CRISPR/Cas12a-based genome editing for cyanophage of Anabeana sp.

Authors: Shengjian Yuan, Yanchen Li, Chunhua Kou, YiChen Sun, Yingfei Ma

Source: Synthetic and Systems Biotechnology, Vol 10, Iss 1, Pp 140-147 (2025)

Subject Terms: Biotechnology, TP248.13-248.65, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405805X24001303; https://doaj.org/toc/2405-805X

Access URL: https://doaj.org/article/894dc58da1164256a0212e1facfeca68

Applications of bacteriophages in precision engineering of the human gut microbiome

Authors: Xiaoxian Kuang, Juntao Shen, Linggang Zheng, Yi Duan, Yingfei Ma, Elaine Lai-Han Leung, Lei Dai

Source: Engineering Microbiology, Vol 5, Iss 1, Pp 100189- (2025)

Subject Terms: Bacteriophages, Microbiome engineering, Human gut microbiome, Biotechnology, TP248.13-248.65, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667370325000013; https://doaj.org/toc/2667-3703

Access URL: https://doaj.org/article/3cca817de2ba4a958a9734bafd49419b

Reply to: Inaccurate viral prediction leads to overestimated diversity of the archaeal virome in the human gut

Authors: Yongming Wang, Ran Li, Yingfei Ma

Source: Nature Communications, Vol 15, Iss 1, Pp 1-3 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/46a9a16d23ea4df88946c278ee3893fd

Data‐Driven Engineering of Phages with Tunable Capsule Tropism for Klebsiella pneumoniae

Authors: Chao Wang, Shiwei Wang, Shisong Jing, Yuan Zeng, Lili Yang, Yongqi Mu, Zixuan Ding, Yuqin Song, Yanmei Sun, Gang Zhang, Dawei Wei, Ming Li, Yingfei Ma, Haijian Zhou, Linhuan Wu, Jie Feng

Source: Advanced Science, Vol 11, Iss 33, Pp n/a-n/a (2024)

Subject Terms: antimicrobial resistance, host‐range, phages, receptor‐binding proteins, synthetic biology, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2198-3844

Access URL: https://doaj.org/article/f7d272e4ccca439498b1227d3dd99130

Oxygen self-sufficient nanodroplet composed of fluorinated polymer for high-efficiently PDT eradicating oral biofilm

Authors: Bing Cao, Yingfei Ma, Jian Zhang, Yanan Wang, Yating Wen, Yun li, Ruixue Wang, Donghai Cao, Ruiping Zhang

Source: Materials Today Bio, Vol 26, Iss , Pp 101091- (2024)

Subject Terms: Oral-biofilm, Dental caries, Nanodroplets, AIE photosensitizer, Fluorinated-polymer, Medicine (General), R5-920, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590006424001509; https://doaj.org/toc/2590-0064

Access URL: https://doaj.org/article/a09bbd3f2055458a87241a9e85101520

Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut

Authors: Ran Li, Yongming Wang, Han Hu, Yan Tan, Yingfei Ma

Source: Nature Communications, Vol 13, Iss 1, Pp 1-12 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/31cfa29c4e094c519bfbfb97c5b2f33b

Case control study comparing the HPV genome in patients with oral cavity squamous cell carcinoma to normal patients using metagenomic shotgun sequencing

Authors: Ian Ganly, Zhiheng Pei, Yuhan Hao, Yingfei Ma, Matthew Rosenthal, Zhenglin Wu, Jocelyn Migliacci, Bin Huang, Nora Katabi, Wenzhi Tseng, Stuart Brown, Yi-Wei Tang, Liying Yang

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-9 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/28c3bdf55796428aa654af7e652236f0

A neural network‐based framework to understand the type 2 diabetes‐related alteration of the human gut microbiome

Authors: Shun Guo, Haoran Zhang, Yunmeng Chu, Qingshan Jiang, Yingfei Ma

Source: iMeta, Vol 1, Iss 2, Pp n/a-n/a (2022)

Subject Terms: human gut microbiota, neural network, random forest, T2D‐related microbial markers, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: https://doaj.org/toc/2770-596X

Access URL: https://doaj.org/article/2d62e7609eca44e1a43b99b9d5457bbf

DeephageTP: a convolutional neural network framework for identifying phage-specific proteins from metagenomic sequencing data

Authors: Yunmeng Chu, Shun Guo, Dachao Cui, Xiongfei Fu, Yingfei Ma

Source: PeerJ, Vol 10, p e13404 (2022)

Subject Terms: Convolutional neural network, Deep learning, Phage-specific protein, Phage, Metagenomics, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/13404.pdf; https://peerj.com/articles/13404/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/f120024be34549e9a02b0951ec7c819b

Clinical Experience of Personalized Phage Therapy Against Carbapenem-Resistant Acinetobacter baumannii Lung Infection in a Patient With Chronic Obstructive Pulmonary Disease

Authors: Xin Tan, Huaisheng Chen, Min Zhang, Ying Zhao, Yichun Jiang, Xueyan Liu, Wei Huang, Yingfei Ma

Source: Frontiers in Cellular and Infection Microbiology, Vol 11 (2021)

