Genetic differentiation and historical dynamics of the endemic species Rheum pumilum on the Qinghai-Tibetan Plateau inferred from phylogeography implications

Authors: Shuliang Liu, Jianxin Gao, Bo Xiao, Wenjie Guo, Qiushi Yu, Ailan Wang, Weiwei Li

Source: BMC Plant Biology, Vol 25, Iss 1, Pp 1-17 (2025)

Subject Terms: Rheum pumilum, Phylogeography, cpDNA, The Qinghai-Tibetan Plateau, Ecological niche, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/332060c61b934d3582fc7e1e7cc9d545

Complete chloroplast genome sequence of Solanum mochiquense, one of the tuber-bearing potato relatives

Authors: Tae-Ho Park

Source: Mitochondrial DNA. Part B. Resources, Vol 9, Iss 11, Pp 1586-1591 (2024)

Subject Terms: cpDNA, Peruvian species, plastom genome, phylogenetic tree, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/0ce808e46ed24d3e8a6a211ba38510e3

The finding of black currants from sect. Eucoreosma (Grossulariaceae) in the central part of southern Primorsky Territory, Russia

Authors: L. A. Fedina, M. A. Polezhaeva, D. R. Iunusova, M. N. Koldaeva, A. Sh. Sabitov

Source: Труды по прикладной ботанике, генетике и селекции, Vol 185, Iss 3, Pp 210-223 (2024)

Subject Terms: morphology, rare species, floristic find, chorology, cpdna, ribes, ribes ussuriense, Biotechnology, TP248.13-248.65, Botany, QK1-989

File Description: electronic resource

Relation: https://elpub.vir.nw.ru/jour/article/view/2042; https://doaj.org/toc/2227-8834; https://doaj.org/toc/2619-0982

Access URL: https://doaj.org/article/9bcf01b7c173427ca405f9c6b2dc02f7

Assembly and comparative analysis of the complete mitochondrial and chloroplast genome of Cyperus stoloniferus (Cyperaceae), a coastal plant possessing saline-alkali tolerance

Authors: Xiaorong Miao, Wenwen Yang, Donghai Li, Aiqin Wang, Juanyun Li, Xu Deng, Longfei He, Junqi Niu

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-18 (2024)

Subject Terms: Cyperus stoloniferus, mtDNA, cpDNA, Comparative analysis, Systematic evolution, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/16b6e81f54a2432bbddfcc6e1762093f

Extraction and analysis of high-quality chloroplast DNA with reduced nuclear DNA for medicinal plants

Authors: Yifan Yu, Xinxin Wang, Renjun Qu, Zhen OuYang, Juan Guo, Yujun Zhao, Luqi Huang

Source: BMC Biotechnology, Vol 24, Iss 1, Pp 1-10 (2024)

Subject Terms: Erigeron breviscapus, Chloroplast isolation, cpDNA extraction, Modified high-salt low-pH method, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/1472-6750

Access URL: https://doaj.org/article/c152a6a82c28416091fc3f5dcb281e31

A novel in-situ-process technique constructs whole circular cpDNA library

Authors: Qiang Zhou, Xianlong Ding, Hongjie Wang, Zunaira Farooq, Liang Wang, Shouping Yang

Source: Plant Methods, Vol 20, Iss 1, Pp 1-15 (2024)

Subject Terms: In-situ-process, In-situ lysis, In-situ substitute/ligation, BAC library, Circular cpDNA, Chloroplast, Plant culture, SB1-1110, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1746-4811

Access URL: https://doaj.org/article/a2141a6e268746ca9d7cb55bfb9c2513

A taxonomic revision of the genus Angelica (Apiaceae) in Taiwan with a new species A. aliensis

Authors: Jenn-Che Wang, Hung-Hsin Chen, Tsai-Wen Hsu, Kuo-Hsiang Hung, Chi-Chun Huang

Source: Botanical Studies, Vol 65, Iss 1, Pp 1-18 (2024)

Subject Terms: Angelica, cpDNA, nrDNA, Taxonomic revision, Taiwan, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1999-3110

Access URL: https://doaj.org/article/bb96a6104ff3457d8afadaf25645ff37

The complete chloroplast genome sequence of Psittacanthus schiedeanus (Cham. & Schltdl.) G.Don. (Santalales: Loranthaceae), the first plastome of a mistletoe species in the Psittacantheae tribe

Authors: Saddan Morales-Saldaña, Emanuel Villafán, Antonio Acini Vásquez-Aguilar, Santiago Ramírez-Barahona, Enrique Ibarra-Laclette, Juan Francisco Ornelas

Source: Mitochondrial DNA. Part B. Resources, Vol 9, Iss 1, Pp 5-10 (2024)

Subject Terms: Psittacanthus, chloroplast genome (cpDNA), hemiparasitic plants, mistletoes, Loranthaceae, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/7e536b28693a4e9b88c3544e8f8db211

