Phenotypic characterization of liver tissue heterogeneity through a next-generation 3D single-cell atlas

Authors: Dilan Martínez-Torres, Valentina Maldonado, Cristian Pérez-Gallardo, Rodrigo Yañez, Valeria Candia, Yannis Kalaidzidis, Marino Zerial, Hernán Morales-Navarrete, Fabián Segovia-Miranda

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-12 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/b2460d5358c5496790d7f3c684a3f7d2

Validation of AI-based software for objectification of conjunctival provocation test

Authors: Yury Yarin, PhD, Alexandra Kalaitzidou, BSc, Kira Bodrova, BSc, Ralph Mösges, MD, PhD, Yannis Kalaidzidis, PhD

Source: Journal of Allergy and Clinical Immunology: Global, Vol 2, Iss 3, Pp 100121- (2023)

Subject Terms: Allergy, conjunctival provocation test, deep learning, artificial intelligence (AI), Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2772829323000462; https://doaj.org/toc/2772-8293

Access URL: https://doaj.org/article/ffd3c27c7b6d46e9bf63c3f65113d7ed

Bile canaliculi remodeling activates YAP via the actin cytoskeleton during liver regeneration

Authors: Kirstin Meyer, Hernan Morales‐Navarrete, Sarah Seifert, Michaela Wilsch‐Braeuninger, Uta Dahmen, Elly M Tanaka, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial

Source: Molecular Systems Biology, Vol 16, Iss 2, Pp 1-18 (2020)

Subject Terms: actin cytoskeleton, bile canaliculi, liver regeneration, mechano‐sensing, YAP, Biology (General), QH301-705.5, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/1744-4292

Access URL: https://doaj.org/article/c5a1d5eaa4684de4b2e8e8d9612880a6

Correction: Quantification of nematic cell polarity in three-dimensional tissues.

Authors: André Scholich, Simon Syga, Hernán Morales-Navarrete, Fabián Segovia-Miranda, Hidenori Nonaka, Kirstin Meyer, Walter de Back, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial, Frank Jülicher, Benjamin M Friedrich

Source: PLoS Computational Biology, Vol 17, Iss 8, p e1009349 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/562e92c4e98747b8bd823ffd68969ef9

Quantification of nematic cell polarity in three-dimensional tissues.

Authors: André Scholich, Simon Syga, Hernán Morales-Navarrete, Fabián Segovia-Miranda, Hidenori Nonaka, Kirstin Meyer, Walter de Back, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial, Frank Jülicher, Benjamin M Friedrich

Source: PLoS Computational Biology, Vol 16, Iss 12, p e1008412 (2020)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/a411acdfd1eb43caad3cd203f6095013

Resilience of three-dimensional sinusoidal networks in liver tissue.

Authors: Jens Karschau, André Scholich, Jonathan Wise, Hernán Morales-Navarrete, Yannis Kalaidzidis, Marino Zerial, Benjamin M Friedrich

Source: PLoS Computational Biology, Vol 16, Iss 6, p e1007965 (2020)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/665b693aeb264de396115bd72d8df8f1

Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding

Authors: Janelle Lauer, Sandra Segeletz, Alice Cezanne, Giambattista Guaitoli, Francesco Raimondi, Marc Gentzel, Vikram Alva, Michael Habeck, Yannis Kalaidzidis, Marius Ueffing, Andrei N Lupas, Christian Johannes Gloeckner, Marino Zerial

Source: eLife, Vol 8 (2019)

Subject Terms: hydrogen deuterium exchange mass spectrometry (HDX-MS), guanine nucleotide exchange factor (GEF), Rab5, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/46302; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/59c0b315ce7c4837876fc46fb806c8fa

Liquid-crystal organization of liver tissue

Authors: Hernán Morales-Navarrete, Hidenori Nonaka, André Scholich, Fabián Segovia-Miranda, Walter de Back, Kirstin Meyer, Roman L Bogorad, Victor Koteliansky, Lutz Brusch, Yannis Kalaidzidis, Frank Jülicher, Benjamin M Friedrich, Marino Zerial

Source: eLife, Vol 8 (2019)

Subject Terms: liquid crystal order, 3D tissue organization, liver, cell polarity, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/44860; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/33e29e9f287b4b73becdf7cfdc1d6f67

