Admixture as a source for HLA variation in Neolithic European farming communities

Authors: Nicolas Antonio da Silva, Onur Özer, Magdalena Haller-Caskie, Yan-Rong Chen, Daniel Kolbe, Sabine Schade-Lindig, Joachim Wahl, Carola Berszin, Michael Francken, Irina Görner, Kerstin Schierhold, Joachim Pechtl, Gisela Grupe, Christoph Rinne, Johannes Müller, Tobias L. Lenz, Almut Nebel, Ben Krause-Kyora

Source: Genome Biology, Vol 26, Iss 1, Pp 1-23 (2025)

Subject Terms: Ancient DNA, European Neolithic, Population genetics, Admixture, Immune genes, HLA diversity, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/4bab6548a9f8462d931b008b230b5d7f

PCR test to determine whether the destroyed remains of carbonized seeds belong to the genus Hordeum L.

Authors: T. V. Semilet, L. Yu. Shipilina, E. K. Khlestkina, N. A. Shvachko

Source: Биотехнология и селекция растений, Vol 7, Iss 4, Pp 105-113 (2025)

Subject Terms: elf3, hordeum, usvyaty, ancient dna, paleogenetics, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://biosel.elpub.ru/jour/article/view/251; https://doaj.org/toc/2658-6266; https://doaj.org/toc/2658-6258

Access URL: https://doaj.org/article/fe0a3df3f8344d8b9250225a402f04a3

The cranium from the Octagon in Ephesos

Authors: Gerhard W. Weber, Petra G. Šimková, Daniel M. Fernandes, Olivia Cheronet, Előd Úry, Harald Wilfing, Katarina Matiasek, Alejandro Llano-Lizcano, Pere Gelabert, Immo Trinks, Katerina Douka, Sabine Ladstätter, Tom Higham, Martin Steskal, Ron Pinhasi

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-16 (2025)

Subject Terms: Arsinoë IV, Ptolemean, Ephesos, Cranial morphology, Ancient DNA, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/4a29f7f1469a421f971aa2446cfdc642

Resolving the source of branch length variation in the Y chromosome phylogeny

Authors: Yaniv Swiel, Janet Kelso, Stéphane Peyrégne

Source: Genome Biology, Vol 26, Iss 1, Pp 1-19 (2025)

Subject Terms: Reference bias, Ancient DNA, Y chromosome, Sequence alignment, Molecular dating, Mutation rate, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/bd05e46cff124d9582b9a7a6d9c9ac58

Pre-processing of paleogenomes: mitigating reference bias and postmortem damage in ancient genome data

Authors: Dilek Koptekin, Etka Yapar, Kıvılcım Başak Vural, Ekin Sağlıcan, N. Ezgi Altınışık, Anna-Sapfo Malaspinas, Can Alkan, Mehmet Somel

Source: Genome Biology, Vol 26, Iss 1, Pp 1-23 (2025)

Subject Terms: Ancient DNA, Reference bias, Graph-reference genome, Post-mortem damage, Masking, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/8cede3d9c7034bb6b65af3eaeda1a6ac

Unraveling the ancient fungal DNA from the Iceman gut

Authors: Nikolay Oskolkov, Anna Sandionigi, Anders Götherström, Fabiana Canini, Benedetta Turchetti, Laura Zucconi, Tanja Mimmo, Pietro Buzzini, Luigimaria Borruso

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-11 (2024)

Subject Terms: Fungi, Ancient DNA (aDNA), Pseudogymnoascus, Iceman, Ancient metagenomics, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/eed4b25186e34bd8a7da67d367ce3e56

Between Volga and Ural River basins: concerning family ties of the Abashevo and Sintashta population of the Bronze Age in the context of genetic dat

Authors: Mednikova M.B., Kanapin A.A., Samsonova A.A., Morgunova N.L.

