DrBioRight 2.0: an LLM-powered bioinformatics chatbot for large-scale cancer functional proteomics analysis

Authors: Wei Liu, Jun Li, Yitao Tang, Yining Zhao, Chaozhong Liu, Meiyi Song, Zhenlin Ju, Shwetha V. Kumar, Yiling Lu, Rehan Akbani, Gordon B. Mills, Han Liang

Source: Nature Communications, Vol 16, Iss 1, Pp 1-6 (2025)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/0340305dfbd5428ca238e4d60504d457

Whole genome and reverse protein phase array landscapes of patient derived osteosarcoma xenograft models

Authors: Chia-Chin Wu, Licai Huang, Zhongting Zhang, Zhenlin Ju, Xingzhi Song, E. Anders Kolb, Wendong Zhang, Jonathan Gill, Min Ha, Malcolm A. Smith, Peter Houghton, Christopher L. Morton, Raushan Kurmasheva, John Maris, Yael Mosse, Yiling Lu, Richard Gorlick, P. Andrew Futreal, Hannah C. Beird

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/f8e627346ea440b7a5955c5d78e43866

Comparing Bio-Ester and Mineral-Oil Emulsions on Tool Wear and Surface Integrity in Finish Turning a Ni-Based Superalloy

Authors: Paul Wood, Fathi Boud, Andrew Mantle, Wayne Carter, Syed Hossain, Urvashi Gunputh, Marzena Pawlik, Yiling Lu, José Díaz-Álvarez, María Henar Miguélez

Source: Lubricants, Vol 12, Iss 5, p 164 (2024)

Subject Terms: Inconel 718, finish turning, coolant, tool wear, surface integrity, cutting forces, Science

File Description: electronic resource

Relation: https://www.mdpi.com/2075-4442/12/5/164; https://doaj.org/toc/2075-4442

Access URL: https://doaj.org/article/16ea8c96593e47c8b75864e867453e0c

Proteo-genomic characterization of virus-associated liver cancers reveals potential subtypes and therapeutic targets

Authors: Masashi Fujita, Mei-Ju May Chen, Doris Rieko Siwak, Shota Sasagawa, Ayako Oosawa-Tatsuguchi, Koji Arihiro, Atsushi Ono, Ryoichi Miura, Kazuhiro Maejima, Hiroshi Aikata, Masaki Ueno, Shinya Hayami, Hiroki Yamaue, Kazuaki Chayama, Ju-Seog Lee, Yiling Lu, Gordon B. Mills, Han Liang, Satoshi S. Nishizuka, Hidewaki Nakagawa

Source: Nature Communications, Vol 13, Iss 1, Pp 1-11 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/2b8bfa4d2fb8409dadad46cf1b22157e

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses

Authors: Sean M. Gross, Mark A. Dane, Rebecca L. Smith, Kaylyn L. Devlin, Ian C. McLean, Daniel S. Derrick, Caitlin E. Mills, Kartik Subramanian, Alexandra B. London, Denis Torre, John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Cemal Erdem, Nicholas Lyons, Ted Natoli, Sarah Pessa, Xiaodong Lu, James Mullahoo, Jonathan Li, Miriam Adam, Brook Wassie, Moqing Liu, David F. Kilburn, Tiera A. Liby, Elmar Bucher, Crystal Sanchez-Aguila, Kenneth Daily, Larsson Omberg, Yunguan Wang, Connor Jacobson, Clarence Yapp, Mirra Chung, Dusica Vidovic, Yiling Lu, Stephan Schurer, Albert Lee, Ajay Pillai, Aravind Subramanian, Malvina Papanastasiou, Ernest Fraenkel, Heidi S. Feiler, Gordon B. Mills, Jake D. Jaffe, Avi Ma’ayan, Marc R. Birtwistle, Peter K. Sorger, James E. Korkola, Joe W. Gray, Laura M. Heiser

Source: Communications Biology, Vol 5, Iss 1, Pp 1-20 (2022)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/50400b000ed946209179e826cd85298c

Design and manufacture of one-size-fits-all healthcare face shields for the NHS during the COVID-19 pandemic

Authors: Urvashi F. Gunputh, Gavin Williams, Adam Leighton, Wayne Carter, Hirbod Varasteh, Marzena Pawlik, Yiling Lu, Ruth Sims, Melinda Lyons, Jenny Clementson, Gyan Tripathi, Nick Chambers, Matt Roe, Paul Wood

Source: Heliyon, Vol 9, Iss 9, Pp e19368- (2023)

Subject Terms: COVID-19, ppe, Face Shield, One-size-fits-all, Coefficient of friction, Ergonomics, Science (General), Q1-390, Social sciences (General), H1-99

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405844023065763; https://doaj.org/toc/2405-8440