Subject Terms: carbapenem-resistant Acinetobacter baumannii, lung infection, personalized phage therapy, phage, endotoxin, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2021.631585/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/40956c019b3f4407993b08c75786031e

Research on Time-Dependent Component Importance Measures Considering State Duration and Common Cause Failure

Authors: Anqi Xu, Zhijian Zhang, Huazhi Zhang, He Wang, Min Zhang, Sijuan Chen, Yingfei Ma, Xiaomeng Dong

Source: Frontiers in Energy Research, Vol 8 (2020)

Subject Terms: component importance measure, time-dependent, real-time online risk monitoring, common cause failure, risk-informed operation and maintenance, configuration risk assessment, General Works

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fenrg.2020.584750/full; https://doaj.org/toc/2296-598X

Access URL: https://doaj.org/article/f526b30747b545f685bed2131a57c6f0

A human gut phage catalog correlates the gut phageome with type 2 diabetes

Authors: Yingfei Ma, Xiaoyan You, Guoqin Mai, Taku Tokuyasu, Chenli Liu

Source: Microbiome, Vol 6, Iss 1, Pp 1-12 (2018)

Subject Terms: Phageome, Metagenomics, T2D, Alterations, Correlation, Microbial ecology, QR100-130

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-018-0410-y; https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/1b4f2e74df46427a990683c8e19b579e

Isolation and Characterization of Specific Phages to Prepare a Cocktail Preventing Vibrio sp. Va-F3 Infections in Shrimp (Litopenaeus vannamei)

Authors: Ling Chen, Jiqiang Fan, Tingwei Yan, Quan Liu, Shengjian Yuan, Haoran Zhang, Jinfang Yang, Deng Deng, Shuqiang Huang, Yingfei Ma

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: vibriosis, phage therapy, Vibrio, phage cocktail, shrimp, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.02337/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/e2075db518994bb483cd733b77b7dece

Metagenomic Insights Into a Cellulose-Rich Niche Reveal Microbial Cooperation in Cellulose Degradation

Authors: Jinming Cui, Guoqin Mai, Zuowei Wang, Quan Liu, Yan Zhou, Yingfei Ma, Chenli Liu

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: metagenomics, mutualistic interaction, cellulolytic process, cellulose-degrading microbial community, genomic sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.00618/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/d8dbc53938464ff28c41a0a5485651d6

In Vitro Design and Evaluation of Phage Cocktails Against Aeromonas salmonicida

Authors: Ling Chen, Shengjian Yuan, Quan Liu, Guoqin Mai, Jinfang Yang, Deng Deng, Bingzhao Zhang, Chenli Liu, Yingfei Ma

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: in vitro, Aeromonas salmonicida, therapeutic agents, phage cocktails, T4virus, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2018.01476/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/e5bad67525c54e41bb4c2cda3fd0c3fb

Fecal bacterial microbiome diversity in chronic HIV-infected patients in China

Authors: Yang Sun, Yingfei Ma, Ping Lin, Yi-Wei Tang, Liying Yang, Yinzhong Shen, Renfan Zhang, Li Liu, Jun Cheng, Jiashen Shao, Tangkai Qi, Yan Tang, Rentian Cai, Liqian Guan, Bin Luo, Meiyan Sun, Ben Li, Zhiheng Pei, Hongzhou Lu

Source: Emerging Microbes and Infections, Vol 5, Iss 1, Pp 1-7 (2016)

Subject Terms: antiretroviral treatment, feces, HIV, microbiome, 16S rRNA, Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2222-1751

Access URL: https://doaj.org/article/0a2a02868c244827b4184be566a9ddad

An Introduction to Reliability-Fundamental Safety Assessment Techniques of Nuclear Safety
American Nuclear Society (Winter meeting)

Authors: Zheng, Gangyang, Zhang, Zhijian, Sijuan, Chen, Liu, Zibin, Anqi, Xu, Yingfei, Ma, Huazhi, Zhang

Source: Transactions of the American Nuclear Society. 117:964-968

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN602963340&indx=1&recIds=ETOCCN602963340

Quantification of the charge transport processes inside carbon nanopipettes.

Authors: Rujia Liu, Yingfei Ma, Xiaoyue Shen, Dengchao Wang

Source: Chemical Science; 11/28/2021, Vol. 12 Issue 44, p14752-14757, 6p

Association of Oral Microbiome With Risk for Incident Head and Neck Squamous Cell Cancer.

Authors: Hayes, Richard B., Jiyoung Ahn, Xiaozhou Fan, Peters, Brandilyn A., Yingfei Ma, Liying Yang, Agalliu, Ilir, Burk, Robert D., Ganly, Ian, Purdue, Mark P., Freedman, Neal D., Gapstur, Susan M., Zhiheng Pei

Source: JAMA Oncology; Mar2018, Vol. 4 Issue 3, p358-365, 8p

HIV-induced immunosuppression is associated with colonization of the proximal gut by environmental bacteria.

Authors: Liying Yang, Poles, Michael A., Fisch, Gene S., Yingfei Ma, Nossa, Carlos, Phelan, Joan A., Zhiheng Pei, Yang, Liying, Ma, Yingfei, Pei, Zhiheng

Source: AIDS (02699370); 1/2/2016, Vol. 30 Issue 1, p19-29, 11p