Source: Вестник археологии, антропологии и этнографии, Iss 4(67), Pp 184-198 (2024)

Subject Terms: the bronze age, ancient dna, ngs, whole genome sequencing, bioinformatics, Archaeology, CC1-960

File Description: electronic resource

Relation: http://ipdn.ru/_private/a67/184-198.pdf; https://doaj.org/toc/1811-7465; https://doaj.org/toc/2071-0437

Access URL: https://doaj.org/article/e877818e70864ff781f523d7704a3155

The genomic portrait of the Picene culture provides new insights into the Italic Iron Age and the legacy of the Roman Empire in Central Italy

Authors: Francesco Ravasini, Helja Kabral, Anu Solnik, Luciana de Gennaro, Francesco Montinaro, Ruoyun Hui, Chiara Delpino, Stefano Finocchi, Pierluigi Giroldini, Oscar Mei, Michael Allen Beck De Lotto, Elisabetta Cilli, Mogge Hajiesmaeil, Letizia Pistacchia, Flavia Risi, Chiara Giacometti, Christiana Lyn Scheib, Kristiina Tambets, Mait Metspalu, Fulvio Cruciani, Eugenia D’Atanasio, Beniamino Trombetta

Source: Genome Biology, Vol 25, Iss 1, Pp 1-27 (2024)

Subject Terms: Picenes, Iron Age, Ancient Italy, Archaeogenomics, Adriatic cultures, Ancient DNA, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/c2093ac2e5a8457eb7017902b33a58d4

Ancient genomes from the Tang Dynasty capital reveal the genetic legacy of trans-Eurasian communication at the eastern end of Silk Road

Authors: Minglei Lv, Hao Ma, Rui Wang, Hui Li, Xiangyu Zhang, Wenbo Zhang, Yuding Zeng, Ziwei Qin, Hongbo Zhai, Yiqiang Lou, Yukai Lin, Le Tao, Haifeng He, Xiaomin Yang, Kongyang Zhu, Yawei Zhou, Chuan-Chao Wang

Source: BMC Biology, Vol 22, Iss 1, Pp 1-11 (2024)

Subject Terms: Ancient Chang’an, East Asia, Ancient DNA, Tang Dynasty, Silk Road, Population history, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/e834f40dddef498e890828ffb5ad9bcc

Improved detection of methylation in ancient DNA

Authors: Susanna Sawyer, Pere Gelabert, Benjamin Yakir, Alejandro Llanos-Lizcano, Alessandra Sperduti, Luca Bondioli, Olivia Cheronet, Christine Neugebauer-Maresch, Maria Teschler-Nicola, Mario Novak, Ildikó Pap, Ildikó Szikossy, Tamás Hajdu, Vyacheslav Moiseyev, Andrey Gromov, Gunita Zariņa, Eran Meshorer, Liran Carmel, Ron Pinhasi

Source: Genome Biology, Vol 25, Iss 1, Pp 1-23 (2024)

Subject Terms: Paleogenomics, Methylation, Ancient DNA, Bisulfite treatment, Enzymatic methylation treatment, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/02bbf141ab6b403e817691f1389c919c

Heterochronous mitogenomes shed light on the Holocene history of the Scandinavian brown bear

Authors: Isabelle Sofie Feinauer, Edana Lord, Johanna von Seth, Georgios Xenikoudakis, Erik Ersmark, Love Dalén, Ioana-Nicoleta Meleg

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-11 (2024)

Subject Terms: Brown bear, Mitogenomes, Ancient DNA, Scandinavia, Postglacial recolonisation, Bottleneck, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/4320411290cf41ddabc7a9a18ab9d84b

Restoration of the spike architectonics in ancient barley excavated at the twelfth-century settlement of Usvyaty

Authors: T. V. Semilet, N. V. Smirnova, N. A. Shvachko, O. N. Kovaleva, E. K. Khlestkina

Source: Труды по прикладной ботанике, генетике и селекции, Vol 185, Iss 3, Pp 199-209 (2024)

Subject Terms: ancient dna, btr1, btr2, vrs, hordeum vulgare l., Biotechnology, TP248.13-248.65, Botany, QK1-989

File Description: electronic resource

Relation: https://elpub.vir.nw.ru/jour/article/view/2041; https://doaj.org/toc/2227-8834; https://doaj.org/toc/2619-0982

Access URL: https://doaj.org/article/31be2b63c0924b63b1f5bfca8d7cf4a9

Functional annotation of eukaryotic genes from sedimentary ancient DNA

Authors: Uğur Çabuk, Ulrike Herzschuh, Lars Harms, Barbara von Hippel, Kathleen R. Stoof-Leichsenring

Source: Frontiers in Ecology and Evolution, Vol 13 (2025)