Access URL: https://doaj.org/article/347be74c8b4d4720986344d8fda563d5

Multi-modal molecular programs regulate melanoma cell state

Authors: Miles C. Andrews, Junna Oba, Chang-Jiun Wu, Haifeng Zhu, Tatiana Karpinets, Caitlin A. Creasy, Marie-Andrée Forget, Xiaoxing Yu, Xingzhi Song, Xizeng Mao, A. Gordon Robertson, Gabriele Romano, Peng Li, Elizabeth M. Burton, Yiling Lu, Robert Szczepaniak Sloane, Khalida M. Wani, Kunal Rai, Alexander J. Lazar, Lauren E. Haydu, Matias A. Bustos, Jianjun Shen, Yueping Chen, Margaret B. Morgan, Jennifer A. Wargo, Lawrence N. Kwong, Cara L. Haymaker, Elizabeth A. Grimm, Patrick Hwu, Dave S. B. Hoon, Jianhua Zhang, Jeffrey E. Gershenwald, Michael A. Davies, P. Andrew Futreal, Chantale Bernatchez, Scott E. Woodman

Source: Nature Communications, Vol 13, Iss 1, Pp 1-18 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/96b59787498043a5a256fe86f8315695

Identification of biomarkers of response to preoperative talazoparib monotherapy in treatment naïve gBRCA+ breast cancers

Authors: Xuan Liu, Zhongqi Ge, Fei Yang, Alejandro Contreras, Sanghoon Lee, Jason B. White, Yiling Lu, Marilyne Labrie, Banu K. Arun, Stacy L. Moulder, Gordon B. Mills, Helen Piwnica-Worms, Jennifer K. Litton, Jeffrey T. Chang

Source: npj Breast Cancer, Vol 8, Iss 1, Pp 1-13 (2022)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2374-4677

Access URL: https://doaj.org/article/c1596f6b174a47a78043a40e8d62cdcd

Optimization and Recombinant Expression of Antimicrobial Peptide Molluscidin in Pichia pastoris and Its Antibacterial Activity

Authors: Qianglai TAN, Zhen ZENG, Li XU, Caijuan YANG, Xinmin LU, Yan FENG, Yiling LU, Jiaying LUO, Xinyu CHEN

Source: Shipin gongye ke-ji, Vol 43, Iss 3, Pp 106-113 (2022)

Subject Terms: crassostrea gigas, antimicrobial peptide, pichia pastoris, recombinant expression, antibacterial activity, molluscidin, Food processing and manufacture, TP368-456

File Description: electronic resource

Relation: https://doaj.org/toc/1002-0306

Access URL: https://doaj.org/article/9f23f756b96f42b28c6268d42262e056

Risk control of host cell proteins in one therapeutic antibody produced by concentrated fed‐batch (CFB) mode

Authors: Yiling Lu, Jun Lin, Tianze Bian, Jin Chen, Dan Liu, Mingjun Ma, Zhen Gao, Jiemin Chen, Dianwen Ju, Xing Wang

Source: Engineering in Life Sciences, Vol 23, Iss 3, Pp n/a-n/a (2023)

Subject Terms: concentrated fed‐batch (CFB), ELISA, host cell proteins (HCPs), mass spectrum (MS), risk control, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/1618-0240; https://doaj.org/toc/1618-2863

Access URL: https://doaj.org/article/35b8e0e483434c36ad9dc92c362ffee4

Research on the Surface Deformation, Fault Rupture, and Coseismic Geohazard of the 2022 Luding Mw 6.8 Earthquake

Authors: Yiling Lu, Yinghui Yang, Li Zeng, Wanfu Xu, Jiawei Song, Xiaoyun Li

Source: Sensors, Vol 23, Iss 24, p 9875 (2023)

Subject Terms: Luding earthquake, coseismic InSAR deformation, faulting model inversion, coseismic geohazard, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://www.mdpi.com/1424-8220/23/24/9875; https://doaj.org/toc/1424-8220

Access URL: https://doaj.org/article/b0d341333eb84dbca615fc1e9c108b29

Long Sump Life Effects of a Naturally Aged Bio-Ester Oil Emulsion on Tool Wear in Finish Turning a Ni-Based Superalloy

Authors: Paul Wood, Andrew Mantle, Fathi Boud, Wayne Carter, Urvashi Gunputh, Marzena Pawlik, Yiling Lu, José Díaz-Álvarez, María Henar Miguélez Garrido

Source: Metals, Vol 13, Iss 9, p 1610 (2023)

Subject Terms: machinability, MWF, wear rate, Inconel 718, lubricity, synthetic coolant, Mining engineering. Metallurgy, TN1-997

File Description: electronic resource

Relation: https://www.mdpi.com/2075-4701/13/9/1610; https://doaj.org/toc/2075-4701

Access URL: https://doaj.org/article/b5ee7515f0c94056971e1c19e0f1f9ea

Microstructure Effects on the Machinability of AM-Produced Superalloys

Authors: Paul Wood, José Díaz-Álvarez, Alexis Rusinek, Urvashi Gunputh, Slim Bahi, Antonio Díaz-Álvarez, Maria Henar Miguélez, Yiling Lu, Pawel Platek, Judyta Sienkiewicz

Source: Crystals, Vol 13, Iss 8, p 1190 (2023)

Subject Terms: machinability, serrated chips, additive manufacturing, Inconel 718, grain structures, texture, Crystallography, QD901-999

