Single-cell delineation of the microbiota-gut-brain axis: Probiotic intervention in Chd8 haploinsufficient mice

Authors: Ji, Peifeng ^{1, 4}, Wang, Ning ^{1, 2, 4}, Yu, You ^{1, 4}, Zhu, Junjie ^{1, 3}, Zuo, Zhenqiang ¹, Zhang, Bing ¹, Zhao, Fangqing ^{1, 2, 3, 5, ∗}

Source: In Cell Genomics 12 February 2025 5(2)

High-resolution spatially resolved proteomics of complex tissues based on microfluidics and transfer learning

Authors: Hu, Beiyu ^{1, 2, 6}, He, Ruiqiao ^{1, 3, 6}, Pang, Kun ^{1, 3, 6}, Wang, Guibin ^{4, 6}, Wang, Ning ^{1, 3}, Zhu, Wenzhuo ¹, Sui, Xin ⁵, Teng, Huajing ⁵, Liu, Tianxin ¹, Zhu, Junjie ^{1, 2}, Jiang, Zewen ¹, Zhang, Jinyang ¹, Zuo, Zhenqiang ¹, Wang, Weihu ⁵, Ji, Peifeng ^{1, ∗}, Zhao, Fangqing ^{1, 2, 3, 7, ∗∗}

Source: In Cell 6 February 2025 188(3):734-748

Spatiotemporal patterns of the pregnancy microbiome and links to reproductive disorders

Authors: Xiao, Liwen, Zhou, Tian, Zuo, Zhenqiang, Sun, Ningxia, Zhao, Fangqing

Source: In Science Bulletin 15 May 2024 69(9):1275-1285

Gut microbiota-targeted interventions: from conventional approaches to genetic engineering

Authors: Zuo, Zhenqiang, Zhao, Fangqing

Source: In Science Bulletin 30 June 2023 68(12):1231-1234

Gut microbiota dysbiosis associated with different types of demyelinating optic neuritis in patients

Authors: Liu, Yi, Fan, Huimin, Shao, Yonghui, Zhang, Jing, Zuo, Zhenqiang, Wang, Jinfeng, Zhao, Fangqing, Jiang, Libin

Source: In Multiple Sclerosis and Related Disorders April 2023 72

Maternal and neonatal viromes indicate the risk of offspring's gastrointestinal tract exposure to pathogenic viruses of vaginal origin during delivery

Authors: Wang, Jinfeng, Xiao, Liwen, Xiao, Baichuan, Zhang, Bing, Zuo, Zhenqiang, Ji, Peifeng, Zheng, Jiayong, Li, Xiaoqing, Zhao, Fangqing

Source: MLife. 1(3):303-310

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182088302.0x000001&indx=1&recIds=ETOCvdc_100182088302.0x000001

Highly integrated adaptive mechanisms in Spiribacter halalkaliphilus, a bacterium abundant in Chinese soda‐saline lakes

Authors: Xue, Qiong, Zhao, Dahe, Zhang, Shengjie, Zhou, Heng, Zuo, Zhenqiang, Zhou, Jian, Li, Ming, Xiang, Hua

Source: Environmental microbiology. 23(11):6463-6482

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100135314320.0x000001&indx=1&recIds=ETOCvdc_100135314320.0x000001

Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake

Authors: Zuo, Zhenqiang, Zhao, Dahe, Zhou, Jian, Han, Jing, Xiang, Hua

Source: Antonie van Leeuwenhoek. 114(1):83-94

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193224247.0x000001&indx=1&recIds=ETOCvdc_100193224247.0x000001

Real-time and programmable transcriptome sequencing with PROFIT-seq

Authors: Zhang, Jinyang, Hou, Lingling, Ma, Lianjun, Cai, Zhengyi, Ye, Shujun, Liu, Yang, Ji, Peifeng, Zuo, Zhenqiang, Zhao, Fangqing

Source: Nature Cell Biology; December 2024, Vol. 26 Issue: 12 p2183-2194, 12p

MAMI: a comprehensive database of mother–infant microbiome and probiotic resources.