Subject Terms: eukaryotes, functional genes, paleoecosystem, paleo metagenomics, sedimentary ancient DNA (sedaDNA), Evolution, QH359-425, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fevo.2025.1459690/full; https://doaj.org/toc/2296-701X

Access URL: https://doaj.org/article/5e5d8253f51e4234a20fcafbff35908e

Integrating paleoparasitological, paleogenetic, and archaeological data to understand the paleoecological scenario of pre-Columbian archaeological site Gruta do Gentio II, Brazil

Authors: Ludmila Gurjão, Lorrayne Brito, Ondemar Dias, Jandira Neto, Alena Mayo Iñiguez

Source: Frontiers in Microbiology, Vol 15 (2025)

Subject Terms: ancient DNA, coprolites, DNA barcoding, paleogenetic, paleoparasitology, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1505059/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/9f3926672668495b88b989bfadbb3cce

Late Pleistocene polar bear genomes reveal the timing of allele fixation in key genes associated with Arctic adaptation

Authors: Yulin Sun, Eline D. Lorenzen, Michael V. Westbury

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-7 (2024)

Subject Terms: Adaptation, Ancient DNA, Arctic, Genomics, Polar bear, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/456e8dc539f14b199ea9f98ed053c923

Phylogeography of the woolly mammoth (Mammuthus primigenius) in the Minusinsk Depression of southern Siberia in the Late Pleistocene

Authors: S. A. Modina, M. A. Kusliy, D. G. Malikov, A. S. Molodtseva

Source: Вавиловский журнал генетики и селекции, Vol 28, Iss 5, Pp 571-577 (2024)

Subject Terms: ancient dna, woolly mammoth, phylogeography, mitochondrial genome, southern siberia, Genetics, QH426-470

File Description: electronic resource

Relation: https://vavilov.elpub.ru/jour/article/view/4239; https://doaj.org/toc/2500-3259

Access URL: https://doaj.org/article/466c9e43d91f4eaaad2717284ddad28d

DNA polymorphism in loci associated with the adaptation of barley to environmental conditions, when comparing seed samples from archaeological excavations of the 12th century with the VIR collection accessions of different geographical origin

Authors: T. V. Semilet, N. A. Shvachko, O. N. Kovaleva, L. Yu. Shipilina, E. K. Khlestkina

Source: Биотехнология и селекция растений, Vol 7, Iss 2, Pp 67-74 (2024)

Subject Terms: snp, biological collection, chi gene, elf3 gene, ancient dna, selection, paleobotany, paleogenetics, sequencing, barley, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://biosel.elpub.ru/jour/article/view/233; https://doaj.org/toc/2658-6266; https://doaj.org/toc/2658-6258

Access URL: https://doaj.org/article/c890bf3aaee544c88aeb4a496015d35e

READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

Authors: Erkin Alaçamlı, Thijessen Naidoo, Merve N. Güler, Ekin Sağlıcan, Şevval Aktürk, Igor Mapelli, Kıvılcım Başak Vural, Mehmet Somel, Helena Malmström, Torsten Günther

Source: Genome Biology, Vol 25, Iss 1, Pp 1-20 (2024)

Subject Terms: Ancient DNA, Relatedness, Kinship, Archaeogenomics, Software, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/a79f787384dd48a1a32572e6da074c99

A novel integrated extraction protocol for multi-omic studies in heavily degraded samples

Authors: Byron Boggi, Jack D. A. Sharpen, George Taylor, Konstantina Drosou

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-11 (2024)

Subject Terms: Degraded DNA, Ancient DNA (aDNA), Integrated extraction protocol, Multi-omic protocol, Evolutionary biology, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/3c99835c6fa14c7eabcf400df2dc4238

Critical Perspectives on Ancient DNA

Contributors: Strand, Daniel, Källén, Anna, Mulcare, Charlotte

Subject Terms: Ancient DNA, aDNA, genetics, paleogenetics, paleogenomics, archaogenomics, archaeology, anthropology, history, popular media, identity, politics, population, ethnicity, Anthropology, Genetic engineering, Archaeological science, methodology and techniques

File Description: image/jpeg

Relation: The MIT Press

Access URL: https://directory.doabooks.org/handle/20.500.12854/146758