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4352/13/8/1190; https://doaj.org/toc/2073-4352

Access URL: https://doaj.org/article/0ac45c9d20bf4461bb27ae38924f704e

Computational Study of Flow around 2D and 3D Tandem Bluff Bodies

Authors: Terrance Charles, Zhiyin Yang, Yiling Lu

Source: Journal of Applied and Computational Mechanics, Vol 7, Iss 2, Pp 528-534 (2021)

Subject Terms: tandem bluff bodies, drag coefficient, rans, numerical simulation, Mechanics of engineering. Applied mechanics, TA349-359

File Description: electronic resource

Relation: https://jacm.scu.ac.ir/article_15976_a286cfd9e9c043b9b68088091b9b909d.pdf; https://doaj.org/toc/2383-4536

Access URL: https://doaj.org/article/dd099231cd7749ad8f0349c22907d20a

How green credit policy shapes financial performance: Evidence from Chinese listed construction energy-saving enterprise

Authors: Xiaoqiu Li, Yiling Lu

Source: Frontiers in Environmental Science, Vol 10 (2022)

Subject Terms: green credit policy, construction energy-saving enterprises, financial performance, PSM-DID, meditating effect, Environmental sciences, GE1-350

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fenvs.2022.1004247/full; https://doaj.org/toc/2296-665X

Access URL: https://doaj.org/article/0d53d0865fad47d78ddff1c65957e33a

Assessment of Drag Reduction Devices Mounted on a Simplified ‎Tractor-Trailer Truck Model

Authors: Terrance Charles, Zhiyin Yang, Yiling Lu

Source: Journal of Applied and Computational Mechanics, Vol 7, Iss 1, Pp 45-53 (2021)

Subject Terms: tractor-trailer combination truck, aerodynamic drag, drag reduction device, numerical simulation, Mechanics of engineering. Applied mechanics, TA349-359

File Description: electronic resource

Relation: https://jacm.scu.ac.ir/article_15815_d66372c2aa596500db4a3824f1fda977.pdf; https://doaj.org/toc/2383-4536

Access URL: https://doaj.org/article/ff2776a93dd7490ea682b5db3783ab90

Computational Analysis of Turbulent Flow over a Bluff Body with ‎Drag Reduction Devices

Authors: Adam Abikan, Zhiyin Yang, Yiling Lu

Source: Journal of Applied and Computational Mechanics, Vol 6, Iss Special Issue, Pp 1210-1219 (2020)

Subject Terms: aerodynamic drag, bluff body, drag reduction devices, heavy vehicles, Mechanics of engineering. Applied mechanics, TA349-359

File Description: electronic resource

Relation: https://jacm.scu.ac.ir/article_15614_47dda39ac168e57982e37107d2c0bd3f.pdf; https://doaj.org/toc/2383-4536

Access URL: https://doaj.org/article/042232deb16042a992915aed325773a0

p85β regulates autophagic degradation of AXL to activate oncogenic signaling

Authors: Ling Rao, Victor C. Y. Mak, Yuan Zhou, Dong Zhang, Xinran Li, Chloe C. Y. Fung, Rakesh Sharma, Chao Gu, Yiling Lu, George L. Tipoe, Annie N. Y. Cheung, Gordon B. Mills, Lydia W. T. Cheung

Source: Nature Communications, Vol 11, Iss 1, Pp 1-15 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/adc6777a01c94b29a362d31af3cc89e0

A Heuristic-Based Adaptive Iterated Greedy Algorithm for Lot-Streaming Hybrid Flow Shop Scheduling Problem with Consistent and Intermingled Sub-Lots

Authors: Yiling Lu, Qiuhua Tang, Quanke Pan, Lianpeng Zhao, Yingying Zhu

Source: Sensors, Vol 23, Iss 5, p 2808 (2023)

Subject Terms: hybrid flow shop scheduling, consistent sub-lots, intermingle, heuristic-based, adaptive strategy, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://www.mdpi.com/1424-8220/23/5/2808; https://doaj.org/toc/1424-8220

Access URL: https://doaj.org/article/204b97f36209483eb37caaf0a101e969

On the Lubricity and Comparative Life Cycle of Biobased Synthetic and Mineral Oil Emulsions in Machining Titanium Ti-6Al-4V at Low Cutting Speed

Authors: Paul Wood, Fathi Boud, Wayne Carter, Hirbod Varasteh, Urvashi Gunputh, Marzena Pawlik, Jenny Clementson, Yiling Lu, Syed Hossain, Matthew Broderick, Munusamy Raguraman, Andy Smith, Andy Mantle, Jamie McGourlay

Source: Journal of Manufacturing and Materials Processing, Vol 6, Iss 6, p 154 (2022)

Subject Terms: MWF, bio-based emulsions, lubricity, titanium, thread tapping, clean manufacturing, Production capacity. Manufacturing capacity, T58.7-58.8

File Description: electronic resource

Relation: https://www.mdpi.com/2504-4494/6/6/154; https://doaj.org/toc/2504-4494

Access URL: https://doaj.org/article/38ce1e71b4f84015bce73c432685a3f9