Genome-wide analyses of member identification, expression pattern, and protein–protein interaction of EPF/EPFL gene family in Gossypium

Authors: Pengtao Li, Zilin Zhao, Wenkui Wang, Tao Wang, Nan Hu, Yangyang Wei, Zhihao Sun, Yu Chen, Yanfang Li, Qiankun Liu, Shuhan Yang, Juwu Gong, Xianghui Xiao, Yuling Liu, Yuzhen Shi, Renhai Peng, Quanwei Lu, Youlu Yuan

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-20 (2024)

Subject Terms: Cotton, EPF/EPFL gene family, Expression pattern, Protein–protein interaction, qRT-PCR verification, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/4a8e15f19253404da7550ecb86f16a5c

Real-time prediction of the chemical oxygen demand component parameters in activated sludge model using backpropagation neural network

Authors: Ping Wang, Yanqiong Chen, Chen Zhang, Yuzhen Shi, Bin Wang, Chaochao Lai, Huan He, Bin Huang

Source: Heliyon, Vol 10, Iss 16, Pp e35580- (2024)

Subject Terms: Activated sludge models, Backpropagation neural networks, Chemical oxygen demand components, Dynamic model, Science (General), Q1-390, Social sciences (General), H1-99

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405844024116118; https://doaj.org/toc/2405-8440

Access URL: https://doaj.org/article/082f534256a94f01831d074245cbc462

Genome-wide artificial introgressions of Gossypium barbadense into G. hirsutum reveal superior loci for simultaneous improvement of cotton fiber quality and yield traits

Authors: Shaoqi Li, Linglei Kong, Xianghui Xiao, Pengtao Li, Aiying Liu, Junwen Li, Juwu Gong, Wankui Gong, Qun Ge, Haihong Shang, Jingtao Pan, Hong Chen, Yan Peng, Yuanming Zhang, Quanwei Lu, Yuzhen Shi, Youlu Yuan

Source: Journal of Advanced Research, Vol 53, Iss , Pp 1-16 (2023)

Subject Terms: Interspecific introgression, Cotton CSSLs, Kmer bin, Fiber quality and yield, Simultaneous improvement, Superior loci, Medicine (General), R5-920, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S209012322200265X; https://doaj.org/toc/2090-1232

Access URL: https://doaj.org/article/2ba0d96dfca842de8ef4e7333bd0b549

Co-Expression Network Analysis and Introgressive Gene Identification for Fiber Length and Strength Reveal Transcriptional Differences in 15 Cotton Chromosome Substitution Segment Lines and Their Upland and Sea Island Parents

Authors: Pengtao Li, Yu Chen, Rui Yang, Zhihao Sun, Qun Ge, Xianghui Xiao, Shuhan Yang, Yanfang Li, Qiankun Liu, Aiming Zhang, Baoguang Xing, Bei Wu, Xue Du, Xiaoyan Liu, Baomeng Tang, Juwu Gong, Quanwei Lu, Yuzhen Shi, Youlu Yuan, Renhai Peng, Haihong Shang

Source: Plants, Vol 13, Iss 16, p 2308 (2024)

Subject Terms: cotton chromosome segment substitution lines, fiber quality, weighted gene co-expressed network analyses, functional enrichment analysis, introgressive gene identification, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/13/16/2308; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/14b9f7d1a3f443e8b56230b2f39e354c

Quantitative Trait Locus Mapping for Plant Height and Branch Number in CCRI70 Recombinant Inbred Line Population of Upland Cotton (Gossypium hirsutum)

Authors: Gangling Li, Jincan Che, Juwu Gong, Li Duan, Zhen Zhang, Xiao Jiang, Peng Xu, Senmiao Fan, Wankui Gong, Yuzhen Shi, Aiying Liu, Junwen Li, Pengtao Li, Jingtao Pan, Xiaoying Deng, Youlu Yuan, Haihong Shang

Source: Plants, Vol 13, Iss 11, p 1509 (2024)

Subject Terms: branch number, candidate gene, high-density genetic map, plant height, quantitative trait locus, upland cotton, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/13/11/1509; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/7cb4ef3bda654532b3f100ff98ca7ee0

Genome-wide characterization of trichome birefringence-like genes provides insights into fiber yield improvement

Authors: Ziyin Li, Yuzhen Shi, Xianghui Xiao, Jikun Song, Pengtao Li, Juwu Gong, Haibo Zhang, Wankui Gong, Aiying Liu, Renhai Peng, Haihong Shang, Qun Ge, Junwen Li, Jingtao Pan, Quanjia Chen, Quanwei Lu, Youlu Yuan

