Including frameworks of public health ethics in computational modelling of infectious disease interventions

Authors: Zarebski, Alexander E., Tellioglu, Nefel, Stockdale, Jessica E., Spencer, Julie A., KhudaBukhsh, Wasiur R., Miller, Joel C., Zachreson, Cameron

Subject Terms: Physics - Physics and Society, Computer Science - Computers and Society, Quantitative Biology - Populations and Evolution

Access URL: http://arxiv.org/abs/2502.00071

Investigation of P. Vivax Elimination via Mass Drug Administration

Authors: Anwar, Md Nurul, McCaw, James M., Zarebski, Alexander E., Hickson, Roslyn I., Flegg, Jennifer A.

Source: Epidemics Volume 48 , September 2024, 100789

Subject Terms: Quantitative Biology - Populations and Evolution

Access URL: http://arxiv.org/abs/2405.20619

A hybrid framework for compartmental models enabling simulation-based inference

Authors: Germano, Domenic P. J., Zarebski, Alexander E., Hautphenne, Sophie, Moss, Robert, Flegg, Jennifer A., Flegg, Mark B.

Subject Terms: Quantitative Biology - Populations and Evolution, Mathematics - Dynamical Systems

Access URL: http://arxiv.org/abs/2405.13239

Epidemiological waves - Types, drivers and modulators in the COVID-19 pandemic

Authors: Harvey, John ^{a, b, 1, ∗}, Chan, Bryan ^{c, 1}, Srivastava, Tarun ^{d, 1}, Zarebski, Alexander E. ^e, Dłotko, Paweł ^f, Błaszczyk, Piotr ^{g, h}, Parkinson, Rachel H. ^e, White, Lisa J. ⁱ, Aguas, Ricardo ^j, Mahdi, Adam ^k

Source: In Heliyon May 2023 9(5)

Development of an influenza pandemic decision support tool linking situational analytics to national response policy

Authors: Shearer, Freya M. ^*, Moss, Robert, Price, David J., Zarebski, Alexander E., Ballard, Peter G., McVernon, Jodie, Ross, Joshua V., McCaw, James M.

Source: In Epidemics September 2021 36

Influencing public health policy with data-informed mathematical models of infectious diseases: Recent developments and new challenges

Authors: Alahmadi, Amani, Belet, Sarah, Black, Andrew, Cromer, Deborah, Flegg, Jennifer A. ^∗, House, Thomas ^∗∗, Jayasundara, Pavithra, Keith, Jonathan M., McCaw, James M. ^∗, Moss, Robert, Ross, Joshua V. ^∗∗∗, Shearer, Freya M., Tun, Sai Thein Than, Walker, Camelia R., White, Lisa, Whyte, Jason M., Yan, Ada W.C., Zarebski, Alexander E.

Source: In Epidemics September 2020 32

Efferocytosis perpetuates substance accumulation inside macrophage populations

Authors: Ford, Hugh Z., Zeboudj, Lynda, Purvis, Gareth S. D., Bokum, Annemieke ten, Zarebski, Alexander E., Bull, Joshua A., Byrne, Helen M., Myerscough, Mary R., Greaves, David R.

Source: Proceedings: Biological Sciences, 2019 Jun 01. 286(1904), 1-9.

Access URL: https://www.jstor.org/stable/26743078

Model selection for seasonal influenza forecasting

Authors: Zarebski, Alexander E., Dawson, Peter, McCaw, James M., Moss, Robert

Source: In Infectious Disease Modelling February 2017 2(1):56-70

Epidemiological data from the COVID-19 outbreak, real-time case information

Authors: Xu, Bo, Gutierrez, Bernardo, Mekaru, Sumiko, Sewalk, Kara, Goodwin, Lauren, Loskill, Alyssa, Cohn, Emily L., Hswen, Yulin, Hill, Sarah C., Cobo, Maria M., Zarebski, Alexander E., Li, Sabrina, Wu, Chieh-Hsi, Hulland, Erin, Morgan, Julia D., Wang, Lin, O'Brien, Katelynn, Scarpino, Samuel V., Brownstein, John S., Pybus, Oliver G., Pigott, David M., Kraemer, Moritz U. G.

Source: Scientific data. 7(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174802920.0x000001&indx=1&recIds=ETOCvdc_100174802920.0x000001

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1.

Authors: Tsui, Joseph L.-H.¹, lok.tsui@new.ox.ac.uk, McCrone, John T.^2,3, Lambert, Ben⁴, Bajaj, Sumali¹, Inward, Rhys P. D.¹, Bosetti, Paolo⁵, Evans Pena, Rosario¹, Tegally, Houriiyah^6,7, Hill, Verity^2,8, Zarebski, Alexander E.¹, Peacock, Thomas P.^9,10, Luyang Liu¹¹, Neo Wu¹¹, Davis, Megan¹², Bogoch, Isaac I.¹³, Khan, Kamran^12,13, Kall, Meaghan¹⁰, Abdul Aziz, Nurin Iwani Binti¹⁰, Colquhoun, Rachel², O’Toole, Áine²

Source: Science; 7/21/2023, Vol. 381 Issue 6655, p336-343, 8p, 4 Diagrams

Context-specific emergence and growth of the SARS-CoV-2 Delta variant.

