Dissecting the mystery of embryonic scaling: The Scalers Hypothesis and its confirmation in sea urchin embryos

Authors: Timoshina, Polina S., Nesterenko, Alexey M., Parshina, Elena A., Orlov, Eugeny E., Eroshkin, Fedor M., Zaraisky, Andrey G.

Source: In Cells & Development October 2024

Cytoskeletal protein Zyxin in embryonic development: from controlling cell movements and pluripotency to regulating embryonic patterning

Authors: Martynova, Natalia Y., Parshina, Elena A., Zaraisky, Andrey G.

Source: FEBS journal. 290(1):66-72

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100170249079.0x000001&indx=1&recIds=ETOCvdc_100170249079.0x000001

Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos

Authors: Orlov, Eugeny E., Nesterenko, Alexey M., Korotkova, Daria D., Parshina, Elena A., Martynova, Natalia Yu., Zaraisky, Andrey G.

Source: In Developmental Cell 10 January 2022 57(1):95-111

Loss of the ability to regenerate body appendages in vertebrates: from side effects of evolutionary innovations to gene loss.

Authors: Zaraisky, Andrey G.^1,2 (AUTHOR) azaraisky@yahoo.com, Araslanova, Karina R.¹ (AUTHOR), Shitikov, Alexander D.¹ (AUTHOR), Tereshina, Maria B.^1,2 (AUTHOR)

Source: Biological Reviews. Oct2024, Vol. 99 Issue 5, p1868-1888. 21p.

Subject Terms: *BUD development, *RESIDUAL limbs, *GENE enhancers, *REGENERATION (Biology)

The expression of FoxG1 in the early development of the European river lamprey Lampetra fluviatilis demonstrates significant heterochrony with that in other vertebrates

Authors: Ermakova, Galina V., Kucheryavyy, Alexandr V., Zaraisky, Andrey G., Bayramov, Andrey V.

Source: In Gene Expression Patterns December 2019 34

Bioinformatics Screening of Genes Specific for Well-Regenerating Vertebrates Reveals c-answer, a Regulator of Brain Development and Regeneration

Authors: Korotkova, Daria D., Lyubetsky, Vassily A., Ivanova, Anastasia S., Rubanov, Lev I., Seliverstov, Alexander V., Zverkov, Oleg A., Martynova, Natalia Yu., Nesterenko, Alexey M., Tereshina, Maria B., Peshkin, Leonid, Zaraisky, Andrey G.

Source: In Cell Reports 22 October 2019 29(4):1027-1040

Genetically encodable bioluminescent system from fungi

Authors: Kotlobay, Alexey A., Sarkisyan, Karen S., Mokrushina, Yuliana A., Marcet-Houben, Marina, Serebrovskaya, Ekaterina O., Markina, Nadezhda M., Somermeyer, Louisa Gonzalez, Gorokhovatsky, Andrey Y., Vvedensky, Andrey, Purtov, Konstantin V., Petushkov, Valentin N., Rodionova, Natalja S., Chepurnyh, Tatiana V., Fakhranurova, Liliia I., Guglya, Elena B., Ziganshin, Rustam, Tsarkova, Aleksandra S., Kaskova, Zinaida M., Shender, Victoria, Abakumov, Maxim, Abakumova, Tatiana O., Povolotskaya, Inna S., Eroshkin, Fedor M., Zaraisky, Andrey G., Mishin, Alexander S., Dolgov, Sergey V., Mitiouchkina, Tatiana Y., Kopantzev, Eugene P., Waldenmaier, Hans E., Oliveira, Anderson G., Oba, Yuichi, Barsova, Ekaterina, Bogdanova, Ekaterina A., Gabaldón, Toni, Stevani, Cassius V., Lukyanov, Sergey, Smirnov, Ivan V., Gitelson, Josef I., Kondrashov, Fyodor A., Yampolsky, Ilia V.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Dec 01. 115(50), 12728-12732.

Access URL: https://www.jstor.org/stable/26580150

Paired fins in vertebrate evolution and ontogeny.

Authors: Bayramov, Andrey V., Yastrebov, Sergey A., Mednikov, Dmitry N., Araslanova, Karina R., Ermakova, Galina V., Zaraisky, Andrey G.

Source: Evolution & Development; May2024, Vol. 26 Issue 3, p1-22, 22p

Subject Terms: BRANCHIAL arch, ECOLOGICAL niche, VERTEBRATES, RESEARCH personnel, ONTOGENY, FISH locomotion

HMG-box factor SoxD/Sox15 and homeodomain-containing factor Xanf1/Hesx1 directly interact and regulate the expression of Xanf1/Hesx1 during early forebrain development in Xenopus laevis

Authors: Martynova, Natalia Y., Eroshkin, Fedor M., Оrlov, Eugeny E., Zaraisky, Andrey G.

Source: Gene. 638:52-59

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100062026001.0x000001&indx=1&recIds=ETOCvdc_100062026001.0x000001

Loss of noggin1, a classic embryonic inducer gene, in elasmobranchs.

Authors: Ermakova, Galina V., Meyntser, Irina V., Zaraisky, Andrey G., Bayramov, Andrey V.

