Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques

Authors: Hong, Ziliang, Jha, Debesh, Biswas, Koushik, Zhang, Zheyuan, Velichko, Yury, Yazici, Cemal, Tirkes, Temel, Borhani, Amir, Turkbey, Baris, Medetalibeyoglu, Alpay, Durak, Gorkem, Bagci, Ulas

Source: 2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) Engineering in Medicine and Biology Society (EMBC), 2024 46th Annual International Conference of the IEEE. :1-4 Jul, 2024

Relation: 2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

Large-Scale Multi-Center CT and MRI Segmentation of Pancreas with Deep Learning

Authors: Zhang, Zheyuan, Keles, Elif, Durak, Gorkem, Taktak, Yavuz, Susladkar, Onkar, Gorade, Vandan, Jha, Debesh, Ormeci, Asli C., Medetalibeyoglu, Alpay, Yao, Lanhong, Wang, Bin, Isler, Ilkin Sevgi, Peng, Linkai, Pan, Hongyi, Vendrami, Camila Lopes, Bourhani, Amir, Velichko, Yury, Gong, Boqing, Spampinato, Concetto, Pyrros, Ayis, Tiwari, Pallavi, Klatte, Derk C. F., Engels, Megan, Hoogenboom, Sanne, Bolan, Candice W., Agarunov, Emil, Harfouch, Nassier, Huang, Chenchan, Bruno, Marco J., Schoots, Ivo, Keswani, Rajesh N., Miller, Frank H., Gonda, Tamas, Yazici, Cemal, Tirkes, Temel, Turkbey, Baris, Wallace, Michael B., Bagci, Ulas

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2405.12367

Radiomics Boosts Deep Learning Model for IPMN Classification

Authors: Yao, Lanhong, Zhang, Zheyuan, Demir, Ugur, Keles, Elif, Vendrami, Camila, Agarunov, Emil, Bolan, Candice, Schoots, Ivo, Bruno, Marc, Keswani, Rajesh, Miller, Frank, Gonda, Tamas, Yazici, Cemal, Tirkes, Temel, Wallace, Michael, Spampinato, Concetto, Bagci, Ulas

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2309.05857

Secondary Bile Acid Derivatives Are Contributors to the Fecal Bile Acid Pool and Associated With Bile Acid–Modulating Nutrients

Authors: Wolf, Patricia G ^{1, 2, ⁎}, Welsh, Caitlin ³, Binion, Briawna ⁴, Dai, Hanchu ⁵, Oliveira, Manoela Lima ^{6, 7}, Hamm, Alyshia ^{6, 7}, Goldberg, Sarah ⁸, Buobu, Pius Sarfo ^{1, 2}, Schering, Teresa ⁷, Vergis, Sevasti ^{7, 9}, Kessee, Nicollette ⁶, Gomez, Sandra L ⁸, Yazici, Cemal ¹⁰, Maienschein-Cline, Mark ¹¹, Byrd, Doratha A ¹², Gaskins, H Rex ^{4, 5, 9, 13}, Ridlon, Jason M. ^{4, 5, 9, 13}, Mutlu, Ece ¹⁴, Greening, Chris ³, Tussing-Humphreys, Lisa ^{6, 7, ⁎⁎}

Source: In The Journal of Nutrition March 2025 155(3):826-838

Large-scale multi-center CT and MRI segmentation of pancreas with deep learning

Authors: Zhang, Zheyuan, Keles, Elif, Durak, Gorkem, Taktak, Yavuz, Susladkar, Onkar, Gorade, Vandan, Jha, Debesh, Ormeci, Asli C., Medetalibeyoglu, Alpay, Yao, Lanhong, Wang, Bin, Isler, Ilkin Sevgi, Peng, Linkai, Pan, Hongyi, Vendrami, Camila Lopes, Bourhani, Amir, Velichko, Yury, Gong, Boqing, Spampinato, Concetto, Pyrros, Ayis, Tiwari, Pallavi, Klatte, Derk C.F., Engels, Megan, Hoogenboom, Sanne, Bolan, Candice W., Agarunov, Emil, Harfouch, Nassier, Huang, Chenchan, Bruno, Marco J., Schoots, Ivo, Keswani, Rajesh N., Miller, Frank H., Gonda, Tamas, Yazici, Cemal, Tirkes, Temel, Turkbey, Baris, Wallace, Michael B., Bagci, Ulas

Source: In Medical Image Analysis January 2025 99

Diagnosis and Management of Acute Pancreatitis

Authors: Trikudanathan, Guru, Yazici, Cemal, Evans Phillips, Anna, Forsmark, Chris E.

