AutoEval Done Right: Using Synthetic Data for Model Evaluation

Authors: Boyeau, Pierre, Angelopoulos, Anastasios N., Yosef, Nir, Malik, Jitendra, Jordan, Michael I.

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence, Computer Science - Computation and Language, Statistics - Methodology

Access URL: http://arxiv.org/abs/2403.07008

Lessons from ATLAS and CMS measurements of Higgs boson decays to second generation fermions

Authors: Yosef Nir, Purvaash Panduranghan Udhayashankar

Source: Journal of High Energy Physics, Vol 2024, Iss 6, Pp 1-17 (2024)

Subject Terms: Multi-Higgs Models, SMEFT, Theories of Flavour, Vector-Like Fermions, Nuclear and particle physics. Atomic energy. Radioactivity, QC770-798

File Description: electronic resource

Relation: https://doaj.org/toc/1029-8479

Access URL: https://doaj.org/article/ed16131a28eb4f399b25abcde7603d0f

The flavor of a light charged Higgs

Authors: Nicolás Bernal, Marta Losada, Yosef Nir, Yogev Shpilman

Source: Journal of High Energy Physics, Vol 2023, Iss 10, Pp 1-23 (2023)

Subject Terms: Multi-Higgs Models, Specific BSM Phenomenology, Nuclear and particle physics. Atomic energy. Radioactivity, QC770-798

File Description: electronic resource

Relation: https://doaj.org/toc/1029-8479

Access URL: https://doaj.org/article/ff124ee41e77436eaed46749f2b8bf49

Time-resolved single-cell transcriptomics defines immune trajectories in glioblastoma

Authors: Kirschenbaum, Daniel, Xie, Ken, Ingelfinger, Florian, Katzenelenbogen, Yonatan, Abadie, Kathleen, Look, Thomas, Sheban, Fadi, Phan, Truong San, Li, Baoguo, Zwicky, Pascale, Yofe, Ido, David, Eyal, Mazuz, Kfir, Hou, Jinchao, Chen, Yun, Shaim, Hila, Shanley, Mayra, Becker, Soeren, Qian, Jiawen, Colonna, Marco, Ginhoux, Florent, Rezvani, Katayoun, Theis, Fabian J., Yosef, Nir, Weiss, Tobias, Weiner, Assaf, Amit, Ido

Source: In Cell 4 January 2024 187(1):149-165

Decision-Making with Auto-Encoding Variational Bayes

Authors: Lopez, Romain, Boyeau, Pierre, Yosef, Nir, Jordan, Michael I., Regier, Jeffrey

Source: Advances in Neural Information Processing Systems 2020

Subject Terms: Statistics - Machine Learning, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2002.07217

A joint model of unpaired data from scRNA-seq and spatial transcriptomics for imputing missing gene expression measurements

Authors: Lopez, Romain, Nazaret, Achille, Langevin, Maxime, Samaran, Jules, Regier, Jeffrey, Jordan, Michael I., Yosef, Nir

Subject Terms: Computer Science - Machine Learning, Quantitative Biology - Genomics, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1905.02269

Parametric resonance in neutrino oscillations induced by ultra-light dark matter and implications for KamLAND and JUNO

Authors: Marta Losada, Yosef Nir, Gilad Perez, Inbar Savoray, Yogev Shpilman

Source: Journal of High Energy Physics, Vol 2023, Iss 3, Pp 1-16 (2023)

Subject Terms: New Light Particles, Non-Standard Neutrino Properties, Specific BSM Phenomenology, Nuclear and particle physics. Atomic energy. Radioactivity, QC770-798

File Description: electronic resource

Relation: https://doaj.org/toc/1029-8479

Access URL: https://doaj.org/article/8080646fe3c349e1954aca2f7accf242

The branching fraction of B s 0 → K 0 K ¯ 0 $$ {B}_s^0\to {K}^0{\overline{K}}^0 $$ : three puzzles

Authors: Yasmine Amhis, Yuval Grossman, Yosef Nir

Source: Journal of High Energy Physics, Vol 2023, Iss 2, Pp 1-14 (2023)

Subject Terms: Bottom Quarks, CP Violation, Flavour Symmetries, Nuclear and particle physics. Atomic energy. Radioactivity, QC770-798

File Description: electronic resource

Relation: https://doaj.org/toc/1029-8479

Access URL: https://doaj.org/article/de83b08ca8364b1686d6628a2ef35ca1

Sodium perturbs mitochondrial respiration and induces dysfunctional Tregs

Authors: Côrte-Real, Beatriz F., Hamad, Ibrahim, Arroyo Hornero, Rebeca, Geisberger, Sabrina, Roels, Joris, Van Zeebroeck, Lauren, Dyczko, Aleksandra, van Gisbergen, Marike W., Kurniawan, Henry, Wagner, Allon, Yosef, Nir, Weiss, Susanne N.Y., Schmetterer, Klaus G., Schröder, Agnes, Krampert, Luka, Haase, Stefanie, Bartolomaeus, Hendrik, Hellings, Niels, Saeys, Yvan, Dubois, Ludwig J., Brenner, Dirk, Kempa, Stefan, Hafler, David A., Stegbauer, Johannes, Linker, Ralf A., Jantsch, Jonathan, Müller, Dominik N., Kleinewietfeld, Markus

