The chromosome-level genome provides insights into the adaptive evolution of the visual system in Oratosquilla oratoria

Authors: Daizhen Zhang, Xiaoli Sun, Lianfu Chen, Lianyu Lin, Chijie Yin, Wenqi Yang, Jun Liu, Qiuning Liu, Huabin Zhang, Senhao Jiang, Yongxin Li, Boping Tang, Gang Wang

Source: BMC Biology, Vol 23, Iss 1, Pp 1-15 (2025)

Subject Terms: Oratosquilla oratoria, Chromosome-level genome assembly, Opsins, Thick cornea, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/84519fa9bdd9496db355eed8dd228ea7

Genome assembly of an endemic butterfly (Minois aurata) shed light on the genetic mechanisms underlying ecological adaptation to arid valley habitat

Authors: Wenqian Hu, Yi Wang, Xiaoxiao Chen, Jialong Huang, Jingge Kuang, Lei Wang, Kangshan Mao, Liang Dou

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-14 (2024)

Subject Terms: Arid valley, Chromosome-level genome, Minois aurata, Adaptive evolution, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/9e55e6a8427c434ea25ccd23c19fa346

Comparative genomics of three non-hematophagous leeches (Whitmania spp.) with emphasis on antithrombotic biomolecules

Authors: Fang Zhao, Zuhao Huang, Lizhou Tang, Wenting Zhang, Zichao Liu, Gonghua Lin

Source: Frontiers in Genetics, Vol 16 (2025)

Subject Terms: Whitmania species, chromosome-level genome, antithrombotic gene, genetic variation, gene expression, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2025.1548006/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/518168214bb34c11ae4c1f88e49a68c3

Chromosomal-level genome assembly of Hylurgus ligniperda: insights into host adaptation and environmental tolerance

Authors: Zhiqian Chen, Lili Ren, Jiaxing Li, Ningning Fu, Quanzheng Yun, Youqing Luo

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-19 (2024)

Subject Terms: Chromosome-level genome, Environmental stress, CYP450, Histone, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/618ffe4ec91141809aabbae293632468

The somatic genome of Eptatretus okinoseanus reveals the adaptation to deep-sea oligotrophic environment

Authors: Mengke Shi, Qi Li, Yong Wang, Li-Sheng He

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-14 (2024)

Subject Terms: Hagfish, Chromosome-level genome, Environment adaptation, Olfactory receptors, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/4a5914c5e9fd41a18d02d62cb0d39de3

Genomic insights into bamboo witches’ broom disease: pathogenicity and phytohormone biosynthesis in Aciculosporium take

Authors: Yu Gu, Haoyue Yu, Jiayan Kuang, Xiaoping Ma, Muhammad Salman Tahir, Sainan He, Yingchong Liao

Source: Frontiers in Microbiology, Vol 15 (2024)

Subject Terms: bamboo witches’ broom disease, Aciculosporium take Miyake, chromosome level genome assembly, pathogenicity, comparative genomic, phytohormone biosynthesis, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1432979/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/88ed80386c00428fba8c261a7183c173

Chromosome-level dairy goat genome reveals the regulatory landscape of lactation

Authors: He, Qiuya ^{a, b}, Zhang, Fuhong ^a, Zhang, Xianglei ^b, Yao, Weiwei ^a, Wu, Jiao ^a, Niu, Huimin ^a, Wang, Yaling ^a, Luo, Jun ^{a, ⁎}

Source: In International Journal of Biological Macromolecules November 2024 280 Part 3

Genomics comparisons of three chromosome-level mudskipper genome assemblies reveal molecular clues for water-to-land evolution and adaptation

Authors: Chao Bian, Yu Huang, Ruihan Li, Pengwei Xu, Xinxin You, Yunyun Lv, Zhiqiang Ruan, Jieming Chen, Junmin Xu, Qiong Shi

Source: Journal of Advanced Research, Vol 58, Iss , Pp 93-104 (2024)

Subject Terms: Mudskipper, Whole genome sequencing, Chromosome-level genome assembly, Comparative genomics, Water-to-land evolution, Terrestrial adaptation, Medicine (General), R5-920, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2090123223001431; https://doaj.org/toc/2090-1232

