Combinatorial transcription factor binding encodes cis-regulatory wiring of mouse forebrain GABAergic neurogenesis

Authors: Catta-Preta, Rinaldo ^{1, 10, 11, 12, 13}, Lindtner, Susan ^{2, 10}, Ypsilanti, Athena ², Seban, Nicolas ¹, Price, James D. ², Abnousi, Armen ^{3, 14}, Su-Feher, Linda ¹, Wang, Yurong ¹, Cichewicz, Karol ¹, Boerma, Sally A. ¹, Juric, Ivan ³, Jones, Ian R. ^{8, 9}, Akiyama, Jennifer A. ⁴, Hu, Ming ³, Shen, Yin ^{8, 9}, Visel, Axel ^{4, 5, 7}, Pennacchio, Len A. ^{4, 5, 6}, Dickel, Diane E. ^{4, 15}, Rubenstein, John L.R. ^{2, ∗}, Nord, Alex S. ^{1, 16, ∗}

Source: In Developmental Cell 20 January 2025 60(2):288-304

Five autism-associated transcriptional regulators target shared loci proximal to brain-expressed genes

Authors: Fazel Darbandi, Siavash, An, Joon-Yong, Lim, Kenneth, Page, Nicholas F., Liang, Lindsay, Young, David M., Ypsilanti, Athena R., State, Matthew W., Nord, Alex S., Sanders, Stephan J., Rubenstein, John L.R.

Source: In Cell Reports 25 June 2024 43(6)

Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia

Authors: Su-Feher, Linda, Rubin, Anna N., Silberberg, Shanni N., Catta-Preta, Rinaldo, Lim, Kenneth J., Ypsilanti, Athena R., Zdilar, Iva, McGinnis, Christopher S., McKinsey, Gabriel L., Rubino, Thomas E., Hawrylycz, Michael J., Thompson, Carol, Gartner, Zev J., Puelles, Luis, Zeng, Hongkui, Rubenstein, John L. R., Nord, Alex S.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Apr 01. 119(15), 1-12.

Access URL: https://www.jstor.org/stable/27151796

Transcriptional network orchestrating regional patterning of cortical progenitors

Authors: Ypsilanti, Athena R., Pattabiraman, Kartik, Catta-Preta, Rinaldo, Golonzhka, Olga, Lindtner, Susan, Tang, Ke, Jones, Ian R., Abnousi, Armen, Juric, Ivan, Hu, Ming, Shen, Yin, Dickel, Diane E., Visel, Axel, Pennacchio, Len A., Hawrylycz, Michael, Thompson, Carol L., Zeng, Hongkui, Barozzi, Iros, Nord, Alex S., Rubenstein, John L.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Dec . 118(51), 1-12.

Access URL: https://www.jstor.org/stable/27117501

Autism risk gene POGZ promotes chromatin accessibility and expression of clustered synaptic genes

Authors: Markenscoff-Papadimitriou, Eirene, Binyameen, Fadya, Whalen, Sean, Price, James, Lim, Kenneth, Ypsilanti, Athena R., Catta-Preta, Rinaldo, Pai, Emily Ling-Lin, Mu, Xin, Xu, Duan, Pollard, Katherine S., Nord, Alex S., State, Matthew W., Rubenstein, John L.

Source: In Cell Reports 7 December 2021 37(10)

Ultraconserved Enhancers Are Required for Normal Development

Authors: Dickel, Diane E., Ypsilanti, Athena R., Pla, Ramón, Zhu, Yiwen, Barozzi, Iros, Mannion, Brandon J., Khin, Yupar S., Fukuda-Yuzawa, Yoko, Plajzer-Frick, Ingrid, Pickle, Catherine S., Lee, Elizabeth A., Harrington, Anne N., Pham, Quan T., Garvin, Tyler H., Kato, Momoe, Osterwalder, Marco, Akiyama, Jennifer A., Afzal, Veena, Rubenstein, John L.R., Pennacchio, Len A., Visel, Axel

Source: In Cell 25 January 2018 172(3):491-499

Pbx Regulates Patterning of the Cerebral Cortex in Progenitors and Postmitotic Neurons

Authors: Golonzhka, Olga, Nord, Alex, Tang, Paul L.F., Lindtner, Susan, Ypsilanti, Athena R., Ferretti, Elisabetta, Visel, Axel, Selleri, Licia, Rubenstein, John L.R.

