Technical Report of HelixFold3 for Biomolecular Structure Prediction

Authors: Liu, Lihang, Zhang, Shanzhuo, Xue, Yang, Ye, Xianbin, Zhu, Kunrui, Li, Yuxin, Liu, Yang, Gao, Jie, Zhao, Wenlai, Yu, Hongkun, Wu, Zhihua, Zhang, Xiaonan, Fang, Xiaomin

Subject Terms: Quantitative Biology - Biomolecules, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2408.16975

Pre-Training on Large-Scale Generated Docking Conformations with HelixDock to Unlock the Potential of Protein-ligand Structure Prediction Models

Authors: Liu, Lihang, Zhang, Shanzhuo, He, Donglong, Ye, Xianbin, Zhou, Jingbo, Zhang, Xiaonan, Jiang, Yaoyao, Diao, Weiming, Yin, Hang, Chai, Hua, Wang, Fan, He, Jingzhou, Zheng, Liang, Li, Yonghui, Fang, Xiaomin

Subject Terms: Computer Science - Machine Learning, Computer Science - Computational Engineering, Finance, and Science, Quantitative Biology - Biomolecules

Access URL: http://arxiv.org/abs/2310.13913

Multimodal Graph Learning for Deepfake Detection

Authors: Yan, Zhiyuan, Sun, Peng, Lang, Yubo, Du, Shuo, Zhang, Shanzhuo, Wang, Wei, Liu, Lei

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2209.05419

GEM-2: Next Generation Molecular Property Prediction Network by Modeling Full-range Many-body Interactions

Authors: Liu, Lihang, He, Donglong, Fang, Xiaomin, Zhang, Shanzhuo, Wang, Fan, He, Jingzhou, Wu, Hua

Subject Terms: Computer Science - Machine Learning, Physics - Chemical Physics, Quantitative Biology - Molecular Networks, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2208.05863

HelixADMET: a robust and endpoint extensible ADMET system incorporating self-supervised knowledge transfer

Authors: Zhang, Shanzhuo, Yan, Zhiyuan, Huang, Yueyang, Liu, Lihang, He, Donglong, Wang, Wei, Fang, Xiaomin, Zhang, Xiaonan, Wang, Fan, Wu, Hua, Wang, Haifeng

Source: Bioinformatics, 2022

Subject Terms: Quantitative Biology - Biomolecules, Computer Science - Artificial Intelligence, Computer Science - Machine Learning, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2205.08055

Arrhythmogenic Mechanism of the Enhanced Late Sodium Current in Human Ventricular Myocytes - a Simulation Study

Authors: Wang, Wei, Zhang, Shanzhuo, Xu, Yong, Wang, Kuanquan, Zhang, Henggui

Source: 2019 Computing in Cardiology (CinC) Computing in Cardiology (CinC), 2019. :Page 1-Page 4 Sep, 2019

Relation: 2019 Computing in Cardiology (CinC)

New Mathematical Models for the Mouse Atrial Fast Sodium Channel

Authors: Zhang, Shanzhuo, Wang, Wei, Wang, Kuanquan, Zhang, Henggui

Source: 2019 Computing in Cardiology (CinC) Computing in Cardiology (CinC), 2019. :Page 1-Page 4 Sep, 2019

Relation: 2019 Computing in Cardiology (CinC)

LiteGEM: Lite Geometry Enhanced Molecular Representation Learning for Quantum Property Prediction

Authors: Zhang, Shanzhuo, Liu, Lihang, Gao, Sheng, He, Donglong, Fang, Xiaomin, Li, Weibin, Huang, Zhengjie, Su, Weiyue, Wang, Wenjin

Subject Terms: Physics - Chemical Physics, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2106.14494

ChemRL-GEM: Geometry Enhanced Molecular Representation Learning for Property Prediction

Authors: Fang, Xiaomin, Liu, Lihang, Lei, Jieqiong, He, Donglong, Zhang, Shanzhuo, Zhou, Jingbo, Wang, Fan, Wu, Hua, Wang, Haifeng

Source: Nature Machine Intelligence, 2022

Subject Terms: Computer Science - Machine Learning, Physics - Chemical Physics, Quantitative Biology - Molecular Networks

Access URL: http://arxiv.org/abs/2106.06130

Development of a novel Markov chain model for oxidative-dependent CaMKIIδ activation

Authors: Zhang, Shanzhuo, Li, Qince, Zhou, Lufang, Wang, Kuanquan, Zhang, Henggui

