The symbiotic origin of the eukaryotic cell

Authors: López-García, Purificación, Moreira, David

Source: Comptes Rendus Biologies, Vol 346, Iss G1, Pp 55-74 (2023)

Subject Terms: Eukaryogenesis, Symbiogenesis, Symbiosis, Syntrophy, Mitochondria, Nucleus, Asgard archaea, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://comptes-rendus.academie-sciences.fr/biologies/articles/10.5802/crbiol.118/; https://doaj.org/toc/1768-3238

Access URL: https://doaj.org/article/4362587ea3d742c8abd4a223edd2fd87

Characterization of protein glycosylation in an Asgard archaeon

Authors: Satoshi Nakagawa, Hiroyuki Imachi, Shigeru Shimamura, Saeko Yanaka, Hirokazu Yagi, Maho Yagi-Utsumi, Hiroyuki Sakai, Shingo Kato, Moriya Ohkuma, Koichi Kato, Ken Takai

Source: BBA Advances, Vol 6, Iss , Pp 100118- (2024)

Subject Terms: N-glycosylation, Asgard archaea, Glycoproteome, Eukaryogenesis, S-layer, Biochemistry, QD415-436, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667160324000061; https://doaj.org/toc/2667-1603

Access URL: https://doaj.org/article/9a8e4027d3ef42a599856ca6a754c27e

The expanding Asgard archaea invoke novel insights into Tree of Life and eukaryogenesis

Authors: Zhichao Zhou, Yang Liu, Karthik Anantharaman, Meng Li

Source: mLife, Vol 1, Iss 4, Pp 374-381 (2022)

Subject Terms: archaea, Carl Woese, eukaryogenesis, Tree of Life, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2770-100X

Access URL: https://doaj.org/article/163b4482b78e45b0bddb7f61635d54f3

Expanded Archaeal Genomes Shed New Light on the Evolution of Isoprenoid Biosynthesis

Authors: Pengfei Zhu, Jialin Hou, Yixuan Xiong, Ruize Xie, Yinzhao Wang, Fengping Wang

Source: Microorganisms, Vol 12, Iss 4, p 707 (2024)

Subject Terms: isoprenoids, mevalonate pathway, LUCA, Asgard archaea, eukaryogenesis, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/12/4/707; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/835b126f14dc476c84af5840ccdd2044

A Complex Endomembrane System in the Archaeon Ignicoccus hospitalis Tapped by Nanoarchaeum equitans

Contributors: Rachel, Reinhard [Univ. of Regensburg (Germany). Center for Electron Microscopy]

Source: Frontiers in Microbiology; 8

File Description: Medium: ED; Size: Article No. 1072

Access URL: http://www.osti.gov/scitech/servlets/purl/1364327

Endosymbiotic selective pressure at the origin of eukaryotic cell biology

Authors: Parth K Raval, Sriram G Garg, Sven B Gould

Source: eLife, Vol 11 (2022)

Subject Terms: endomembrane system, mitochondria, eukaryogenesis, FECA, LECA, endosymbiosis, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/81033; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/1dc34e3725b24e6480d6486d0f8fec0d

From Mimivirus to Mirusvirus: The Quest for Hidden Giants

Authors: Morgan Gaïa, Patrick Forterre

Source: Viruses, Vol 15, Iss 8, p 1758 (2023)

Subject Terms: giant viruses, Nucleocytoviricota, viral eukaryogenesis, evolution, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/15/8/1758; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/c9849c4f6617487382de9e6bb1d5eb97