Authors: Zhou, Tian, Xiao, Liwen, Zuo, Zhenqiang, Zhao, Fangqing

Source: Nucleic Acids Research; 1/5/2024, Vol. 52 Issue D1, pD738-D746, 9p

An upp-based markerless gene replacement method for genome reduction and metabolic pathway engineering in Pseudomonas mendocina NK-01 and Pseudomonas putida KT2440

Authors: Wang, Yuanyuan, Zhang, Chi, Gong, Ting, Zuo, Zhenqiang, Zhao, Fengjie, Fan, Xu, Yang, Chao, Song, Cunjiang

Source: In Journal of Microbiological Methods June 2015 113:27-33

PandaGUT provides new insights into bacterial diversity, function, and resistome landscapes with implications for conservation.

Authors: Huang, Guangping, Shi, Wenyu, Wang, Le, Qu, Qingyue, Zuo, Zhenqiang, Wang, Jinfeng, Zhao, Fangqing, Wei, Fuwen

Source: Microbiome; 10/7/2023, Vol. 11 Issue 1, p1-15, 15p

Subject Terms: BIOLOGICAL evolution, WILDLIFE conservation, RARE mammals, METAGENOMICS, GIANT panda, GUT microbiome, BACTERIAL diversity, MICROBIAL diversity

A novel peptide protects against diet-induced obesity by suppressing appetite and modulating the gut microbiota

Authors: Li, Zhanzhan, Zhang, Bing, Wang, Ning, Zuo, Zhenqiang, Wei, Hong, Zhao, Fangqing

Source: Gut; 2023, Vol. 72 Issue: 4 p686-698, 13p

Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8^+/− mouse model of ASD-like behavior.

Authors: Yu, You, Zhang, Bing, Ji, Peifeng, Zuo, Zhenqiang, Huang, Yongxi, Wang, Ning, Liu, Chang, Liu, Shuang-Jiang, Zhao, Fangqing

Source: Nature Communications; 3/3/2022, Vol. 13 Issue 1, p1-15, 15p

Subject Terms: LABORATORY mice, AMINO acid transport, AMINO acids, ANIMAL disease models, GLUTAMINE, DNA helicases, GUT microbiome, MICROBIAL metabolites

Multi-omics reveals the positive leverage of plant secondary metabolites on the gut microbiota in a non-model mammal.

Authors: Wang, Le, Huang, Guangping, Hou, Rong, Qi, Dunwu, Wu, Qi, Nie, Yonggang, Zuo, Zhenqiang, Ma, Rui, Zhou, Wenliang, Ma, Yingjie, Hu, Yibo, Yang, Zhisong, Yan, Li, Wei, Fuwen

Source: Microbiome; 9/21/2021, Vol. 9 Issue 1, p1-15, 15p

Subject Terms: PLANT metabolites, METABOLITES, GUT microbiome, FLAVONOIDS, GIANT panda, MICROBIAL virulence

Optimising PHBV biopolymer production in haloarchaea via CRISPRi-mediated redirection of carbon flux.

Authors: Lin, Lin, Chen, Junyu, Mitra, Ruchira, Gao, Quanxiu, Cheng, Feiyue, Xu, Tong, Zuo, Zhenqiang, Xiang, Hua, Han, Jing

Source: Communications Biology; 8/25/2021, Vol. 4 Issue 1, p1-13, 13p

Subject Terms: HALOBACTERIUM, BIOPOLYMERS, CRISPRS, FERMENTATION, GENE expression

Natronorubrum halalkaliphilum sp. nov., a haloalkaliphilic archaeon isolated from soda lake in Inner Mongolia Autonomous Region, China.

Authors: Xue, Qiong, Zhao, Dahe, Zuo, Zhenqiang, Zhou, Jian, Xiang, Hua

Source: Archives of Microbiology; Jul2021, Vol. 203 Issue 5, p2335-2342, 8p

Subject Terms: GENOME size, PHENOTYPES, NUCLEOTIDE sequencing, CARBONATED beverages, LAKES

Geographic Terms: INNER Mongolia (China)

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Microbiome in Female Reproductive Health: Implications for Fertility and Assisted Reproductive Technologies

Authors: Xiao, Liwen, Zuo, Zhenqiang, Zhao, Fangqing

Source: Genomics, Proteomics and Bioinformatics; February 2024, Vol. 22 Issue: 1

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