Source: Scientific Reports; 2/15/2024, Vol. 14 Issue 1, p1-13, 13p

Subject Terms: CHONDRICHTHYES, MESODERM, NEURAL crest, TISSUE differentiation, WNT signal transduction, CELL differentiation, SHARKS

The Molecular Mechanism of Body Axis Induction in Lampreys May Differ from That in Amphibians.

Authors: Ermakova, Galina V., Kucheryavyy, Aleksandr V., Zaraisky, Andrey G., Bayramov, Andrey V.

Source: International Journal of Molecular Sciences; Feb2024, Vol. 25 Issue 4, p2412, 12p

Subject Terms: WNT/BETA-catenin pathway, LAMPREYS, XENOPUS laevis, AMPHIBIANS

Three foxg1 paralogues in lampreys and gnathostomes—brothers or cousins?

Authors: Ermakova, Galina V., Kucheryavyy, Alexander V., Mugue, Nikolay S., Mischenko, Aleksandr V., Zaraisky, Andrey G., Bayramov, Andrey V.

Source: Frontiers in Cell & Developmental Biology; 2024, p1-15, 15p

Subject Terms: LAMPREYS, SENSE organs, GENOMICS, COUSINS, BROTHERS

Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues.

Authors: Eroshkin, Fedor M., Fefelova, Elena A., Bredov, Denis V., Orlov, Eugeny E., Kolyupanova, Nataliya M., Mazur, Alexander M., Sokolov, Alexey S., Zhigalova, Nadezhda A., Prokhortchouk, Egor B., Nesterenko, Alexey M., Zaraisky, Andrey G.

Source: International Journal of Molecular Sciences; Jan2024, Vol. 25 Issue 2, p870, 17p

Subject Terms: XENOPUS laevis, GENE expression, CELL differentiation, GENETIC programming, GASTRULATION, XENOPUS, SOMATIC embryogenesis

Fluorescent ratiometric pH indicator SypHer2: Applications in neuroscience and regenerative biology

Authors: Matlashov, Mikhail E., Bogdanova, Yulia A., Ermakova, Galina V., Mishina, Natalia M., Ermakova, Yulia G., Nikitin, Evgeny S., Balaban, Pavel M., Okabe, Shigeo, Lukyanov, Sergey, Enikolopov, Grigori, Zaraisky, Andrey G., Belousov, Vsevolod V.

Source: In BBA - General Subjects November 2015 1850(11):2318-2328

The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with the transcription factor Gli1

Authors: Martynova, Natalia Y., Ermolina, Ludmila V., Ermakova, Galina V., Eroshkin, Fedor M., Gyoeva, Fatima K., Baturina, Natalia S., Zaraisky, Andrey G.

Source: In Developmental Biology 1 August 2013 380(1):37-48

Cytoskeletal Protein Zyxin Inhibits the Activity of Genes Responsible for Embryonic Stem Cell Status

Authors: Parshina, Elena A., Eroshkin, Fedor M., Оrlov, Eugeny E., Gyoeva, Fatima K., Shokhina, Arina G., Staroverov, Dmitry B., Belousov, Vsevolod V., Zhigalova, Nadezhda A., Prokhortchouk, Egor B., Zaraisky, Andrey G., Martynova, Natalia Y.

Source: Cell reports. 33(7)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100116352612.0x000001&indx=1&recIds=ETOCvdc_100116352612.0x000001

Discovery of four Noggin genes in lampreys suggests two rounds of ancient genome duplication

Authors: Ermakova, Galina V., Kucheryavyy, Alexander V., Zaraisky, Andrey G., Bayramov, Andrey V.

Source: Communications biology. 3(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190655458.0x000001&indx=1&recIds=ETOCvdc_100190655458.0x000001

Publisher Correction: Discovery of four Noggin genes in lampreys suggests two rounds of ancient genome duplication

Authors: Ermakova, Galina V., Kucheryavyy, Alexander V., Zaraisky, Andrey G., Bayramov, Andrey V.

Source: Communications biology. 3(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174867382.0x000001&indx=1&recIds=ETOCvdc_100174867382.0x000001

Wide-scale identification of novel/eliminated genes responsible for evolutionary transformations.

Authors: Lyubetsky, Vassily A., Rubanov, Lev I., Tereshina, Maria B., Ivanova, Anastasiya S., Araslanova, Karina R., Uroshlev, Leonid A., Goremykina, Galina I., Yang, Jian-Rong, Kanovei, Vladimir G., Zverkov, Oleg A., Shitikov, Alexander D., Korotkova, Daria D., Zaraisky, Andrey G.

Source: Biology Direct; 8/11/2023, Vol. 18 Issue 1, p1-21, 21p

Subject Terms: GENES, PHENOTYPIC plasticity, GENE regulatory networks, IDENTIFICATION, PLANT genetic transformation, REGULATOR genes, GENE expression, EVOLUTIONARY algorithms

Screening for mouse genes lost in mammals with long lifespans

Authors: Rubanov, Lev I., Zaraisky, Andrey G., Shilovsky, Gregory A., Seliverstov, Alexandr V., Zverkov, Oleg A., Lyubetsky, Vassily A.

Source: Biodata mining. 12(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129337242.0x000001&indx=1&recIds=ETOCvdc_100129337242.0x000001