One-step Cre-loxP organism creation by TAx9

Authors: Martin Miguel Casco-Robles, Tomoki Echigoya, Takeaki Shimazaki, Yuri Murakami, Masaya Hirano, Fumiaki Maruo, Seiya Mizuno, Satoru Takahashi, Chikafumi Chiba

Source: Communications Biology, Vol 8, Iss 1, Pp 1-10 (2025)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/b6931aa2a5234063a35d138ba856b30b

An adult myogenic cell line of the Japanese fire-bellied newt Cynops pyrrhogaster

Authors: Shota Shiga, Yuri Murakami, Zixiao Wang, Ryo Ando, Martin Miguel Casco-Robles, Fumiaki Maruo, Fubito Toyama, Chikafumi Chiba

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-16 (2024)

Subject Terms: Newts, Adult myogenic cell line, Limb regeneration, Myogenic regulatory factors, Satellite cells, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/3579b85e11ef424c879c7cfabdb3e61b

Mutational Analysis of Substrate Recognition in Trypsin-like Protease Cocoonase: Protein Memory Induced by Alterations in Substrate-Binding Site

Authors: Nana Sakata, Shigeru Shimamoto, Yuri Murakami, Orika Ashida, Toshiki Takei, Mitsuhiro Miyazawa, Yuji Hidaka

Source: Molecules, Vol 29, Iss 22, p 5476 (2024)

Subject Terms: chaperone, chymotrypsin, cocoonase, folding, substrate binding, Organic chemistry, QD241-441

File Description: electronic resource

Relation: https://www.mdpi.com/1420-3049/29/22/5476; https://doaj.org/toc/1420-3049

Access URL: https://doaj.org/article/9728db39e7354480bf6a18ae9ed602b3

False lumen thrombus following aortic dissection diagnosed as the source of repeat lower extremity emboli with angioscopy: a case report

Authors: Riha Shimizu, Makoto Sumi, Yuri Murakami, Takao Ohki

Source: Surgical Case Reports, Vol 8, Iss 1, Pp 1-6 (2022)

Subject Terms: Chronic aortic dissection, Acute lower extremity arterial occlusion, Non-obstructive angioscopy, Coil embolization, Surgery, RD1-811

File Description: electronic resource

Relation: https://doaj.org/toc/2198-7793

Access URL: https://doaj.org/article/ae0164f321234e71b2c64caf345fcb81

A Novel Peptide Reagent for Investigating Disulfide-Coupled Folding Intermediates of Mid-Size Proteins

Authors: Nana Sakata, Yuri Murakami, Mitsuhiro Miyazawa, Shigeru Shimamoto, Yuji Hidaka

Source: Molecules, Vol 28, Iss 8, p 3494 (2023)

Subject Terms: BPTI, cocoonase, disulfide, enzyme, folding intermediate, precursor, Organic chemistry, QD241-441

File Description: electronic resource

Relation: https://www.mdpi.com/1420-3049/28/8/3494; https://doaj.org/toc/1420-3049

Access URL: https://doaj.org/article/2aa2171738c94356b9fcfe7dcdba4c7d

DNMT1 regulates the timing of DNA methylation by DNMT3 in an enzymatic activity-dependent manner in mouse embryonic stem cells

Authors: Takamasa Ito, Musashi Kubiura-Ichimaru, Yuri Murakami, Aaron B. Bogutz, Louis Lefebvre, Isao Suetake, Shoji Tajima, Masako Tada

Source: PLoS ONE, Vol 17, Iss 1 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8730390/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/99641d88b0f941718b248c99fdd478dc

Two cases of asymptomatic axillary artery occlusion difficult to diagnose preoperatively: pitfalls and its solution in endovascular therapy when approaching from the upper extremity

Authors: Ryosuke Nishie, Naoki Toya, Soichiro Fukushima, Eisaku Ito, Yuri Murakami, Takeyuki Misawa, Takao Ohki

