Proteogenomic landscape of gastric adenocarcinoma peritoneal metastases

Authors: Zhao, Shuangtao ^{1, 6}, Wang, Ruiping ¹, Song, Shumei ², Hao, Dapeng ¹, Han, Guangchun ¹, Song, Xingzhi ¹, Zhang, Jianhua ¹, Pizzi, Melissa Pool ², Shanbhag, Namita ², Futreal, Andrew ¹, Badgwell, Brian ³, Harada, Kazuto ², Calin, George ⁴, Vykoukal, Jody ⁵, Yu, Chuan-Yih ⁵, Katayama, Hiroyuki ⁵, Hanash, Samir M. ^{5, ∗}, Wang, Linghua ^{1, 7, ∗∗}, Ajani, Jaffer A. ^{2, ∗∗∗}

Source: In iScience 16 June 2023 26(6)

A Comprehensive Search of Non-Canonical Proteins in Non-Small Cell Lung Cancer and Their Impact on the Immune Response.

Authors: Irajizad, Ehsan, Fahrmann, Johannes F., Long, James P., Vykoukal, Jody, Kobayashi, Makoto, Capello, Michela, Yu, Chuan-Yih, Cai, Yining, Hsiao, Fu Chung, Patel, Nikul, Park, Soyoung, Peng, Qian, Dennison, Jennifer B., Kato, Taketo, Tai, Mei Chee, Taguchi, Ayumu, Kadara, Humam, Wistuba, Ignacio I., Katayama, Hiroyuki, Do, Kim-Anh

Source: International Journal of Molecular Sciences; Aug2022, Vol. 23 Issue 16, p8933-N.PAG, 11p

Subject Terms: NON-small-cell lung carcinoma, IMMUNE response, AUTOANTIBODIES, FRAMESHIFT mutation, PROTEINS, NON-coding RNA

Association Between Plasma Diacetylspermine and Tumor Spermine Synthase With Outcome in Triple-Negative Breast Cancer.

Authors: Fahrmann, Johannes F, Vykoukal, Jody, Fleury, Alia, Tripathi, Satyendra, Dennison, Jennifer B, Murage, Eunice, Wang, Peng, Yu, Chuan-Yih, Capello, Michela, Creighton, Chad J, Do, Kim-Anh, Long, James P, Irajizad, Ehsan, Peterson, Christine, Katayama, Hiroyuki, Disis, Mary L, Arun, Banu, Hanash, Samir

Source: JNCI: Journal of the National Cancer Institute; Jun2020, Vol. 112 Issue 6, p607-616, 10p, 1 Diagram, 1 Chart, 5 Graphs

Subject Terms: SPERMINE, FISHER exact test, PROPORTIONAL hazards models, ORNITHINE decarboxylase, PROGESTERONE receptors, RESEARCH, LIQUID chromatography, ANIMAL experimentation, RESEARCH methodology, PROGNOSIS, METASTASIS, EVALUATION research, MEDICAL cooperation, AMINES, TUMOR classification, GENE expression, COMPARATIVE studies, TRANSFERASES, MASS spectrometry, RESEARCH funding, BREAST tumors, MICE

8‑plex LC–MS/MS Analysis of Permethylated N‑Glycans Achieved by Using Stable Isotopic Iodomethane.

Authors: Dong, Xue¹, Peng, Wenjing¹, Yu, Chuan-Yih², Zhou, Shiyue¹, Donohoo, Kaitlyn B.¹, Tang, Haixu², Mechref, Yehia¹ yehia.mechref@ttu.edu

Source: Analytical Chemistry. 9/17/2019, Vol. 91 Issue 18, p11794-11802. 9p.

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Software Tools for Glycan Profiling.

Authors: Yu, Chuan-Yih, Mayampurath, Anoop, Tang, Haixu

Source: Mass Spectrometry of Glycoproteins; 2013, p269-276, 8p

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Plasma Based Protein Signatures Associated with Small Cell Lung Cancer.

Authors: Fahrmann, Johannes F., Katayama, Hiroyuki, Irajizad, Ehsan, Chakraborty, Ashish, Kato, Taketo, Mao, Xiangying, Park, Soyoung, Murage, Eunice, Rusling, Leona, Yu, Chuan-Yih, Cai, Yinging, Hsiao, Fu Chung, Dennison, Jennifer B., Tran, Hai, Ostrin, Edwin, Wilson, David O., Yuan, Jian-Min, Vykoukal, Jody, Hanash, Samir

Source: Cancers; Aug2021, Vol. 13 Issue 16, p3972, 1p

Subject Terms: LUNG cancer, BIOMARKERS, PROTEINS, PROTEOMICS, TUMOR classification, EPITHELIAL-mesenchymal transition, TUMOR suppressor genes, TUMOR markers, RECEIVER operating characteristic curves

Proteome Profiling Uncovers an Autoimmune Response Signature That Reflects Ovarian Cancer Pathogenesis.

Authors: Kobayashi, Makoto, Katayama, Hiroyuki, Irajizad, Ehsan, Vykoukal, Jody V., Fahrmann, Johannes F., Kundnani, Deepali L., Yu, Chuan-Yih, Cai, Yining, Hsiao, Fu Chung, Yang, Wei-Lei, Lu, Zhen, Celestino, Joseph, Long, James P., Do, Kim-Ann, Lu, Karen H., Ladd, Jon J., Urban, Nicole, Bast Jr., Robert C., Hanash, Samir M.

Source: Cancers; Feb2020, Vol. 12 Issue 2, p485, 1p

Subject Terms: ANTIGEN-antibody reactions, AUTOANTIBODIES, IMMUNOGLOBULINS, MASS spectrometry, OVARIAN tumors, RECOMBINANT proteins, PROTEOMICS, PROTEIN microarrays

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