Analysis and benchmarking of small and large genomic variants across tandem repeats.

Authors: English, Adam C., Dolzhenko, Egor, Ziaei Jam, Helyaneh, McKenzie, Sean K., Olson, Nathan D., De Coster, Wouter, Park, Jonghun, Gu, Bida, Wagner, Justin, Eberle, Michael A., Gymrek, Melissa, Chaisson, Mark J. P., Zook, Justin M., Sedlazeck, Fritz J.

Source: Nature Biotechnology; Mar2025, Vol. 43 Issue 3, p431-442, 12p

LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads.

Authors: Ziaei Jam, Helyaneh, Zook, Justin M., Javadzadeh, Sara, Park, Jonghun, Sehgal, Aarushi, Gymrek, Melissa

Source: Genome Biology; 7/4/2027, Vol. 25 Issue 1, p1-12, 12p

A deep population reference panel of tandem repeat variation.

Authors: Ziaei Jam, Helyaneh, Li, Yang, DeVito, Ross, Mousavi, Nima, Ma, Nichole, Lujumba, Ibra, Adam, Yagoub, Maksimov, Mikhail, Huang, Bonnie, Dolzhenko, Egor, Qiu, Yunjiang, Kakembo, Fredrick Elishama, Joseph, Habi, Onyido, Blessing, Adeyemi, Jumoke, Bakhtiari, Mehrdad, Park, Jonghun, Javadzadeh, Sara, Jjingo, Daudi, Adebiyi, Ezekiel

Source: Nature Communications; 10/23/2023, Vol. 14 Issue 1, p1-15, 15p

Subject Terms: TANDEM repeats, HUMAN genetic variation, SINGLE nucleotide polymorphisms, SHORT tandem repeat analysis, HUMAN genome, WHOLE genome sequencing, HETEROZYGOSITY