Source: In Gastroenterology September 2024 167(4):673-688

A review of deep learning and radiomics approaches for pancreatic cancer diagnosis from medical imaging

Authors: Yao, Lanhong, Zhang, Zheyuan, Keles, Elif, Yazici, Cemal, Tirkes, Temel, Bagci, Ulas

Source: Current opinion in gastroenterology. 39(5):436-447

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100195930765.0x000001&indx=1&recIds=ETOCvdc_100195930765.0x000001

Recruitment and Retention Strategies for the Diabetes RElated to Acute Pancreatitis and Its Mechanisms Study

Authors: Yazici, Cemal, Dyer, Anne-Marie, Conwell, Darwin L., Afghani, Elham, Andersen, Dana K., Basina, Marina, Bellin, Melena D., Boone, Leslie R., Casu, Anna, Easler, Jeffrey J., Greenbaum, Carla J., Hart, Phil A., Jeon, Christie Y., Lee, Peter J., Meier, Shelby, Papachristou, Georgios I., Raja-Khan, Nazia T., Saeed, Zeb I., Serrano, Jose, Yadav, Dhiraj, Fogel, Evan L.

Source: Pancreas. 51(6):598-603

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100172816747.0x000001&indx=1&recIds=ETOCvdc_100172816747.0x000001

Design and Rationale for the Use of Magnetic Resonance Imaging Biomarkers to Predict Diabetes After Acute Pancreatitis in the Diabetes RElated to Acute Pancreatitis and Its Mechanisms Study

Authors: Tirkes, Temel, Chinchilli, Vernon M., Bagci, Ulas, Parker, Jason G., Zhao, Xuandong, Dasyam, Anil K., Feranec, Nicholas, Grajo, Joseph R., Shah, Zarine K., Poullos, Peter D., Spilseth, Benjamin, Zaheer, Atif, Xie, Karen L., Wachsman, Ashley M., Campbell-Thompson, Martha, Conwell, Darwin L., Fogel, Evan L., Forsmark, Christopher E., Hart, Phil A., Pandol, Stephen J., Park, Walter G., Pratley, Richard E., Yazici, Cemal, Laughlin, Maren R., Andersen, Dana K., Serrano, Jose, Bellin, Melena D., Yadav, Dhiraj

Source: Pancreas. 51(6):586-592

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100172816741.0x000001&indx=1&recIds=ETOCvdc_100172816741.0x000001

Standard Operating Procedures for Biospecimen Collection, Processing, and Storage

Authors: Wasserfall, Clive, Dyer, Anne-Marie, Speake, Cate, Andersen, Dana K., Baab, Kendall Thomas, Bellin, Melena D., Broach, James R., Campbell-Thompson, Martha, Chinchilli, Vernon M., Lee, Peter J., Park, Walter G., Pratley, Richard E., Saloman, Jami L., Sims, Emily K., Tang, Gong, Yadav, Dhiraj, Yazici, Cemal, Conwell, Darwin L.

Source: Pancreas. 51(6):593-597

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100172816715.0x000001&indx=1&recIds=ETOCvdc_100172816715.0x000001

Rationale and Design for the Diabetes RElated to Acute Pancreatitis and Its Mechanisms Study

Authors: Hart, Phil A., Papachristou, Georgios I., Park, Walter G., Dyer, Anne-Marie, Chinchilli, Vernon M., Afghani, Elham, Akshintala, Venkata S., Andersen, Dana K., Buxbaum, James L., Conwell, Darwin L., Dungan, Kathleen M., Easler, Jeffrey J., Fogel, Evan L., Greenbaum, Carla J., Kalyani, Rita R., Korc, Murray, Kozarek, Richard, Laughlin, Maren R., Lee, Peter J., Maranki, Jennifer L., Pandol, Stephen J., Phillips, Anna Evans, Serrano, Jose, Singh, Vikesh K., Speake, Cate, Tirkes, Temel, Toledo, Frederico G.S., Trikudanathan, Guru, Vege, Santhi Swaroop, Wang, Ming, Yazici, Cemal, Zaheer, Atif, Forsmark, Christopher E., Bellin, Melena D., Yadav, Dhiraj

Source: Pancreas. 51(6):568-574

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100172816669.0x000001&indx=1&recIds=ETOCvdc_100172816669.0x000001

Diagnosis and Management of Lemmel Syndrome: An Unusual Presentation and Literature Review

Authors: Love, James Stephen, Yellen, Meredith, Melitas, Constantine, Yazici, Cemal, Zar, Fred

Source: Case reports in gastroenterology. 16(3):663-674

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100169983377.0x000001&indx=1&recIds=ETOCvdc_100169983377.0x000001

The basis and design for time‐restricted eating compared with daily calorie restriction for weight loss and colorectal cancer risk reduction trial (TRE‐CRC trial)

Authors: Gabel, Kelsey, Fitzgibbon, Marian L., Yazici, Cemal, Gann, Peter, Sverdlov, Maria, Guzman, Grace, Chen, Zhengjia, McLeod, Andrew, Hamm, Alyshia, Varady, Krista A., Tussing‐Humphreys, Lisa

Source: Obesity. 30(12):2376-2385

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165466789.0x000001&indx=1&recIds=ETOCvdc_100165466789.0x000001

An assessment of pancreatology education in North American pediatric gastroenterology fellowship programs

Authors: Hopson, Puanani, Moreau, Chris, Yazici, Cemal, Han, Samuel, Akshintala, Venkata, Archibugi, Livia, Lee, Peter, Uc, Aliye

Source: Pancreatology. 22(1):142-147

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100152556015.0x000001&indx=1&recIds=ETOCvdc_100152556015.0x000001

A systematic review of machine learning-based prognostic models for acute pancreatitis: Towards improving methods and reporting quality.