Authors: McCrone, John T., Hill, Verity, Bajaj, Sumali, Pena, Rosario Evans, Lambert, Ben C., Inward, Rhys, Bhatt, Samir, Volz, Erik, Ruis, Christopher, Dellicour, Simon, Baele, Guy, Zarebski, Alexander E., Sadilek, Adam, Wu, Neo, Schneider, Aaron, Ji, Xiang, Raghwani, Jayna, Jackson, Ben, Colquhoun, Rachel, O'Toole, Áine

Source: Nature; Oct2022, Vol. 610 Issue 7930, p154-160, 7p

Investigation of P. vivax elimination via mass drug administration: A simulation study.

Authors: Anwar, Md Nurul, McCaw, James M., Zarebski, Alexander E., Hickson, Roslyn I., Flegg, Jennifer A.

Source: Epidemics; Sep2024, Vol. 48, pN.PAG-N.PAG, 1p

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Authors: Viana, Raquel, Moyo, Sikhulile, Amoako, Daniel G., Tegally, Houriiyah, Scheepers, Cathrine, Althaus, Christian L., Anyaneji, Ugochukwu J., Bester, Phillip A., Boni, Maciej F., Chand, Mohammed, Choga, Wonderful T., Colquhoun, Rachel, Davids, Michaela, Deforche, Koen, Doolabh, Deelan, du Plessis, Louis, Engelbrecht, Susan, Everatt, Josie, Giandhari, Jennifer, Giovanetti, Marta, Hardie, Diana, Hill, Verity, Hsiao, Nei-Yuan, Iranzadeh, Arash, Ismail, Arshad, Joseph, Charity, Joseph, Rageema, Koopile, Legodile, Kosakovsky Pond, Sergei L., Kraemer, Moritz U. G., Kuate-Lere, Lesego, Laguda-Akingba, Oluwakemi, Lesetedi-Mafoko, Onalethatha, Lessells, Richard J., Lockman, Shahin, Lucaci, Alexander G., Maharaj, Arisha, Mahlangu, Boitshoko, Maponga, Tongai, Mahlakwane, Kamela, Makatini, Zinhle, Marais, Gert, Maruapula, Dorcas, Masupu, Kereng, Matshaba, Mogomotsi, Mayaphi, Simnikiwe, Mbhele, Nokuzola, Mbulawa, Mpaphi B., Mendes, Adriano, Mlisana, Koleka, Mnguni, Anele, Mohale, Thabo, Moir, Monika, Moruisi, Kgomotso, Mosepele, Mosepele, Motsatsi, Gerald, Motswaledi, Modisa S., Mphoyakgosi, Thongbotho, Msomi, Nokukhanya, Mwangi, Peter N., Naidoo, Yeshnee, Ntuli, Noxolo, Nyaga, Martin, Olubayo, Lucier, Pillay, Sureshnee, Radibe, Botshelo, Ramphal, Yajna, Ramphal, Upasana, San, James E., Scott, Lesley, Shapiro, Roger, Singh, Lavanya, Smith-Lawrence, Pamela, Stevens, Wendy, Strydom, Amy, Subramoney, Kathleen, Tebeila, Naume, Tshiabuila, Derek, Tsui, Joseph, van Wyk, Stephanie, Weaver, Steven, Wibmer, Constantinos K., Wilkinson, Eduan, Wolter, Nicole, Zarebski, Alexander E., Zuze, Boitumelo, Goedhals, Dominique, Preiser, Wolfgang, Treurnicht, Florette, Venter, Marietje, Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal, Glass, Allison, Martin, Darren P., Rambaut, Andrew, Gaseitsiwe, Simani, von Gottberg, Anne, de Oliveira, Tulio

Source: Nature; March 2022, Vol. 603 Issue: 7902 p679-686, 8p

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.

Authors: Plessis, Louis du, McCrone, John T., Zarebski, Alexander E., Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R., Faria, Nuno R., Jackson, Ben, Loman, Nicholas J., O’Toole, Áine, Nicholls, Samuel M., Parag, Kris V., Scher, Emily, Vasylyeva, Tetyana I., Volz, Erik M., Watts, Alexander

Source: Science; 2/12/2021, Vol. 371 Issue 6530, p708-712, 5p, 1 Diagram, 4 Graphs

Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil.

Authors: de Souza, William Marciel, Buss, Lewis Fletcher, Candido, Darlan da Silva, Carrera, Jean-Paul, Li, Sabrina, Zarebski, Alexander E., Pereira, Rafael Henrique Moraes, Prete, Carlos A., de Souza-Santos, Andreza Aruska, Parag, Kris V., Belotti, Maria Carolina T. D., Vincenti-Gonzalez, Maria F., Messina, Janey, da Silva Sales, Flavia Cristina, Andrade, Pamela dos Santos, Nascimento, Vítor Heloiz, Ghilardi, Fabio, Abade, Leandro, Gutierrez, Bernardo, Kraemer, Moritz U. G.

Source: Nature Human Behaviour; Aug2020, Vol. 4 Issue 8, p856-865, 10p

Crowding and the shape of COVID-19 epidemics

Authors: Rader, Benjamin, Scarpino, Samuel V., Nande, Anjalika, Hill, Alison L., Adlam, Ben, Reiner, Robert C., Pigott, David M., Gutierrez, Bernardo, Zarebski, Alexander E., Shrestha, Munik, Brownstein, John S., Castro, Marcia C., Dye, Christopher, Tian, Huaiyu, Pybus, Oliver G., Kraemer, Moritz U. G.

Source: Nature Medicine; December 2020, Vol. 26 Issue: 12 p1829-1834, 6p

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