EnsembleDL-ATG: Identifying autophagy proteins by integrating their sequence and evolutionary information using an ensemble deep learning framework

Authors: Lezheng Yu, Yonglin Zhang, Li Xue, Fengjuan Liu, Runyu Jing, Jiesi Luo

Source: Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 4836-4848 (2023)

Subject Terms: Autophagy protein, Ensemble deep learning, Position-specific scoring matrix, AutoBioSeqpy, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037023003471; https://doaj.org/toc/2001-0370

Access URL: https://doaj.org/article/95268131af7c42ccabd835f5ac0d46e0

Evaluation and development of deep neural networks for RNA 5-Methyluridine classifications using autoBioSeqpy

Authors: Lezheng Yu, Yonglin Zhang, Li Xue, Fengjuan Liu, Runyu Jing, Jiesi Luo

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: RNA 5-methyluridine, deep learning, autoBioSeqpy, UMAP, SHAP, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1175925/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/f4259417139148eab9743d2d66870551