Source: Surgical Case Reports, Vol 5, Iss 1, Pp 1-4 (2019)

Subject Terms: Axillary artery occlusion (AAO), Endovascular treatment, Surgery, RD1-811

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40792-019-0670-1; https://doaj.org/toc/2198-7793

Access URL: https://doaj.org/article/ce85d177699a46909b4ea92dd0c79970

Degradation-Suppressed Cocoonase for Investigating the Propeptide-Mediated Activation Mechanism

Authors: Nana Sakata, Ayumi Ogata, Mai Takegawa, Yuri Murakami, Misaki Nishimura, Mitsuhiro Miyazawa, Teruki Hagiwara, Shigeru Shimamoto, Yuji Hidaka

Source: Molecules, Vol 27, Iss 22, p 8063 (2022)

Subject Terms: enzyme, folding, propeptide, trypsin, zymogen, Organic chemistry, QD241-441

File Description: electronic resource

Relation: https://www.mdpi.com/1420-3049/27/22/8063; https://doaj.org/toc/1420-3049

Access URL: https://doaj.org/article/140ebaf9a0f6401a80ba73e688697467

Prophylactic accessory renal artery coil embolization for prevention of type II endoleak following endovascular aneurysm repair: a case report

Authors: Ryosuke Nishie, Naoki Toya, Soichiro Fukushima, Eisaku Ito, Yuri Murakami, Tadashi Akiba, Takao Ohki

Source: Surgical Case Reports, Vol 3, Iss 1, Pp 1-3 (2017)

Subject Terms: Accessory renal artery, Endovascular aneurysm repair, Abdominal aortic aneurysm, Surgery, RD1-811

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40792-017-0334-y; https://doaj.org/toc/2198-7793

Access URL: https://doaj.org/article/abb4e5635f744d9f888ae79eadff47db

Enhancing Automatic Classification of Hepatocellular Carcinoma Images through Image Masking, Tissue Changes, and Trabecular Features

Authors: Maulana Abdul Aziz, Hiroshi Kanazawa, Yuri Murakami, Fumikazu Kimura, Masahiro Yamaguchi, Tomoharu Kiyuna, Yoshiko Yamashita, Akira Saito, Masahiro Ishikawa, Naoki Kobayashi, Tokiya Abe, Akinori Hashiguchi, Michiie Sakamoto

Source: Analytical Cellular Pathology, Vol 2014 (2014)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2210-7177; https://doaj.org/toc/2210-7185

Access URL: https://doaj.org/article/9ddf66c523e24913aebe7ef3d6db7e3a

Whole Slide Image Analysis System for Quantification of Liver Fibrosis

Authors: Tokiya Abe, Yuri Murakami, Masahiro Yamguchi, Yoshiko Yamashita, Tomoharu Kiyuna, Ken Yamazaki, Akinori Hashiguchi, Yutaka Yasui, Masayuki Kurosaki, Namiki Izumi, Michiie Sakamoto

Source: Analytical Cellular Pathology, Vol 2014 (2014)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2210-7177; https://doaj.org/toc/2210-7185

Access URL: https://doaj.org/article/f0cf66e9295a484ebd053791871f267a

Development of a Prototype for Hepatocellular Carcinoma Classification Based on Morphological Features Automatically Measured in Whole Slide Images

Authors: Yoshiko Yamashita, Tomoharu Kiyuna, Michiie Sakamoto, Akinori Hashiguchi, Masahiro Ishikawa, Yuri Murakami, Masahiro Yamaguchi

Source: Analytical Cellular Pathology, Vol 2014 (2014)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2210-7177; https://doaj.org/toc/2210-7185

Access URL: https://doaj.org/article/6c82b517827546c69b645c188f20544f

Enhancing automatic classification of hepatocellular carcinoma images through image masking, tissue changes and trabecular features