Virus Bioinformatics

Authors: Robertson, David, Hufsky, Franziska, Ibrahim, Bashar, Marz, Manja

Subject Terms: QH301-705.5, Q1-390, BBB, recombination, software, APMV, AquaDiva, horizontal gene transfer, sequence interpretation, structurally homogenous, CVI988/Rispens, DFT, eukaryogenesis, fluorescent reporter protein, parallel reaction monitoring, transcriptomics, splicing, Rickettsia, minor capsid protein, flavivirus, DWT, RNA viruses, data compression, DNA replication, influenza A, virus diagnostics, quasispecies, mRNA structure, systems virology, virus bioinformatics, metagenomics, drug resistance, nasopharynx, image quantification, infection, primary B cells, non-coding RNA, transcriptome, RB1B, virus, interferon-stimulated genes (ISG), pandoravirus, virus-host interaction, secondary structure, bivalve, ICP0, assembly, MSA, variant calling, translation machinery, gram-positive bacteria, virosphere, viral mRNA, NCLDV, sncRNA, structurally related, cellular immunity, Amebae viruses, genome evolution, groundwater, capsid protein, HPV58, RNA structure, polyomavirus, Mimivirus, PAA, honey bees, Hepatitis C virus, compressive genomics, Yellow Fever Virus, poxvirus, ADAR, virome, endogenous viral elements, giant virus, structure database, RNA-seq, deep sequencing, viral evolution, bovine soft palate, deformed wing virus, virus-to-host gene transfer, ASFV, virus proteomics, RNAi, polycistronic viral transcripts, complex networks analysis, mimivirus, TLR agonist, time series, mRNA families, foot-and-mouth disease virus (FMDV), comparative genomics, virus dynamics modeling, viral metagenome, subVOG, bioinformatics, viral taxonomy, sequencing library preparation, virus classification, alignment, targeted proteomics, prophylaxis, bacteriophage, dsdna viruses, taxonomic classification, Marek’s disease virus (MDV), Coxsackievirus B4, hepatitis C virus, mass spectrometry, data transformation, Base-By-Base, data analysis, peptide selection, proteomics, mitochondria, Drosophila, ori, HMM, codon frequency distribution, RNAseq, protein domains, innate immune system, tobacco mosaic virus, apiary pests, virology, virus genomics, chemical organization theory, aquifer, Biology, life sciences

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/62248
https://mdpi.com/books/pdfview/book/2043

Evolution and diversification of the nuclear envelope

Authors: Norma E. Padilla-Mejia, Alexandr A. Makarov, Lael D. Barlow, Erin R. Butterfield, Mark C. Field

Source: Nucleus, Vol 12, Iss 1, Pp 21-41 (2021)

Subject Terms: nuclear envelope, heterochromatin, lamina, proteome, evolution, eukaryogenesis, Genetics, QH426-470, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/1949-1034; https://doaj.org/toc/1949-1042

Access URL: https://doaj.org/article/4a3870a6bf0c424cabaa72ea0254c73a

Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes

Contributors: Ettema, Thijs [Uppsala Univ., Uppsala (Sweden)]

Source: Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences; 370; 1678

File Description: Medium: ED; Size: Article No. 20140328

Access URL: http://www.osti.gov/scitech/servlets/purl/1343570

Archaeal Communities: The Microbial Phylogenomic Frontier

Authors: Nahui Olin Medina-Chávez, Michael Travisano

Source: Frontiers in Genetics, Vol 12 (2022)

Subject Terms: archaea, extremophiles, microbial-communities, eukaryogenesis, rare biosphere, metagenomics, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.693193/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/ae04ae00b9864dfc83e2b653e4768bbf

Division of labour in a matrix, rather than phagocytosis or endosymbiosis, as a route for the origin of eukaryotic cells

Authors: Andrew Bateman

Source: Biology Direct, Vol 15, Iss 1, Pp 1-33 (2020)

Subject Terms: Eukaryotes, Eukaryogenesis, Evolution, Prokaryotes, Hypothesis, Matrix, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13062-020-00260-9; https://doaj.org/toc/1745-6150

Access URL: https://doaj.org/article/1587de0ec7ba4c1db80b5adf8cef9f1b

Unde venisti PGRMC? Grand-Scale Biology from Early Eukaryotes and Eumetazoan Animal Origins

Authors: Michael A. Cahill

Source: Frontiers in Bioscience-Landmark, Vol 27, Iss 11, p 317 (2022)

Subject Terms: steroid biology, eukaryogenesis, membrane-associated progesterone receptor, neurogenesis, neurobiology, synapse, cyp51a1, candidate phyla radiation bacteria, heme, redox, metabolism, translational control, eumetazoa, eumetazoans, leumca, gastrulation, gastrulation organizer, blastoporal axial organizer, pluripotent stem cells, tmem97, sigma-2 receptor, cell motility, sleep, epigenetics, aging, aging clock, tyrosine phosphorylation, epithelial-mesenchymal transition, emt, Biochemistry, QD415-436, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.imrpress.com/journal/FBL/27/11/10.31083/j.fbl2711317; https://doaj.org/toc/2768-6701

