Myxoid smooth muscle neoplasia of the uterus: comprehensive analysis by next-generation sequencing and nucleic acid hybridization

Authors: Yoon, Ju-Yoon, Mariño-Enriquez, Adrian, Stickle, Natalie, de Borja, Richard J., Ismiil, Nadia, Djordjevic, Bojana, Virtanen, Carl, Ravat, Aastha, Nucci, Marisa R., Mirkovic, Jelena, Parra-Herran, Carlos

Source: In Modern Pathology November 2019 32(11):1688-1697

Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors

Authors: Anderson, Nathaniel D., de Borja, Richard, Young, Matthew D., Fuligni, Fabio, Rosic, Andrej, Roberts, Nicola D., Hajjar, Simon, Layeghifard, Mehdi, Novokmet, Ana, Kowalski, Paul E., Anaka, Matthew, Davidson, Scott, Zarrei, Mehdi, Said, Badr Id, Schreiner, L. Christine, Marchand, Remi, Sitter, Joseph, Gokgoz, Nalan, Brunga, Ledia, Graham, Garrett T., Fullam, Anthony, Pillay, Nischalan, Toretsky, Jeffrey A., Yoshida, Akihiko, Shibata, Tatsuhiro, Metzler, Markus, Somers, Gino R., Scherer, Stephen W., Flanagan, Adrienne M., Campbell, Peter J., Schiffman, Joshua D., Shago, Mary, Alexandrov, Ludmil B., Wunder, Jay S., Andrulis, Irene L., Malkin, David, Behjati, Sam, Shlien, Adam

Source: Science, 2018 Aug . 361(6405), 891-891.

Access URL: https://www.jstor.org/stable/26505249

Comparative toxicoproteogenomics of mouse and rat liver identifies TCDD-resistance genes

Authors: Prokopec, Stephenie D., Lu, Aileen, Lee, Sandy Che-Eun S., Yao, Cindy Q., Sun, Ren X., Watson, John D., Soliymani, Rabah, de Borja, Richard, Wong, Ada, Sam, Michelle, Zuzarte, Philip, McPherson, John D., Okey, Allan B., Pohjanvirta, Raimo, Boutros, Paul C.

Source: Archives of toxicology. 93(10):2961-2978

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125619447.0x000001&indx=1&recIds=ETOCvdc_100125619447.0x000001

BPG: Seamless, automated and interactive visualization of scientific data

Authors: P'ng, Christine, Green, Jeffrey, Chong, Lauren, Waggott, Daryl, Prokopec, Stephenie, Shamsi, Mehrdad, Nguyen, Francis, Mak, Denise, Lam, Felix, Albuquerque, Marco, Wu, Ying, Jung, Esther, Starmans, Maud, Chan-Seng-Yue, Michelle, Yao, Cindy, Liang, Bianca, Lalonde, Emilie, Haider, Syed, Simone, Nicole, Sendorek, Dorota, Chu, Kenneth, Moon, Nathalie, Fox, Natalie, Grzadkowski, Michal, Harding, Nicholas, Fung, Clement, Murdoch, Amanda, Houlahan, Kathleen, Wang, Jianxin, Garcia, David, de Borja, Richard, Sun, Ren, Lin, Xihui, Chen, Gregory, Lu, Aileen, Shiah, Yu-Jia, Zia, Amin, Kearns, Ryan, Boutros, Paul

Source: BMC bioinformatics. 20(1):1-5

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185485117.0x000001&indx=1&recIds=ETOCvdc_100185485117.0x000001

Comprehensive Analysis of Hypermutation in Human Cancer

Authors: Campbell, Brittany B., Light, Nicholas, Fabrizio, David, Zatzman, Matthew, Fuligni, Fabio, de Borja, Richard, Davidson, Scott, Edwards, Melissa, Elvin, Julia A., Hodel, Karl P., Zahurancik, Walter J., Suo, Zucai, Lipman, Tatiana, Wimmer, Katharina, Kratz, Christian P., Bowers, Daniel C., Laetsch, Theodore W., Dunn, Gavin P., Johanns, Tanner M., Grimmer, Matthew R., Smirnov, Ivan V., Larouche, Valérie, Samuel, David, Bronsema, Annika, Osborn, Michael, Stearns, Duncan, Raman, Pichai, Cole, Kristina A., Storm, Phillip B., Yalon, Michal, Opocher, Enrico, Mason, Gary, Thomas, Gregory A., Sabel, Magnus, George, Ben, Ziegler, David S., Lindhorst, Scott, Issai, Vanan Magimairajan, Constantini, Shlomi, Toledano, Helen, Elhasid, Ronit, Farah, Roula, Dvir, Rina, Dirks, Peter, Huang, Annie, Galati, Melissa A., Chung, Jiil, Ramaswamy, Vijay, Irwin, Meredith S., Aronson, Melyssa, Durno, Carol, Taylor, Michael D., Rechavi, Gideon, Maris, John M., Bouffet, Eric, Hawkins, Cynthia, Costello, Joseph F., Meyn, M. Stephen, Pursell, Zachary F., Malkin, David, Tabori, Uri, Shlien, Adam

Source: In Cell 16 November 2017 171(5):1042-1056

Robust global microRNA expression profiling using next-generation sequencing technologies

Authors: Tam, Shirley, de Borja, Richard, Tsao, Ming-Sound, McPherson, John D

Source: In Laboratory Investigation March 2014 94(3):350-358

Coronavirus disease 2019 (COVID-19) outbreak on an in-patient medical unit associated with unrecognized exposures in common areas—Epidemiological and whole-genome sequencing investigation

