MSFragger-DDA+ enhances peptide identification sensitivity with full isolation window search

Authors: Fengchao Yu, Yamei Deng, Alexey I. Nesvizhskii

Source: Nature Communications, Vol 16, Iss 1, Pp 1-12 (2025)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/f4c5174dccc345a5a91a2a63281246c7

Root-specific theanine metabolism and regulation at the single-cell level in tea plants (Camellia sinensis)

Authors: Shijia Lin, Yiwen Zhang, Shupei Zhang, Yijie Wei, Mengxue Han, Yamei Deng, Jiayi Guo, Biying Zhu, Tianyuan Yang, Enhua Xia, Xiaochun Wan, William J Lucas, Zhaoliang Zhang

Source: eLife, Vol 13 (2024)

Subject Terms: scRNA-seq, theanine, metabolism, regulation, root development, Camellia sinensis, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/95891; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/2cd5f29cb0fe4ffbad587424025c86a1

Region fine-grained attention network for accurate bone age assessment

Authors: Yamei Deng, Ting Song, Xu Wang, Yonglu Chen, Jianwei Huang

Source: Mathematical Biosciences and Engineering, Vol 21, Iss 2, Pp 1857-1871 (2024)

Subject Terms: bone age assessment, region aware, fine-grained feature, attention network, Biotechnology, TP248.13-248.65, Mathematics, QA1-939

File Description: electronic resource

Relation: https://doaj.org/toc/1551-0018

Access URL: https://doaj.org/article/cc737765f3694ce7ae793817302a23d3

Origins of the Ediacaran Doushantuo High-Grade Primary Phosphorites at Kaiyang, Guizhou Province, China

Authors: Wenming Wu, Ruidong Yang, Jianzhong Liu, Zepeng Wang, Shaohu Li, Yunbin Shao, Yamei Deng, Taiping Ye, Chaokun Luo, Lei Gao, Jiyan Chen, Haili Ren, Chengfu Yang, Junhai Li, Daxue Wan, Wenxing Tai

Source: ACS Omega, Vol 8, Iss 50, Pp 47938-47953 (2023)

Subject Terms: Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2470-1343

Access URL: https://doaj.org/article/bedfa57ca1ec45c9b694c70513cef330

Bone age assessment from articular surface and epiphysis using deep neural networks

Authors: Yamei Deng, Yonglu Chen, Qian He, Xu Wang, Yong Liao, Jue Liu, Zhaoran Liu, Jianwei Huang, Ting Song

Source: Mathematical Biosciences and Engineering, Vol 20, Iss 7, Pp 13133-13148 (2023)

Subject Terms: bone age assessment, articular surface, epiphysis, hand radiography, deep neural networks, Biotechnology, TP248.13-248.65, Mathematics, QA1-939

File Description: electronic resource

Relation: https://doaj.org/toc/1551-0018

Access URL: https://doaj.org/article/da0aa334df514821b23fbf074cced261

Spatiotemporal Analysis of Water Body in the Chongming Island Region over the Past Decade Based on the ISUNet Model

Authors: Lizhi Miao, Xinkai Feng, Lijun Yang, Yanhui Ren, Yamei Deng, Tian Hang

Source: ISPRS International Journal of Geo-Information, Vol 13, Iss 4, p 134 (2024)

Subject Terms: Chongming Island, deep learning, UNet model, water body extraction, spatiotemporal variation, Geography (General), G1-922

File Description: electronic resource

Relation: https://www.mdpi.com/2220-9964/13/4/134; https://doaj.org/toc/2220-9964

Access URL: https://doaj.org/article/478463719365434dad015fbc85757e3e

Pathway attenuation of fatty acid beta-oxidation in the skeletal muscle of a type 2 diabetic mouse model.

Authors: Yang Zhou, Yifan Tan, Guixue Hou, Yan Ren, Yamei Deng, Keqiang Yan, Yue Zhang, Liang Lin, Xiaomin Lou, Siqi Liu

Source: Rapid Communications in Mass Spectrometry: RCM; 10/15/2020, Vol. 34 Issue 19, p1-11, 11p

Subject Terms: SKELETAL muscle, FATTY acids, TYPE 2 diabetes, FATTY acid oxidation

A Mechanistic Understanding of Hydrogen Peroxide Decomposition by Vanadium Minerals for Diethyl Phthalate Degradation.

Authors: Guodong Fang¹, Yamei Deng¹, Min Huang¹, Dionysiou, Dionysios D.², Cun Liu¹ liucun@issas.ac.cn, Dongmei Zhou¹ dmzhou@issas.ac.cn

Source: Environmental Science & Technology. 2/20/2018, Vol. 52 Issue 4, p2178-2185. 8p.

Subject Terms: Oxidation, Hydrogen peroxide, Vanadium, Biodegradation, Diethyl phthalate, Bioremediation, Water pollution

Appraisal of the Missing Proteins Based on the mRNAs Bound to Ribosomes.

Authors: Shaohang Xu, Ruo Zhou, Zhe Ren, Baojin Zhou, Zhilong Lin, Guixue Hou, Yamei Deng, Jin Zi, Liang Lin, Quanhui Wang, Xin Liu, Xun Xu, Bo Wen, Siqi Liu

Source: Journal of Proteome Research; Dec2015, Vol. 14 Issue 12, p4976-4984, 9p

Assessing Transcription Regulatory Elements To Evaluate the Expression Status of Missing Protein Genes on Chromosomes 11 and 19.

Authors: Nannan Kong, Yang Zhou, Shaohang Xu, Yamei Deng, Yang Fan, Yue Zhang, Zhe Ren, Liang Lin, Yan Ren, Quanhui Wang, Jin Zi, Bo Wen, Siqi Liu

Source: Journal of Proteome Research; Dec2015, Vol. 14 Issue 12, p4967-4975, 9p

Insights from ENCODE on Missing Proteins: Why β-Defensin Expression Is Scarcely Detected.

Authors: Yang Fan, Yue Zhang, Shaohang Xu, Nannan Kong, Yang Zhou, Zhe Ren, Yamei Deng, Liang Lin, Yan Ren, Quanhui Wang, Jin Zi, Bo Wen, Siqi Liu

Source: Journal of Proteome Research; Sep2015, Vol. 14 Issue 9, p3635-3644, 9p