Structurally divergent and recurrently mutated regions of primate genomes

Authors: Mao, Yafei, Harvey, William T., Porubsky, David, Munson, Katherine M., Hoekzema, Kendra, Lewis, Alexandra P., Audano, Peter A., Rozanski, Allison, Yang, Xiangyu, Zhang, Shilong, Yoo, DongAhn, Gordon, David S., Fair, Tyler, Wei, Xiaoxi, Logsdon, Glennis A., Haukness, Marina, Dishuck, Philip C., Jeong, Hyeonsoo, del Rosario, Ricardo, Bauer, Vanessa L., Fattor, Will T., Wilkerson, Gregory K., Mao, Yuxiang, Shi, Yongyong, Sun, Qiang, Lu, Qing, Paten, Benedict, Bakken, Trygve E., Pollen, Alex A., Feng, Guoping, Sawyer, Sara L., Warren, Wesley C., Carbone, Lucia, Eichler, Evan E.

Source: In Cell 14 March 2024 187(6):1547-1562

Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors

Authors: Jeon, Soomin, Jung, Jaehoon, Kim, Kwondo, Yoo, DongAhn, Lee, Chanho, Kang, Jungsun, Cho, Kyungjin, Kang, Dae-Kyung, Kwak, Woori, Yoon, Sook Hee, Kim, Heebal, Cho, Seoae

Source: In Infection, Genetics and Evolution September 2017 53:218-226

The complete sequence and comparative analysis of ape sex chromosomes.

Authors: Makova, Kateryna D., Pickett, Brandon D., Harris, Robert S., Hartley, Gabrielle A., Cechova, Monika, Pal, Karol, Nurk, Sergey, Yoo, DongAhn, Li, Qiuhui, Hebbar, Prajna, McGrath, Barbara C., Antonacci, Francesca, Aubel, Margaux, Biddanda, Arjun, Borchers, Matthew, Bornberg-Bauer, Erich, Bouffard, Gerard G., Brooks, Shelise Y., Carbone, Lucia, Carrel, Laura

Source: Nature; Jun2024, Vol. 630 Issue 8016, p401-411, 11p

The variation and evolution of complete human centromeres.

Authors: Logsdon, Glennis A., Rozanski, Allison N., Ryabov, Fedor, Potapova, Tamara, Shepelev, Valery A., Catacchio, Claudia R., Porubsky, David, Mao, Yafei, Yoo, DongAhn, Rautiainen, Mikko, Koren, Sergey, Nurk, Sergey, Lucas, Julian K., Hoekzema, Kendra, Munson, Katherine M., Gerton, Jennifer L., Phillippy, Adam M., Ventura, Mario, Alexandrov, Ivan A., Eichler, Evan E.

Source: Nature; May2024, Vol. 629 Issue 8010, p136-145, 10p

Identification of potential biomarkers for diagnosis of pancreatic and biliary tract cancers by sequencing of serum microRNAs.

Authors: Kim, Kwondo^1,2 (AUTHOR) bigkd@snu.ac.kr, Yoo, DongAhn^1,2 (AUTHOR) dongahn.yoo@gmail.com, Lee, Hee Seung³ (AUTHOR) LHS6865@yuhs.ac, Lee, Kyong Joo³ (AUTHOR) smild123@yonsei.ac.kr, Park, Soo Been³ (AUTHOR) ELLIE0813@yuhs.ac, Kim, Chanyang³ (AUTHOR) MISSKCY90@yuhs.ac, Jo, Jung Hyun^3,4 (AUTHOR) JUNGHYUNJO83@yuhs.ac, Jung, Dawoon E.⁵ (AUTHOR) estherjung@yuhs.ac, Song, Si Young^3,5 (AUTHOR) sysong@yuhs.ac

Source: BMC Medical Genomics. 5/16/2019, Vol. 12 Issue 1, p1-11. 11p.