Authors: Kain, Dylan C., Isabel, Sandra, Abdulnoor, Mariana, Boissinot, Karel, De Borja, Richard, Filkin, Amanda, Lam, Bernard, Li, Jason, Lungu, Ilinca, McCreight, Liz, McGeer, Allison, Mazzulli, Tony, Paterson, Aimee, Zuzarte, Philip, Vincelli, Felicia, Bergwerff, Cassandra, Fattouh, Ramzi, Simpson, Jared T., Johnstone, Jennie

Source: Infection Control & Hospital Epidemiology; November 2023, Vol. 44 Issue: 11 p1829-1833, 5p

Detection of the novel SARS-CoV-2 European lineage B.1.177 in Ontario, Canada

Authors: Guthrie, Jennifer L., Teatero, Sarah, Zittermann, Sandra, Chen, Yao, Sullivan, Ashleigh, Rilkoff, Heather, Joshi, Esha, Sivaraman, Karthikeyan, de Borja, Richard, Sundaravadanam, Yogi, Laszloffy, Michael, Heisler, Lawrence, Allen, Vanessa G., Simpson, Jared T., Fittipaldi, Nahuel

Source: In Journal of Clinical Virology Plus June 2021 1(1-2)

Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis.

Authors: Light, Nicholas, Layeghifard, Mehdi, Attery, Ayush, Subasri, Vallijah, Zatzman, Matthew, Anderson, Nathaniel D., Hatkar, Rupal, Blay, Sasha, Chen, David, Novokmet, Ana, Fuligni, Fabio, Tran, James, de Borja, Richard, Agarwal, Himanshi, Waldman, Larissa, Abegglen, Lisa M., Albertson, Daniel, Finlay, Jonathan L., Hansford, Jordan R., Behjati, Sam

Source: Nature Communications; 1/5/2023, Vol. 14 Issue 1, p1-12, 12p

Subject Terms: SOMATIC mutation, TUMOR diagnosis, GERM cells, HEREDITARY cancer syndromes, PI3K/AKT pathway, DNA copy number variations, NUCLEOTIDE sequencing, HETEROZYGOSITY

Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada.

Authors: Isabel, Sandra, Abdulnoor, Mariana, Boissinot, Karel, Isabel, Marc R., de Borja, Richard, Zuzarte, Philip C., Sjaarda, Calvin P., R. Barker, Kevin, Sheth, Prameet M., Matukas, Larissa M., Gubbay, Jonathan B., McGeer, Alisson J., Mubareka, Samira, Simpson, Jared T., Fattouh, Ramzi

Source: Scientific Reports; 6/27/2022, Vol. 12 Issue 1, p1-7, 7p

Subject Terms: SARS-CoV-2, MOLECULAR probes, CANADIAN provinces

Geographic Terms: CANADA

Impact of neoadjuvant chemotherapy on somatic mutation status in high-grade serous ovarian carcinoma.

Authors: Marchocki, Zibi, Tone, Alicia, Virtanen, Carl, de Borja, Richard, Clarke, Blaise, Brown, Theodore, May, Taymaa

Source: Journal of Ovarian Research; 5/2/2022, Vol. 15 Issue 1, p1-13, 13p

Subject Terms: SOMATIC mutation, NEOADJUVANT chemotherapy, BLOOD banks, CYTOREDUCTIVE surgery, CARCINOMA, CYTOCHROME P-450 CYP2D6

CanDIG: Federated network across Canada for multi-omic and health data discovery and analysis

Authors: Dursi, L. Jonathan, Bozoky, Zoltan, de Borja, Richard, Li, Haoyuan, Bujold, David, Lipski, Adam, Rashid, Shaikh Farhan, Sethi, Amanjeev, Memon, Neelam, Naidoo, Dashaylan, Coral-Sasso, Felipe, Wong, Matthew, Quirion, P-O, Lu, Zhibin, Agarwal, Samarth, Pavlov, Yuriy, Ponomarev, Andrew, Husic, Mia, Pace, Krista, Palmer, Samantha, Grover, Stephanie A., Hakgor, Sevan, Siu, Lillian L., Malkin, David, Virtanen, Carl, Pugh, Trevor J., Jacques, Pierre-Étienne, Joly, Yann, Jones, Steven J.M., Bourque, Guillaume, Brudno, Michael

Source: In Cell Genomics 10 November 2021 1(2)

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Cellular and Molecular Architecture of Hematopoietic Stem Cells and Progenitors in Genetic Models of Bone Marrow Failure

Authors: Heidemann, Stephanie C. ^*, Bursic, Brian ^*, Zandi, Sasan, Li, Hongbing ^*, Klaassen, Robert J, Abish, Sharon, Rayar, Meera ^*, Breakey, Vicky R., Moshiri, Houtan ^*, Dhanraj, Santhosh ^*, de Borja, Richard ^*, Shlien, Adam ^*, Dick, John E., Dror, Yigal, Abelson, Sagi ^*

Source: In Blood 13 November 2019 134 Supplement 1:1223-1223

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Explosive mutation accumulation triggered by heterozygous human Pol ε proofreading-deficiency is driven by suppression of mismatch repair.

Authors: Hodel, Karl P., de Borja, Richard, Henninger, Erin E., Campbell, Brittany B., Ungerleider, Nathan, Light, Nicholas, Tong Wu, LeCompte, Kimberly G., Goksenin, A. Yasemin, Bunnell, Bruce A., Tabori, Uri, Shlien, Adam, Pursell, Zachary F.

Source: eLife; 2018, p1-25, 25p

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