Source: In Cell Metabolism 7 February 2023 35(2):299-315

A Deep Generative Model for Semi-Supervised Classification with Noisy Labels

Authors: Langevin, Maxime, Mehlman, Edouard, Regier, Jeffrey, Lopez, Romain, Jordan, Michael I., Yosef, Nir

Subject Terms: Computer Science - Machine Learning, Statistics - Machine Learning, 68T37

Access URL: http://arxiv.org/abs/1809.05957

Information Constraints on Auto-Encoding Variational Bayes

Authors: Lopez, Romain, Regier, Jeffrey, Jordan, Michael I., Yosef, Nir

Source: Advances in Neural Information Processing Systems 31 (2018)

Subject Terms: Computer Science - Machine Learning, Quantitative Biology - Genomics, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1805.08672

Lessons from the LHCb measurement of CP violation in B s → K + K −

Authors: Yosef Nir, Inbar Savoray, Yehonatan Viernik

Source: Journal of High Energy Physics, Vol 2022, Iss 7, Pp 1-19 (2022)

Subject Terms: CP Violation, Flavour Symmetries, Other Weak Scale BSM Models, SMEFT, Nuclear and particle physics. Atomic energy. Radioactivity, QC770-798

File Description: electronic resource

Relation: https://doaj.org/toc/1029-8479

Access URL: https://doaj.org/article/ee503ecb68834c468cbaac21fbb757f7

b → cτ ν ¯ $$ \overline{\nu} $$ e,μ contributions to R(D(*))

Authors: Shikma Bressler, Federico De Vito Halevy, Yosef Nir

Source: Journal of High Energy Physics, Vol 2022, Iss 7, Pp 1-15 (2022)

Subject Terms: Semi-Leptonic Decays, SMEFT, Specific BSM Phenomenology, Nuclear and particle physics. Atomic energy. Radioactivity, QC770-798

File Description: electronic resource

Relation: https://doaj.org/toc/1029-8479

Access URL: https://doaj.org/article/7d6d55c1a13c4f03b7a2bc126abd4287

Characterization of transcript enrichment and detection bias in single-nucieus RNA-seq for mapping of distinct human adipocyte lineages

Authors: Gupta, Anushka, Shamsi, Farnaz, Altemose, Nicolas, Dorihiac, Gabriel F., Cypess, Aaron M., White, Andrew P., Yosef, Nir, Patti, Mary Elizabeth, Tseng, Yu-Hua, Streets, Aaron

Source: Genome research. 32(2):242-257

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN628600051&indx=1&recIds=ETOCRN628600051

Mucosal Vaccination with Cyclic Dinucleotide Adjuvants Induces Effective T Cell Homing and IL-17—Dependent Protection against Mycobacterium tuberculosis Infection

Authors: Jong, Robyn M., Van Dis, Erik, Berry, Samuel B., Nguyenla, Xammy, Baltodano, Alexander, Pastenkos, Gabrielle, Xu, Chenling, Fox, Douglas, Yosef, Nir, McWhirter, Sarah M.

Source: Journal of immunology. 208(2):407-419

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN628446671&indx=1&recIds=ETOCRN628446671

Identifying cell state—associated alternative splicing events and their coregulation

Authors: Najar, Carlos F. Buen Abad, Burra, Prakruthi, Yosef, Nir, Lareau, Liana F.

Source: Genome research. 32(7):1385-1397

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN629862879&indx=1&recIds=ETOCRN629862879

Induction of a colitogenic phenotype in Th1-like cells depends on interleukin-23 receptor signaling

Authors: Pawlak, Mathias, DeTomaso, David, Schnell, Alexandra, Meyer zu Horste, Gerd, Lee, Youjin, Nyman, Jackson, Dionne, Danielle, Regan, Brianna M.L., Singh, Vasundhara, Delorey, Toni, Schramm, Markus A., Wang, Chao, Wallrapp, Antonia, Burkett, Patrick R., Riesenfeld, Samantha J., Anderson, Ana C., Regev, Aviv, Xavier, Ramnik J., Yosef, Nir, Kuchroo, Vijay K.

Source: In Immunity 13 September 2022 55(9):1663-1679

Ets21C sustains a pro-regenerative transcriptional program in blastema cells of Drosophila imaginal discs

Authors: Worley, Melanie I., Everetts, Nicholas J., Yasutomi, Riku, Chang, Rebecca J., Saretha, Shrey, Yosef, Nir, Hariharan, Iswar K.

Source: In Current Biology 8 August 2022 32(15):3350-3364

A deep generative model for single-cell RNA sequencing with application to detecting differentially expressed genes

Authors: Lopez, Romain, Regier, Jeffrey, Cole, Michael, Jordan, Michael, Yosef, Nir

Subject Terms: Computer Science - Learning, Quantitative Biology - Genomics, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1710.05086

A deep generative model for gene expression profiles from single-cell RNA sequencing

Authors: Lopez, Romain, Regier, Jeffrey, Cole, Michael, Jordan, Michael, Yosef, Nir

Subject Terms: Computer Science - Learning, Quantitative Biology - Genomics, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1709.02082