Access URL: https://doaj.org/article/5145fbc18e6e4a12be1c8463c298ada9

Quo vadis PGRMC? Grand-Scale Biology in Human Health and Disease

Authors: Michael A. Cahill

Source: Frontiers in Bioscience-Landmark, Vol 27, Iss 11, p 318 (2022)

Subject Terms: steroid biology, eukaryogenesis, membrane-associated progesterone receptor, neurogenesis: neurobiology, synapse, cyp51a1, heme, redox, metabolism, translational control, eumetazoa, eumetazoans, leumca, gastrulation, gastrulation organizer, blastoporal axial organizer, pluripotent stem cells, tmem97, sigma-2 receptor, cell motility, sleep, epigenetics, aging, aging clock, tyrosine phosphorylation, epithelial-mesenchymal transition, emt, cancer, diabetes, intestinal microbiome, Biochemistry, QD415-436, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.imrpress.com/journal/FBL/27/11/10.31083/j.fbl2711318; https://doaj.org/toc/2768-6701

Access URL: https://doaj.org/article/27c9f15c2d7a49e384143d92c7adcec7

Medusavirus Ancestor in a Proto-Eukaryotic Cell: Updating the Hypothesis for the Viral Origin of the Nucleus

Authors: Masaharu Takemura

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: giant virus, medusavirus, viral eukaryogenesis, origin of the nucleus, evolution, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.571831/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/356e06c9558840f6a9444d1470147ddb

Eukaryotes Are a Holophyletic Group of Polyphyletic Origin

Authors: Josip Skejo, Damjan Franjević

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: Eukaryomorpha, archaea, alphaproteobacteria, eukaryogenesis, lichens, hybridization, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.01380/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/19e07f0360d741a88ccabb3ea243d8ce

Asgardarchaeota – A Novel Prokaryotic Group Discovered in Aquatic Sediments that Might Shed Light on the Origin and Early Evolution of Eukaryotes.

Authors: Paul-Adrian BULZU, Adorján CRISTEA, Doriana M. BUDA, Horia L. BANCIU

Source: Aerul şi Apa: Componente ale Mediului, Vol 2019, Pp 435-446 (2019)

Subject Terms: aquatic sediments, Asgardarchaeota, eukaryogenesis, eukaryote signature proteins, Meteorology. Climatology, QC851-999

File Description: electronic resource

Relation: http://aerapa.conference.ubbcluj.ro/2019/PDF/43_BULZU%20et%20al..%20435-446.pdf; https://doaj.org/toc/2067-743X

Access URL: https://doaj.org/article/b5dd2deac4554d108dfe9f2dbd4555b0

Coevolution of Eukaryote-like Vps4 and ESCRT-III Subunits in the Asgard Archaea

Authors: Zhongyi Lu, Ting Fu, Tianyi Li, Yang Liu, Siyu Zhang, Jinquan Li, Junbiao Dai, Eugene V. Koonin, Guohui Li, Huiying Chu, Meng Li

Source: mBio, Vol 11, Iss 3 (2020)

Subject Terms: endomembrane system, Asgard archaea, ESCRT, eukaryogenesis, evolution, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/628c1d9e344545ea91856bcedc5e2a22

Comparing Early Eukaryotic Integration of Mitochondria and Chloroplasts in the Light of Internal ROS Challenges: Timing is of the Essence

Authors: Dave Speijer, Michael Hammond, Julius Lukeš

Source: mBio, Vol 11, Iss 3 (2020)

Subject Terms: chloroplast, eukaryogenesis, mitochondria, reactive oxygen species, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/1c3edba505ec41fd97d19580f2236c98

What’s in a name? How organelles of endosymbiotic origin can be distinguished from endosymbionts

Authors: Ansgar Gruber

Source: Microbial Cell, Vol 6, Iss 2, Pp 123-133 (2019)

Subject Terms: organelle, evolution, endocytobiosis, symbiogenesis, chloroplast, eukaryogenesis, speciation, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://microbialcell.com/researcharticles/2019a-gruber-microbial-cell/; https://doaj.org/toc/2311-2638

Access URL: https://doaj.org/article/6c71557c44844f93a4694948d341efdb