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Chromosome-level genome assembly of Hippophae tibetana provides insights into high-altitude adaptation and flavonoid biosynthesis

Authors: Guoyun Zhang, Yating Song, Ning Chen, Jihua Wei, Jianguo Zhang, Caiyun He

Source: BMC Biology, Vol 22, Iss 1, Pp 1-15 (2024)

Subject Terms: Hippophae tibetana, Chromosome-level genome, Adaptation, Flavonoid biosynthesis, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/c0feb9932d334020b76dbdefaa116ed0

Identification and characterization of structural variants related to meat quality in pigs using chromosome-level genome assemblies

Authors: Daehong Kwon, Nayoung Park, Suyeon Wy, Daehwan Lee, Woncheoul Park, Han-Ha Chai, In-Cheol Cho, Jongin Lee, Kisang Kwon, Heesun Kim, Youngbeen Moon, Juyeon Kim, Jaebum Kim

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-10 (2024)

Subject Terms: Meat quality, Structural variation, Nanchukmacdon, Chromosome-level genome assembly, Multi-omics analysis, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/0ea30d29dffd41d29af7ec965d0f4286

Chromosome-level genome assembly provides insights into the genome evolution and functional importance of the phenylpropanoid–flavonoid pathway in Thymus mongolicus

Authors: Zhenhua Dang, Ying Xu, Xin Zhang, Wentao Mi, Yuan Chi, Yunyun Tian, Yaling Liu, Weibo Ren

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-19 (2024)

Subject Terms: Thymus mongolicus, Chromosome-level genome, Whole-genome duplication, Genome evolution, Phenylpropanoid–flavonoid biosynthesis, Transcriptome and metabolome, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/cfb153106c434e20b2468c1aee7b0fc2

Chromosome-level genome assembly of Oncomelania hupensis: the intermediate snail host of Schistosoma japonicum

Authors: Qin Liu, Lei Duan, Yun-Hai Guo, Li-Min Yang, Yi Zhang, Shi-Zhu Li, Shan Lv, Wei Hu, Nan-Sheng Chen, Xiao-Nong Zhou

Source: Infectious Diseases of Poverty, Vol 13, Iss 1, Pp 1-11 (2024)

Subject Terms: Schistosomiasis, Schistosoma japonicum, Oncomelania hupensis, Chromosome-level genome, Infectious and parasitic diseases, RC109-216, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/2049-9957

Access URL: https://doaj.org/article/d2ca82e497674739a0ad7549e5e97613

Chromosome-Scale Genome of the Fern Cibotium barometz Unveils a Genetic Resource of Medicinal Value

Authors: Guole Qin, Denglang Pan, Ying Long, Huiying Lan, Delong Guan, Jing Song

Source: Horticulturae, Vol 10, Iss 11, p 1191 (2024)

Subject Terms: chromosome-level genome assembly, fern genomics, Cibotium barometz, medicinal plant genomics, bioactive compound biosynthesis, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.mdpi.com/2311-7524/10/11/1191; https://doaj.org/toc/2311-7524

Access URL: https://doaj.org/article/1e795a9f8ed54369b75d3309c338b2ad

The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary profiles

Authors: Axel Touchard, Valentine Barassé, Jean-Michel Malgouyre, Michel Treilhou, Christophe Klopp, Elsa Bonnafé

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-19 (2024)

Subject Terms: Tetramorium bicarinatum, Toxins, Peptides, Venom, Ants, Chromosome-level genome, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/88f43f2758e74930b80bf529c2d52dce

Chromosome-level genome provides insight into the evolution and conservation of the threatened goral (Naemorhedus goral)

Authors: Nan Sun, Xiao-Ying Ma, Guang-Hong Shi, Xiao-Hong Yang, Wei Li, Chen-Guang Feng, Da Mi, Guo-Gang Li, Ji-Qi Lu

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-11 (2024)

Subject Terms: Chromosome-level genome, De novo assembly, Goral, Phylogenetics, Conservation, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/366abbb1ff9648fab745a9ff39508cd4