Authors: Maulana Abdul Aziz, Hiroshi Kanazawa, Yuri Murakami, Fumikazu Kimura, Masahiro Yamaguchi, Tomoharu Kiyuna, Yoshiko Yamashita, Akira Saito, Masahiro Ishikawa, Naoki Kobayashi, Tokiya Abe, Akinori Hashiguchi, Michiie Sakamoto

Source: Journal of Pathology Informatics, Vol 6, Iss 1, Pp 26-26 (2015)

Subject Terms: Hepatocellular carcinoma, histopathological image classification, image masking, liver tissue, liver trabecular, support vector machine, Computer applications to medicine. Medical informatics, R858-859.7, Pathology, RB1-214

File Description: electronic resource

Relation: http://www.jpathinformatics.org/article.asp?issn=2153-3539;year=2015;volume=6;issue=1;spage=26;epage=26;aulast=Aziz; https://doaj.org/toc/2153-3539

Access URL: https://doaj.org/article/8fc990e013194b05ad58cff4270e3f02

Color correction for automatic fibrosis quantification in liver biopsy specimens

Authors: Yuri Murakami, Tokiya Abe, Akinori Hashiguchi, Masahiro Yamaguchi, Akira Saito, Michiie Sakamoto

Source: Journal of Pathology Informatics, Vol 4, Iss 1, Pp 36-36 (2013)

Subject Terms: Color correction, fibrosis quantification, liver biopsy, tissue classification, whole slide image, Computer applications to medicine. Medical informatics, R858-859.7, Pathology, RB1-214

File Description: electronic resource

Relation: http://www.jpathinformatics.org/article.asp?issn=2153-3539;year=2013;volume=4;issue=1;spage=36;epage=36;aulast=Murakami; https://doaj.org/toc/2153-3539

Access URL: https://doaj.org/article/c7cceb5ae075483eb4cc025e963e210d

Muscarinic suppression of ATP-sensitive K⁺ channels mediated by the M3/Gq/11/phospholipase C pathway contributes to mouse ileal smooth muscle contractions.

Authors: Ban Wang¹ (AUTHOR), Yuri Murakami¹ (AUTHOR), Maiki Ono¹ (AUTHOR), Saki Fujikawa¹ (AUTHOR), Hayato Matsuyama² (AUTHOR), Toshihiro Unno² (AUTHOR), Kiyotada Naitou³ (AUTHOR), Yasuyuki Tanahashi¹ (AUTHOR) ytanavet@cc.kyoto-su.ac.jp

Source: American Journal of Physiology: Gastrointestinal & Liver Physiology. Oct2018, Vol. 315 Issue 4, pG618-G630. 13p. 9 Graphs.

Automatic quantification of morphological features for hepatic trabeculae analysis in stained liver specimens.

Authors: Masahiro Ishikawa, Yuri Murakami, Ahi, Sercan Taha, Masahiro Yamaguchi, Naoki Kobayashi, Tomoharu Kiyuna, Yoshiko Yamashita, Akira Saito, Tokiya Abe, Akinori Hashiguchi, Michiie Sakamoto

Source: Journal of Medical Imaging; Apr-Jun2016, Vol. 3 Issue 2, p1-13, 13p

Inhibitory effects of SKF96365 on the activities of K+ channels in mouse small intestinal smooth muscle cells.

Authors: Yasuyuki Tanahashi, Ban Wang, Yuri Murakami, Toshihiro Unno, Hayato Matsuyama, Hiroshi Nagano, Seiichi Komori

Source: Journal of Veterinary Medical Science; Feb2016, Vol. 78 Issue 2, p203-211, 9p

Subject Terms: TRP channels, TRANSGENIC mice, PHYSIOLOGY

Color conversion method for multi-primary display for spectral color reproduction.

Authors: Yuri Murakami

Source: Journal of Electronic Imaging; Oct2004, Vol. 13 Issue 4, p701-708, 8p