Subject Terms: *GALLBLADDER, *BILIARY tract, *REVERSE transcriptase polymerase chain reaction

In silico SARS-CoV-2 vaccine development for Omicron strain using reverse vaccinology.

Authors: Li, Vladimir, Lee, Chul, Yoo, DongAhn, Cho, Seoae, Kim, Heebal

Source: Genes & Genomics; Aug2022, Vol. 44 Issue 8, p937-944, 8p

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De novo emergence and potential function of human-specific tandem repeats in brain-related loci.

Authors: Kim, Kwondo, Bang, Sohyun, Yoo, DongAhn, Kim, Heebal, Suzuki, Shunsuke

Source: Human Genetics; Jun2019, Vol. 138 Issue 6, p661-672, 12p

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Corrigendum to “Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors” [Infect. Genet. Evol. 9 (2017) 218–226]

Authors: Jeon, Soomin, Jung, Jaehoon, Kim, Kwondo, Yoo, DongAhn, Lee, Chanho, Kang, Jungsun, Cho, Kyungjin, Kang, Dae-Kyung, Kwak, Woori, Yoon, Sook Hee, Kim, Heebal, Cho, Seoae

Source: In Infection, Genetics and Evolution April 2018 59:186-186

Comparative genomic analysis of Lactobacillus plantarum GB-LP4 and identification of evolutionarily divergent genes in high-osmolarity environment.

Authors: Jung, Jaehoon, Kim, Kwondo, Yoo, DongAhn, Lee, Chanho, Kang, Jungsun, Cho, Kyungjin, Kang, Dae-Kyung, Kwak, Woori, Yoon, Sook Hee, Sohn, Hawsun, Kim, Heebal, Cho, Seoae

Source: Genes & Genomics; Feb2018, Vol. 40 Issue 2, p217-223, 7p

Author Correction: Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms.

Authors: Nam, Bo-Hye¹, Yoo, DongAhn², Kim, Young-Ok¹, Park, Jung Youn¹, Shin, Younhee³, Shin, Ga-hee³, Park, Chan-Il⁴, Kim, Heebal^2,5,6, Kwak, Woori⁵ asleo@cnkgenomics.com

Source: Scientific Reports. 1/28/2020, Vol. 10 Issue 1, p1-1. 1p.

Subject Terms: *NUCLEOTIDE sequencing, *PAGRUS, *FISH breeding

Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data.

Authors: Bang, Sohyun^1,2 (AUTHOR), Yoo, DongAhn¹ (AUTHOR), Kim, Soo-Jin³ (AUTHOR), Jhang, Soyun^1,2 (AUTHOR), Cho, Seoae² (AUTHOR), Kim, Heebal^1,2,3 (AUTHOR) heebal@snu.ac.kr

Source: Scientific Reports. 7/15/2019, Vol. 9 Issue 1, pN.PAG-N.PAG. 1p.

Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms.

Authors: Nam, Bo-Hye¹ (AUTHOR), Yoo, DongAhn² (AUTHOR), Kim, Young-Ok¹ (AUTHOR), Park, Jung Youn¹ (AUTHOR), Shin, Younhee³ (AUTHOR), Shin, Ga-hee³ (AUTHOR), Park, Chan-Il⁴ (AUTHOR), Kim, Heebal^2,5,6 (AUTHOR), Kwak, Woori⁵ (AUTHOR) asleo@cnkgenomics.com

Source: Scientific Reports. 4/24/2019, Vol. 9 Issue 1, pN.PAG-N.PAG. 1p.

Genetic Adaptations in Mudskipper and Tetrapod Give Insights into Their Convergent Water-to-Land Transition.

Authors: Kim, Juwan, Lee, Chul, Yoo, DongAhn, Kim, Heebal, Albert, James

Source: Animals (2076-2615); Feb2021, Vol. 11 Issue 2, p584-584, 1p

Subject Terms: GENE families, GENES, KIDNEY development, PHYSIOLOGICAL adaptation, REFRACTION (Optics), COMPARATIVE genomics, DNA repair