Biochemical and molecular identification of ten plum (Prunus salicina L.) cultivars in Egypt based on their physiological traits, chloroplast and mitochondrial DNA markers

Authors: Hasnaa. H. Al-Agwany, Eglal M. Said, Thoria R. Mohamed, Zinab A. Abdelgawad

Source: Journal of Scientific Research in Science, Vol 40, Iss 2, Pp 107-133 (2023)

Subject Terms: plum, fruit quality, genetic diversity, cpdna, mtdna., Mathematics, QA1-939, Botany, QK1-989, Zoology, QL1-991, Geology, QE1-996.5

File Description: electronic resource

Relation: https://jsrs.journals.ekb.eg/article_331818.html; https://doaj.org/toc/2356-8364; https://doaj.org/toc/2356-8372

Access URL: https://doaj.org/article/f01475c4b6b44ea8bbf0dc4f934bb95b

Three systems of molecular markers reveal genetic differences between varieties sabina and balkanensis in the Juniperus sabina L. range

Authors: Katarzyna A. Jadwiszczak, Małgorzata Mazur, Agnieszka Bona, Katarzyna Marcysiak, Adam Boratyński

Source: Annals of Forest Science, Vol 80, Iss 1, Pp 1-22 (2023)

Subject Terms: Climatic niche, cpDNA, Precipitation, SilicoDArT, SNP, Temperature, Forestry, SD1-669.5

File Description: electronic resource

Relation: https://doaj.org/toc/1297-966X

Access URL: https://doaj.org/article/65c1b5ef77a148eda4648118b0a1f28c

Genetic diversity and phylogenetic analyses of Turkish sweet corn (Zea mays var. saccharata) varieties using ISSR markers and chloroplast trnL-F IGS region

Authors: Ertugrul FILIZ, Mehmet Emin URAS, Nevin OZTURK, Huseyin GUNGOR, Ibrahim Ilker OZYIGIT

Source: Notulae Botanicae Horti Agrobotanici Cluj-Napoca, Vol 52, Iss 2 (2024)

Subject Terms: cpDNA, maize, molecular marker, molecular breeding, phylogeny, Forestry, SD1-669.5, Agriculture (General), S1-972

File Description: electronic resource

Relation: https://www.notulaebotanicae.ro/index.php/nbha/article/view/13551; https://doaj.org/toc/0255-965X; https://doaj.org/toc/1842-4309

Access URL: https://doaj.org/article/67bd7c69ead04477bc161d8fb511a807

Optimizing DNA Extraction and Selecting Suitable Regions for Biodiversity Assessment: A Study on Shorea leprosula

Authors: Henti Hendalastuti Rachmat, Kusumadewi Sri Yulita, Fifi Gus Dwiyanti, Arida Susilowati, Nawwall Arrofaha, Susila Susila, Irsyad Kamal, Iskandar Zulkarnaen Siregar

Source: Jurnal Manajemen Hutan Tropika, Vol 30, Iss 1 (2024)

Subject Terms: cpDNA, tropical tree, genetic variation, trnL-trnF, trnG, Forestry, SD1-669.5

File Description: electronic resource

Relation: https://jurnal.ipb.ac.id/index.php/jmht/article/view/50672; https://doaj.org/toc/2087-0469; https://doaj.org/toc/2089-2063

Access URL: https://doaj.org/article/8ea0eb39b4a94adcab23d9dde9fbe3cb

The complete chloroplast genome sequence and phylogenetic analysis of Heritiera fomes Buch.-Ham. (Malvales: Sterculiaceae)

Authors: Thippawan Yoocha, Wasitthee Kongkachana, Chutima Sonthirod, Chaiwat Naktang, Phakamas Phetchawang, Suchart Yamprasai, Sithichoke Tangphatsornruang, Wirulda Pootakham

Source: Mitochondrial DNA. Part B. Resources, Vol 8, Iss 9, Pp 932-935 (2023)

Subject Terms: heritiera fomes, malvaceae species, chloroplast genome (cpdna), Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/7f3c9c67c08e40b6ab93d7162ba22f05

Phylogeography and ecological niche modeling implicate multiple microrefugia of Swertia tetraptera during quaternary glaciations

Authors: Lucun Yang, Guoying Zhou

Source: BMC Plant Biology, Vol 23, Iss 1, Pp 1-16 (2023)

Subject Terms: cpDNA trnS-trnG, Swertia tetraptera, Haplotypes, Qinghai-Tibetan Plateau, Refugia, Phylogeographic structure, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/3e5ebe89ff2040bea3fa76142c0a3498

Phylogeographic Structure and Population Dynamics of Baoxing Osmanthus (Osmanthus serrulatus), an Endemic Species from the Southwest Sichuan Basin, China

Authors: Zhibei Wang, Xi Wu, Xin Liu, Min Zhang, Chunping Xie, Lin Chen

Source: Plants, Vol 13, Iss 12, p 1653 (2024)