Source: 2015 Computing in Cardiology Conference (CinC) Computing in Cardiology Conference (CinC), 2015. :881-884 Sep, 2015

Relation: 2015 Computing in Cardiology Conference (CinC)

A novel two-dimensional ECG feature extraction and classification algorithm based on convolution neural network for human authentication

Authors: Hammad, Mohamed, Zhang, Shanzhuo, Wang, Kuanquan

Source: In Future Generation Computer Systems December 2019 101:180-196

Alternans in Mouse Atrial Cardiomyocytes: A Computational Study on the Influence of Cell-Cell Coupling and β-Adrenergic Stimulation

Authors: Zhang, Shanzhuo, Wang, Wei, Wang, Kuanquan, Shen, Weijian, Zhang, Henggui

Source: IEEE access. 8:84806-84820

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100102797771.0x000001&indx=1&recIds=ETOCvdc_100102797771.0x000001

Improving Whole-Heart CT Image Segmentation by Attention Mechanism

Authors: Wang, Wei, Ye, Chengqin, Zhang, Shanzhuo, Xu, Yong, Wang, Kuanquan

Source: IEEE access. 8:14579-14587

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100101780412.0x000001&indx=1&recIds=ETOCvdc_100101780412.0x000001

Multi-Depth Fusion Network for Whole-Heart CT Image Segmentation

Authors: Ye, Chengqin, Wang, Wei, Zhang, Shanzhuo, Wang, Kuanquan

Source: IEEE access. 7:23421-23429

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100077245623.0x000001&indx=1&recIds=ETOCvdc_100077245623.0x000001

Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking

Authors: Linscheid, Nora, Logantha, Sunil, Poulsen, Pi, Zhang, Shanzhuo, Schrölkamp, Maren, Egerod, Kristoffer, Thompson, Jonatan, Kitmitto, Ashraf, Galli, Gina, Humphries, Martin, Zhang, Henggui, Pers, Tune, Olsen, Jesper, Boyett, Mark, Lundby, Alicia

Source: Nature communications. 10(1):1-19

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182784726.0x000001&indx=1&recIds=ETOCvdc_100182784726.0x000001

An efficient and fast GPU-based algorithm for visualizing large volume of 4D data from virtual heart simulations

Authors: Yu, Shui, Zhang, Shanzhuo, Wang, Kuanquan, Xia, Yong, Zhang, Henggui

Source: In Biomedical Signal Processing and Control May 2017 35:8-18

Mechanistic insight into spontaneous transition from cellular alternans to arrhythmia—A simulation study.

Authors: Wang, Wei¹, Zhang, Shanzhuo², Ni, Haibo¹, Garratt, Clifford J.³, Boyett, Mark R.³, Hancox, Jules C.^1,4, Zhang, Henggui^1,2,5,6 henggui.zhang@manchester.ac.uk

Source: PLoS Computational Biology. 11/30/2018, Vol. 14 Issue 11, p1-27. 27p. 8 Graphs.

Subject Terms: *ARRHYTHMIA, *BIOLOGICAL tags, *HEART diseases, *LABORATORY rabbits, *SUDDEN death

Geometry-enhanced molecular representation learning for property prediction.

Authors: Fang, Xiaomin, Liu, Lihang, Lei, Jieqiong, He, Donglong, Zhang, Shanzhuo, Zhou, Jingbo, Wang, Fan, Wu, Hua, Wang, Haifeng

Source: Nature Machine Intelligence; Feb2022, Vol. 4 Issue 2, p127-134, 8p

The Role of CaMKII Overexpression and Oxidation in Atrial Fibrillation—A Simulation Study.

Authors: Wang, Wei, Shen, Weijian, Zhang, Shanzhuo, Luo, Gongning, Wang, Kuanquan, Xu, Yong, Zhang, Henggui

Source: Frontiers in Physiology; 12/18/2020, Vol. 11, pN.PAG-N.PAG, 17p

Subject Terms: ATRIAL fibrillation, REACTIVE oxygen species, RYANODINE receptors, OXIDATION, SARCOPLASMIC reticulum

A Mathematical Model of the Mouse Atrial Myocyte With Inter-Atrial Electrophysiological Heterogeneity.

Authors: Zhang, Henggui, Zhang, Shanzhuo, Wang, Wei, Wang, Kuanquan, Shen, Weijian

Source: Frontiers in Physiology; 8/6/2020, Vol. 11, pN.PAG-N.PAG, 23p

Subject Terms: ELECTROPHYSIOLOGY, MATHEMATICAL models, ION channels, MICE, MARKOV processes