MuST: Maximizing the Latent Capacity of Spatial Transcriptomics Data with Multi-modality Structure Transformation

Authors: Zang, Zelin, Li, Liangyu, Xu, Yongjie, Li, Jiahao, Duan, Chenrui, Sun, Yi, Lei, Zhen, Li, Stan Z.

Source: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :1321-1326 Dec, 2024

Relation: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation

Authors: Duan, ChenRui, Zang, Zelin, Li, Siyuan, Xu, Yongjie, Li, Stan Z.

Subject Terms: Quantitative Biology - Populations and Evolution, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2412.18827

DMT-HI: MOE-based Hyperbolic Interpretable Deep Manifold Transformation for Unspervised Dimensionality Reduction

Authors: Zang, Zelin, Wang, Yuhao, Wu, Jinlin, Liu, Hong, Shen, Yue, Li, Stan. Z, Lei, Zhen

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2410.19504

A Review of BioTree Construction in the Context of Information Fusion: Priors, Methods, Applications and Trends

Authors: Zang, Zelin, Xu, Yongjie, Duan, Chenrui, Yuan, Yue, Wu, Jinlin, Lei, Zhen, Li, Stan Z.

Subject Terms: Quantitative Biology - Populations and Evolution, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2410.04815

Deep Manifold Transformation for Protein Representation Learning

Authors: Hu, Bozhen, Zang, Zelin, Tan, Cheng, Li, Stan Z.

Source: ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) Acoustics, Speech and Signal Processing (ICASSP), ICASSP 2024 - 2024 IEEE International Conference on. :1801-1805 Apr, 2024

Relation: ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)

Boosting Novel Category Discovery Over Domains with Soft Contrastive Learning and All in One Classifier

Authors: Zang, Zelin, Shang, Lei, Yang, Senqiao, Wang, Fei, Sun, Baigui, Xie, Xuansong, Li, Stan Z.

Source: 2023 IEEE/CVF International Conference on Computer Vision (ICCV) ICCV Computer Vision (ICCV), 2023 IEEE/CVF International Conference on. :11824-11833 Oct, 2023

Relation: 2023 IEEE/CVF International Conference on Computer Vision (ICCV)

Set-CLIP: Exploring Aligned Semantic From Low-Alignment Multimodal Data Through A Distribution View

Authors: Song, Zijia, Zang, Zelin, Wang, Yelin, Yang, Guozheng, yu, Kaicheng, Chen, Wanyu, Wang, Miaoyu, Li, Stan Z.

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence, Computer Science - Computation and Language, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2406.05766

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

Authors: Liu, Zicheng, Li, Jiahui, Li, Siyuan, Zang, Zelin, Tan, Cheng, Huang, Yufei, Bai, Yajing, Li, Stan Z.

Subject Terms: Quantitative Biology - Genomics, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2406.01627

USD: Unsupervised Soft Contrastive Learning for Fault Detection in Multivariate Time Series

Authors: Liu, Hong, Qiu, Xiuxiu, Shi, Yiming, Zang, Zelin

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence, Electrical Engineering and Systems Science - Systems and Control

Access URL: http://arxiv.org/abs/2405.16258

Deep Manifold Graph Auto-Encoder For Attributed Graph Embedding

Authors: Hu, Bozhen, Zang, Zelin, Xia, Jun, Wu, Lirong, Tan, Cheng, Li, Stan Z.

Source: ICASSP 2023 - 2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) Acoustics, Speech and Signal Processing (ICASSP), ICASSP 2023 - 2023 IEEE International Conference on. :1-5 Jun, 2023

Relation: ICASSP 2023 - 2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)

FGBERT: Function-Driven Pre-trained Gene Language Model for Metagenomics

Authors: Duan, ChenRui, Zang, Zelin, Xu, Yongjie, He, Hang, Liu, Zihan, Li, Siyuan, Song, Zijia, Zheng, Ju-Sheng, Li, Stan Z.

Subject Terms: Quantitative Biology - Genomics, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2402.16901

Neural Network Diffusion

Authors: Wang, Kai, Tang, Dongwen, Zeng, Boya, Yin, Yida, Xu, Zhaopan, Zhou, Yukun, Zang, Zelin, Darrell, Trevor, Liu, Zhuang, You, Yang

Subject Terms: Computer Science - Machine Learning, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2402.13144

Deep Manifold Graph Auto-Encoder for Attributed Graph Embedding

Authors: Hu, Bozhen, Zang, Zelin, Xia, Jun, Wu, Lirong, Tan, Cheng, Li, Stan Z.

Source: In ICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) (pp. 1-5). IEEE

Subject Terms: Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2401.06727

Graph-level Protein Representation Learning by Structure Knowledge Refinement

Authors: Wang, Ge, Zang, Zelin, Zheng, Jiangbin, Xia, Jun, Li, Stan Z.

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence, Quantitative Biology - Biomolecules

Access URL: http://arxiv.org/abs/2401.02713

DiffAug: Enhance Unsupervised Contrastive Learning with Domain-Knowledge-Free Diffusion-based Data Augmentation

Authors: Zang, Zelin, Luo, Hao, Wang, Kai, Zhang, Panpan, Wang, Fan, Li, Stan. Z, You, Yang

Subject Terms: Computer Science - Machine Learning, Computer Science - Computational Engineering, Finance, and Science, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2309.07909

Generalized Clustering and Multi-Manifold Learning with Geometric Structure Preservation

Authors: Wu, Lirong, Liu, Zicheng, Xia, Jun, Zang, Zelin, Li, Siyuan, Li, Stan Z.

Source: 2022 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) WACV Applications of Computer Vision (WACV), 2022 IEEE/CVF Winter Conference on. :1668-1676 Jan, 2022

Relation: 2022 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)

Deep Graph Neural Networks via Posteriori-Sampling-based Node-Adaptive Residual Module

Authors: Zhou, Jingbo, Du, Yixuan, Zhang, Ruqiong, Xia, Jun, Yu, Zhizhi, Zang, Zelin, Jin, Di, Yang, Carl, Zhang, Rui, Li, Stan Z.

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2305.05368

Complex hierarchical structures analysis in single-cell data with Poincaré deep manifold transformation.

Authors: Xu, Yongjie^1,2 (AUTHOR), Zang, Zelin^1,2 (AUTHOR), Hu, Bozhen^1,2 (AUTHOR), Yuan, Yue² (AUTHOR), Tan, Cheng^1,2 (AUTHOR), Xia, Jun^1,2 (AUTHOR), Li, Stan Z² (AUTHOR)

Source: Briefings in Bioinformatics. Jan2025, Vol. 26 Issue 1, p1-14. 14p.

Subject Terms: *GENE expression profiling, *DATA augmentation, *LAPLACIAN matrices, *RNA sequencing, *CELL differentiation

EVNet: An Explainable Deep Network for Dimension Reduction

Authors: Zang, Zelin, Cheng, Shenghui, Lu, Linyan, Xia, Hanchen, Li, Liangyu, Sun, Yaoting, Xu, Yongjie, Shang, Lei, Sun, Baigui, Li, Stan Z.

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2211.15478

Boosting Novel Category Discovery Over Domains with Soft Contrastive Learning and All-in-One Classifier

Authors: Zang, Zelin, Shang, Lei, Yang, Senqiao, Wang, Fei, Sun, Baigui, Xie, Xuansong, Li, Stan Z.

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2211.11262