roux, Julio Rozas, Alejandro Sánchez-Gracia, Jose F. Sánchez-Herrero, Didac Santesmasses, Iris Scatoni, Rémy-Félix Serre, Ming Tang, Wenhua Tian, Paul A. Umina, Manuella van Munster, Carole Vincent-Monégat, Joshua Wemmer, Alex C. C. Wilson, Ying Zhang, Chaoyang Zhao, Jing Zhao, Serena Zhao, Xin Zhou, François Delmotte, Denis Tagu

Source: BMC Biology, Vol 18, Iss 1, Pp 1-25 (2020)

Subject Terms: Arthropod genomes, Daktulosphaira vitifoliae, Gene duplications, Host plant interactions, Effectors, Biological invasions, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12915-020-00820-5; https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/bc996b59e5fd405cb747afed645c9cef

Plant Metabolic Gene Clusters: Evolution, Organization, and Their Applications in Synthetic Biology

Authors: Revuru Bharadwaj, Sarma R. Kumar, Ashutosh Sharma, Ramalingam Sathishkumar

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: plant gene clusters, specialized metabolites, defensive functions, gene duplications, metabolic engineering, synthetic biology, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.697318/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/9f83fa8b1d994a28970f689a851e9f44

Evolution and Expression of the Immune System of a Facultatively Anadromous Salmonid

Authors: Thomas J. Colgan, Peter A. Moran, Louise C. Archer, Robert Wynne, Stephen A. Hutton, Philip McGinnity, Thomas E. Reed

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: facultatively anadromous, immunity, gene expression, gene duplications, sexual dimorphism, salmonids, Immunologic diseases. Allergy, RC581-607

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Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.568729/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/6780fd5ea68c4af8b619f7504e355896

Mitochondrial copper and phosphate transporter specificity was defined early in the evolution of eukaryotes

Authors: Xinyu Zhu, Aren Boulet, Katherine M Buckley, Casey B Phillips, Micah G Gammon, Laura E Oldfather, Stanley A Moore, Scot C Leary, Paul A Cobine

Source: eLife, Vol 10 (2021)

Subject Terms: mitochondrial carrier family, copper, phosphate, gene duplications, evolution, mitochondria, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/64690; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/d7782b206ce2471e920d657626b83899

PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity

Authors: Suzanne de Bruijn, Tao Zhao, Jose M. Muiño, Eric M. Schranz, Gerco C. Angenent, Kerstin Kaufmann

Source: BMC Plant Biology, Vol 18, Iss 1, Pp 1-18 (2018)

Subject Terms: PISTILLATA, Flower development, Gene duplications, Paralogs, MADS, Tarenaya, Botany, QK1-989

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12870-018-1574-0; https://doaj.org/toc/1471-2229

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Multiple Potential Germ-Line Helicases are Components of the Germ-Line-Specific P Granules of Caenorhabditis elegans

Authors: Gruidl, M. E., Smith, P. A., Kuznicki, K. A., McCrone, J. S., Kirchner, J., Roussell, D. L., Strome, S., Bennett, K. L.

Source: Proceedings of the National Academy of Sciences of the United States of America, 1996 Nov . 93(24), 13837-13842.

Access URL: https://www.jstor.org/stable/40988

Genome Sequencing and Transcriptome Analysis Reveal Recent Species-Specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata)

Authors: Jaume Pérez-Sánchez, Fernando Naya-Català, Beatriz Soriano, M. Carla Piazzon, Ahmed Hafez, Toni Gabaldón, Carlos Llorens, Ariadna Sitjà-Bobadilla, Josep A. Calduch-Giner

Source: Frontiers in Marine Science, Vol 6 (2019)

Subject Terms: gilthead sea bream, phylogenomics, gene duplications, transposon mobilization, immune response, response to stimulus, Science, General. Including nature conservation, geographical distribution, QH1-199.5

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Relation: https://www.frontiersin.org/article/10.3389/fmars.2019.00760/full; https://doaj.org/toc/2296-7745

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Consequences of CYP2D6 Copy-Number Variation for Pharmacogenomics in Psychiatry

Authors: Joseph P. Jarvis, Arul Prakasam Peter, Jeffrey A. Shaman

Source: Frontiers in Psychiatry, Vol 10 (2019)

Subject Terms: personalized medicine, precision medicine, gene deletion, gene duplications, pharmacogenomics, cytochrome P450 CYP2D6, Psychiatry, RC435-571

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Relation: https://www.frontiersin.org/article/10.3389/fpsyt.2019.00432/full; https://doaj.org/toc/1664-0640

Access URL: https://doaj.org/article/cf78d0174d074a3193870b6f0647e5db