Source: In Neuron 16 December 2015 88(6):1192-1207

Increased expression of glial fibrillary acidic protein in prefrontal cortex in psychotic illness

Authors: Feresten, Abigail H., Barakauskas, Vilte, Ypsilanti, Athena, Barr, Alasdair M., Beasley, Clare L.

Source: In Schizophrenia Research October 2013 150(1):252-257

A regulatory toolbox of MiniPromoters to drive selective expression in the brain

Authors: Portales-Casamar, Elodie, Swanson, Douglas J., Liu, Li, de Leeuw, Charles N., Banks, Kathleen G., Sui, Shannan J. Ho, Fulton, Debra L., Ali, Johar, Amirabbasi, Mahsa, Arenillas, David J., Babyak, Nazar, Black, Sonia F., Bonaguro, Russell J., Brauer, Erich, Candido, Tara R., Castellarin, Mauro, Chen, Jing, Chen, Ying, Cheng, Jason C. Y., Chopra, Vik, Docking, T. Roderick, Dreolini, Lisa, D'Souza, Cletus A., Flynn, Erin K., Glenn, Randy, Hatakka, Kristi, Hearty, Taryn G., Imanian, Behzad, Jiang, Steven, Khorasan-zadeh, Shadi, Komljenovic, Ivana, Laprise, Stéphanie, Liao, Nancy Y., Lim, Jonathan S., Lithwick, Stuart, Liu, Flora, Liu, Jun, Lu, Meifen, McConechy, Melissa, McLeod, Andrea J., Milisavljevic, Marko, Mis, Jacek, O'Connor, Katie, Palma, Betty, Palmquist, Diana L., Schmouth, Jean-François, Swanson, Magdalena I., Tam, Bonny, Ticoll, Amy, Turner, Jenna L., Varhol, Richard, Vermeulen, Jenny, Watkins, Russell F., Wilson, Gary, Wong, Bibiana K. Y., Wong, Siaw H., Wong, Tony Y. T., Yang, George S., Ypsilanti, Athena R., Jones, Steven J. M., Holt, Robert A., Goldowitz, Daniel, Wasserman, Wyeth W., Simpson, Elizabeth M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2010 Sep . 107(38), 16589-16594.

Access URL: https://www.jstor.org/stable/20779711

Effects of sub-chronic clozapine and haloperidol administration on brain lipid levels

Authors: Barakauskas, Vilte E., Ypsilanti, Athena R., Barr, Alasdair M., Innis, Sheila M., Honer, William G., Beasley, Clare L.

Source: In Progress in Neuropsychopharmacology & Biological Psychiatry 2010 34(4):669-673

The length of hippocampal cholinergic fibers is reduced in the aging brain

Authors: Ypsilanti, Athéna Rebecca, Girão da Cruz, M. Teresa, Burgess, Alison, Aubert, Isabelle

Source: In Neurobiology of Aging 2008 29(11):1666-1679

Polysialic acid limits septal neurite outgrowth on laminin

Authors: Burgess, Alison, Weng, Ying-Qi, Ypsilanti, Athéna Rebecca, Cui, Xuezhi, Caines, Geoffrey, Aubert, Isabelle

Source: In Brain Research 2007 1144:52-58

DLX1 and the NuRD complex cooperate in enhancer decommissioning and transcriptional repression.

Authors: Price, James D., Lindtner, Susan, Ypsilanti, Athena, Binyameen, Fadya, Johnson, Jeffrey R., Newton, Billy W., Krogan, Nevan J., Rubenstein, John L. R.

Source: Development (09501991); Jun2022, Vol. 149 Issue 11, p1-16, 16p

Subject Terms: TRANSCRIPTION factors, HETEROZYGOSITY, PRODUCTION increases, CHROMATIN

Ultraconserved enhancer function does not require perfect sequence conservation

Authors: Snetkova, Valentina, Ypsilanti, Athena R., Akiyama, Jennifer A., Mannion, Brandon J., Plajzer-Frick, Ingrid, Novak, Catherine S., Harrington, Anne N., Pham, Quan T., Kato, Momoe, Zhu, Yiwen, Godoy, Janeth, Meky, Eman, Hunter, Riana D., Shi, Marie, Kvon, Evgeny Z., Afzal, Veena, Tran, Stella, Rubenstein, John L. R., Visel, Axel, Pennacchio, Len A., Dickel, Diane E.

Source: Nature Genetics; 20210101, Issue: Preprints p1-8, 8p

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