The updated weeping forsythia genome reveals the genomic basis for the evolution and the forsythin and forsythoside A biosynthesis

Authors: Yong Li, Fan Wang, Nancai Pei, Qian Li, Hongli Liu, Wangjun Yuan, Hechen Zhang

Source: Horticultural Plant Journal, Vol 9, Iss 6, Pp 1149-1161 (2023)

Subject Terms: Forsythia suspensa, Chromosome-level genome, Comparative genomics, Forsythoside A, Forsythin, Whole-genome duplication, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S246801412200108X; https://doaj.org/toc/2468-0141

Access URL: https://doaj.org/article/54afb59d6cc64d7196982f8c625a0eef

Genomes of the cosmopolitan fruit pest Bactrocera dorsalis (Diptera: Tephritidae) reveal its global invasion history and thermal adaptation

Authors: Yue Zhang, Shanlin Liu, Marc De Meyer, Zuxing Liao, Yan Zhao, Massimiliano Virgilio, Shiqian Feng, Yujia Qin, Sandeep Singh, Suk Ling Wee, Fan Jiang, Shaokun Guo, Hu Li, Pablo Deschepper, Sam Vanbergen, Hélène Delatte, Alies van Sauers-Muller, Tati Suryati Syamsudin, Anastasia Priscilla Kawi, Muo Kasina, Kemo Badji, Fazal Said, Lijun Liu, Zihua Zhao, Zhihong Li

Source: Journal of Advanced Research, Vol 53, Iss , Pp 61-74 (2023)

Subject Terms: Bactrocera dorsalis, Chromosome-level genome assembly, Invasion routes and history, Resequencing, Species delimitation, Thermal adaptation, Medicine (General), R5-920, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2090123222002910; https://doaj.org/toc/2090-1232

Access URL: https://doaj.org/article/f903476655be4929bf5eac0f8e9c157e

Chromosome-level genome assembly of the deep-sea snail Phymorhynchus buccinoides provides insights into the adaptation to the cold seep habitat

Authors: Zhaoqun Liu, Yuting Huang, Hao Chen, Chang Liu, Minxiao Wang, Chao Bian, Lingling Wang, Linsheng Song

Source: BMC Genomics, Vol 24, Iss 1, Pp 1-16 (2023)

Subject Terms: Cold seep, Phymorhynchus buccinoides, Chromosome-level genome, Glutamate regulation, Olfactory/chemosensory, H2S detoxification, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/2d85517c915b45739e8ea5b7dc13f4d6

Chromosome-level Dinobdella ferox genome provided a molecular model for its specific parasitism

Authors: Jiang-Wei Gao, Jian-Wei Sun, Xiang-Rong Tong, Hao Wang, Qing-Mei Hu, Yan-Ru Cao, Zhan-Han Zhou, Zi-Chao Liu

Source: Parasites & Vectors, Vol 16, Iss 1, Pp 1-14 (2023)

Subject Terms: Leech, Dinobdella ferox, Chromosome-level genome, Parasitism modeling, Interspecific molecular interaction, Parasitology, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1756-3305

Access URL: https://doaj.org/article/3e7aa048ce554ce4995374510cffccf6

Population genomic analysis provides evidence of the past success and future potential of South China tiger captive conservation

Authors: Chen Wang, Dong-Dong Wu, Yao-Hua Yuan, Meng-Cheng Yao, Jian-Lin Han, Ya-Jiang Wu, Fen Shan, Wan-Ping Li, Jun-Qiong Zhai, Mian Huang, Shi-Ming Peng, Qin-Hui Cai, Jian-Yi Yu, Qun-Xiu Liu, Zhao-Yang Liu, Lin-Xiang Li, Ming-Sheng Teng, Wei Huang, Jun-Ying Zhou, Chi Zhang, Wu Chen, Xiao-Long Tu

Source: BMC Biology, Vol 21, Iss 1, Pp 1-16 (2023)

Subject Terms: South China tiger, Chromosome-level genome, Whole genome sequencing, Genomic inbreeding, Deleterious mutations, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/7d8d9377067a4078a8645333520fcc1e