A Global Approach for Quantitative Super Resolution and Electron Microscopy on Cryo and Epoxy Sections Using Self-labeling Protein Tags

Authors: Andreas Müller, Martin Neukam, Anna Ivanova, Anke Sönmez, Carla Münster, Susanne Kretschmar, Yannis Kalaidzidis, Thomas Kurth, Jean-Marc Verbavatz, Michele Solimena

Source: Scientific Reports, Vol 7, Iss 1, Pp 1-13 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/069d03a33d2f4c818999027d415bc62e

The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512

Authors: Hassan Mziaut, Bernard Mulligan, Peter Hoboth, Oliver Otto, Anna Ivanova, Maik Herbig, Desiree Schumann, Tobias Hildebrandt, Jaber Dehghany, Anke Sönmez, Carla Münster, Michael Meyer-Hermann, Jochen Guck, Yannis Kalaidzidis, Michele Solimena

Source: Molecular Metabolism, Vol 5, Iss 8, Pp 656-668 (2016)

Subject Terms: Internal medicine, RC31-1245

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2212877816300527; https://doaj.org/toc/2212-8778

Access URL: https://doaj.org/article/28fbe7227080437ba09617f7004a40d9

siRNA screening reveals JNK2 as an evolutionary conserved regulator of triglyceride homeostasiss⃞

Authors: Vinciane Grimard, Julia Massier, Doris Richter, Dominik Schwudke, Yannis Kalaidzidis, Eugenio Fava, Albin Hermetter, Christoph Thiele

Source: Journal of Lipid Research, Vol 49, Iss 11, Pp 2427-2440 (2008)

Subject Terms: c-jun N-terminal kinase, HeLa cells, kinase, lipid droplet, mitogen-activated protein kinase-9, Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022227520346204; https://doaj.org/toc/0022-2275

Access URL: https://doaj.org/article/16032295a35c40a6a129ab26aa54b354

Membrane identity and GTPase cascades regulated by toggle and cut‐out switches

Authors: Perla Del Conte‐Zerial, Lutz Brusch, Jochen C Rink, Claudio Collinet, Yannis Kalaidzidis, Marino Zerial, Andreas Deutsch

Source: Molecular Systems Biology, Vol 4, Iss 1, Pp 1-9 (2008)

Subject Terms: cut‐out switch, endocytosis, GTPase, mathematical model, toggle switch, Biology (General), QH301-705.5, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/1744-4292

Access URL: https://doaj.org/article/2d3c2830e348466b91950366d737a618

A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture

Authors: Hernán Morales-Navarrete, Fabián Segovia-Miranda, Piotr Klukowski, Kirstin Meyer, Hidenori Nonaka, Giovanni Marsico, Mikhail Chernykh, Alexander Kalaidzidis, Marino Zerial, Yannis Kalaidzidis

Source: eLife, Vol 4 (2015)

Subject Terms: 3D tissue geometrical model, image analysis, computational biology, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/11214; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/e44f77d36a6143a99d278551a9d47ccd

Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes

Authors: Roberto Villaseñor, Hidenori Nonaka, Perla Del Conte-Zerial, Yannis Kalaidzidis, Marino Zerial

Source: eLife, Vol 4 (2015)

Subject Terms: signal transduction, endocytosis, membrane transport, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/06156; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/3b2f53c4f64b46b781d3bebd42a746f4

Revealing molecular mechanisms by integrating high-dimensional functional screens with protein interaction data.

Authors: Angela Simeone, Giovanni Marsico, Claudio Collinet, Thierry Galvez, Yannis Kalaidzidis, Marino Zerial, Andreas Beyer

Source: PLoS Computational Biology, Vol 10, Iss 9, p e1003801 (2014)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4154648?pdf=render; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/78fbf104473246ef95cd5584349bfdb4

β2-Syntrophin is a Cdk5 substrate that restrains the motility of insulin secretory granules.

Authors: Sandra Schubert, Klaus-Peter Knoch, Joke Ouwendijk, Shabaz Mohammed, Yury Bodrov, Melanie Jäger, Anke Altkrüger, Carolin Wegbrod, Marvin E Adams, Yong Kim, Stanley C Froehner, Ole N Jensen, Yannis Kalaidzidis, Michele Solimena

Source: PLoS ONE, Vol 5, Iss 9, p e12929 (2010)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2944849?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/5d0da52b8e9b4c528ee12740e508caba

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