Subject Terms: Osmanthus serrulatus, cpDNA, genetic structure, phylogeography, population dynamics, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/13/12/1653; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/6add3ff936f649928925297de91591db

Conservation Genetics for Management of Threatened Plant and Animal Species

Contributors: Ottewell, Kym, Byrne, Margaret

Subject Terms: small isolated population, Mediterranean native trout, morphological deformities, Camphorosmoideae, conservation genetics, disjunct distribution, population fragmentation, population structure, single nucleotide polymorphism (SNP) markers, genetic diversity, population viability analysis, allele retention, translocation, conservation management, threatened marsupial, remnant, conservation, natural hybridisation, Eucalyptus, high throughput sequencing, NGS, South Australia, golden bandicoot, southern brown bandicoot, quenda, phylogenetic, taxonomy, evolutionarily significant unit, ecosystem engineer, genetic rescue, genetic restoration, supplementation, disease, inbreeding, genetic swamping, locally unique alleles, population genetics, marsupial, adaptive potential, Leadbeater’s possum, Gymnobelideus leadbeateri, ex situ conservation, Psittacidae, Ara macao, Xcaret, captive breeding, climate drying, cpDNA, ecotype, Evolutionarily Significant Units, gene flow, geographic expansion, patchy abundance, phylogeography, Research and information: general, Biology, life sciences

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/87494
https://mdpi.com/books/pdfview/book/5692

Genetic and Phenotypic Variation in Tree Crops Biodiversity

Contributors: Distefano, Gaetano

Subject Terms: Camellia sinensis, genetic diversity, population structure, SSR, bark phenotype, bark scale, Norway spruce, resonance wood, sonic tomography, conifer adaptation, phenotypic plasticity, comparative proteomics, stress response, Hainan Province, endemic species, conservation, codon usage, sequence divergence, phylogeny, Acer, sect. Platanoidea, chloroplast genome, structural variation, phylogenetics, nSSR, cpDNA, Magnoliaceae, conservation genetics, fragmentation, agroforestry, domestication, Inga edulis, amazon forest, microsatellite markers, Paeonia rockii (flare tree peony) germplasm accessions, phenotypic traits, EST-SSR markers, chloroplast DNA sequences, tree improvement, evergreen oak, phenotypic selection, selection criteria, seed orchard, generalized value, genetic differentiation, natural regeneration, cultivated population, semi-domesticated population, growth trait, wood property, cytosine methylation, epimarker, candidate gene, gene expression, color mutation, pigment metabolism, chlorophyll, anthocyanin, mutation mechanism, RNA-seq, Castanopsis × kuchugouzhui, natural hybrid, molecular identification, chloroplast DNA sequence, microsatellite, Ilex species, Aquifoliaceae, morphological traits, DNA C-value, plastid genome, S-genotyping, S-locus, P. communis, P. pyrifolia, P. amygdaliformis, genetic structure, Research and information: general, Biology, life sciences, Microbiology (non-medical)

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/84548
https://mdpi.com/books/pdfview/book/5532

Insights into adaptive evolution of plastomes in Stipa L. (Poaceae)

Authors: Katarzyna Krawczyk, Kamil Myszczyński, Marcin Nobis, Jakub Sawicki

Source: BMC Plant Biology, Vol 22, Iss 1, Pp 1-16 (2022)

Subject Terms: cpDNA, Stipa, Poaceae, Positive selection, Adaptive pressure, Molecular evolution, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/42bdad71f8b94f05bcd7d152948778e7

The complete chloroplast genome of ‘biasong’ (Citrus micrantha Wester), a native species from the Southern Philippines

Authors: R. E. Madayag, R. Jr. P. Gentallan, K. J. O. Quiñones, M. C. B. Bartolome, J. R. A. Vera Cruz, T. H. Borromeo, L. E. Endonela, E. B. S. Timog

Source: Mitochondrial DNA. Part B. Resources, Vol 7, Iss 11, Pp 1992-1996 (2022)

Subject Terms: aurantioideae, cpdna, cultivated fruit tree, small-flowered papeda, plastome assembly, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/b91f63df1a3747f6a405e7d9fab59153

Chloroplast genome assembly of Serjania erecta Raldk: comparative analysis reveals gene number variation and selection in protein-coding plastid genes of Sapindaceae

Authors: Leonardo C. J. Corvalán, Mariane B. Sobreiro, Larissa R. Carvalho, Renata O. Dias, Ramilla S. Braga-Ferreira, Cintia P. Targueta, Carlos M. e Silva-Neto, Bianca W. Berton, Ana Maria S. Pereira, José A. F. Diniz-filho, Mariana P. C. Telles, Rhewter Nunes

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: cpDNA, molecular evolution, negative selection, organellar genome, plastome, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1258794/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/f9b0b929dbe14f299fc8fc6f0d664b1f