Authors: Critelli, Brian, Hassan, Amier, Lahooti, Ila, Noh, Lydia, Park, Jun Sung, Tong, Kathleen, Lahooti, Ali, Matzko, Nathan, Adams, Jan Niklas, Liss, Lukas, Quion, Justin, Restrepo, David, Nikahd, Melica, Culp, Stacey, Lacy-Hulbert, Adam, Speake, Cate, Buxbaum, James, Bischof, Jason, Yazici, Cemal, Evans-Phillips, Anna

Source: PLoS Medicine; 2/24/2025, Vol. 22 Issue 2, p1-19, 19p

Subject Terms: MACHINE learning, PROGNOSTIC models, PROGNOSTIC tests, ARTIFICIAL intelligence, MEDICAL databases

Comparative diagnostic accuracy of EUS needles in solid pancreatic masses: a network meta-analysis

Authors: Han, Samuel, Bhullar, Furqan, Alaber, Omar, Kamal, Ayesha, Hopson, Puanani, Kanthasamy, Kavin, Coughlin, Sarah, Archibugi, Livia, Thiruvengadam, Nikhil, Moreau, Christopher, Jin, David, Paragomi, Pedram, Valverde-López, Francisco, Nagpal, Sajan, Yazici, Cemal, Papachristou, Georgios, Lee, Peter, Akshintala, Venkata

Source: Endoscopy international open. 09(06):E853-E862

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100189964344.0x000001&indx=1&recIds=ETOCvdc_100189964344.0x000001

Advances for Managing Pancreatic Cystic Lesions: Integrating Imaging and AI Innovations.

Authors: Seyithanoglu, Deniz, Durak, Gorkem, Keles, Elif, Medetalibeyoglu, Alpay, Hong, Ziliang, Zhang, Zheyuan, Taktak, Yavuz B., Cebeci, Timurhan, Tiwari, Pallavi, Velichko, Yuri S., Yazici, Cemal, Tirkes, Temel, Miller, Frank H., Keswani, Rajesh N., Spampinato, Concetto, Wallace, Michael B., Bagci, Ulas

Source: Cancers; Dec2024, Vol. 16 Issue 24, p4268, 33p

Subject Terms: MEDICAL protocols, ARTIFICIAL intelligence, PANCREATIC cysts, PRECANCEROUS conditions, EARLY detection of cancer, ENDOSCOPIC ultrasonography, PANCREATIC tumors, COMPUTER-aided diagnosis, NEEDLE biopsy, SENSITIVITY & specificity (Statistics), DISEASE complications

Effects of taurocholic acid metabolism by gut bacteria: A controlled feeding trial in adult African American subjects at elevated risk for colorectal cancer

Authors: Wolf, Patricia G., Gaskins, H. Rex, Ridlon, Jason M., Freels, Sally, Hamm, Alyshia, Goldberg, Sarah, Petrilli, Phyllis, Schering, Teresa, Vergis, Sevasti, Gomez-Perez, Sandra, Yazici, Cemal, Braunschweig, Carol, Mutlu, Ece, Tussing-Humphreys, Lisa

Source: In Contemporary Clinical Trials Communications September 2020 19

Tu1986 A FULLY AUTOMATIC AI SYSTEM FOR PANCREAS SEGMENTATION FROM MULTICENTER MRI SCANS

Authors: Zhang, Zheyuan, Bagci, Ulas, KELES, Elif, Vendrami, Camila Lopes, Jambawalikar, Sachin, Klatte, Derk C., Engels, Megan M., Bolan, Candice W., Agarunov, Emil, Gonda, Tamas A., Keswani, Rajesh N., Miller, Frank, Yazici, Cemal, Wallace, Michael B., Schoots, Ivo, Bruno, Marco J., Tirkes, Temel

Source: Gastroenterology. 164(6):S-1175-S-1175

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194456931.0x000001&indx=1&recIds=ETOCvdc_100194456931.0x000001

The State of Mentorship and Pancreatic Research Among Trainees in Pancreatology

Authors: Tsen, Adrianne, Han, Samuel, Moreau, Christopher, Akshintala, Venkata S., Yazici, Cemal, Archibugi, Livia, Hopson, Puanani, Gougol, Amir, Jin, David, Paragomi, Pedram, Kamal, Ayesha, Valverde-López, Francisco, Papachristou, Georgios I., Park, Walter G., Lee, Peter J.

Source: Pancreas. 49(3):336-340

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182306172.0x000001&indx=1&recIds=ETOCvdc_100182306172.0x000001