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: cotton, TBL, expression pattern, lint percentage, WGCNA, GH_D02G1759, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1127760/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/f4ef00643b0043c8a83ad80a21005613

Linkage and association analyses reveal that hub genes in energy-flow and lipid biosynthesis pathways form a cluster in upland cotton

Authors: Juwu Gong, Yan Peng, Jiwen Yu, Wenfeng Pei, Zhen Zhang, Daoran Fan, Linjie Liu, Xianghui Xiao, Ruixian Liu, Quanwei Lu, Pengtao Li, Haihong Shang, Yuzhen Shi, Junwen Li, Qun Ge, Aiying Liu, Xiaoying Deng, Senmiao Fan, Jingtao Pan, Quanjia Chen, Youlu Yuan, Wankui Gong

Source: Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 1841-1859 (2022)

Subject Terms: Hub gene, Gene cluster, Interaction network, Kernel oil content, Quantitative trait loci, Upland cotton, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037022001295; https://doaj.org/toc/2001-0370

Access URL: https://doaj.org/article/08997f0cfaee4ae0b2d7a09d9206148a

Gonadotropin-releasing hormone analogue and recombinant human growth hormone treatment for idiopathic central precocious puberty in girls

Authors: Yuzhen Shi, Ziyi Ma, Xi Yang, Yanqin Ying, Xiaoping Luo, Ling Hou

Source: Frontiers in Endocrinology, Vol 13 (2022)

Subject Terms: central precocious puberty, gonadotropin-releasing hormone analogue, recombinant human growth hormone, height, growth velocity, predicted adult height, Diseases of the endocrine glands. Clinical endocrinology, RC648-665

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fendo.2022.1085385/full; https://doaj.org/toc/1664-2392

Access URL: https://doaj.org/article/e1f1e105103e488b84b3042966a0ef15

Evolution of pectin synthesis relevant galacturonosyltransferase gene family and its expression during cotton fiber development

Authors: Senmiao FAN, Aiying LIU, Xianyan ZOU, Zhen ZHANG, Qun GE, Wankui GONG, Junwen LI, Juwu GONG, Yuzhen SHI, Xiaoying DENG, Tingting JIA, Youlu YUAN, Haihong SHANG

Source: Journal of Cotton Research, Vol 4, Iss 1, Pp 1-22 (2021)

Subject Terms: Cotton fiber development, Pectin, Galacturonosyltransferases, Evolution, Transcription patterns, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/2523-3254

Access URL: https://doaj.org/article/2744ff3e2e4b4634ab642ee36b5fde71

Cotton germplasm improvement and progress in Pakistan

Authors: Abdul RAZZAQ, Muhammad Mubashar ZAFAR, Arfan ALI, Abdul HAFEEZ, Wajeeha BATOOL, Yuzhen SHI, Wankui GONG, Youlu YUAN

Source: Journal of Cotton Research, Vol 4, Iss 1, Pp 1-14 (2021)

Subject Terms: Genetic progress, Bt Cotton, GWAS, Cotton biology, Cotton economy, Molecular markers, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/2523-3254

Access URL: https://doaj.org/article/a839995a6f4d41c1b59dc1c2f03fd691

The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton

Authors: Abdul Razzaq, Muhammad Mubashar Zafar, Arfan Ali, Abdul Hafeez, Faiza Sharif, Xueing Guan, Xiaoying Deng, Li Pengtao, Yuzhen Shi, Muhammad Haroon, Wankui Gong, Maozhi Ren, Youlu Yuan

Source: Frontiers in Genetics, Vol 12 (2022)

Subject Terms: fiber quality, cotton fiber development, chromosome 7 significance, Gossypium species, stable QTLs, SNPs, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.642595/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/657061b488e14deca220da3db0973d67

Quantitative Trait Loci and Transcriptome Analysis Reveal Genetic Basis of Fiber Quality Traits in CCRI70 RIL Population of Gossypium hirsutum

Authors: Xiao Jiang, Juwu Gong, Jianhong Zhang, Zhen Zhang, Yuzhen Shi, Junwen Li, Aiying Liu, Wankui Gong, Qun Ge, Xiaoying Deng, Senmiao Fan, Haodong Chen, Zhengcheng Kuang, Jingtao Pan, Jincan Che, Shuya Zhang, Tingting Jia, Renhui Wei, Quanjia Chen, Shoujun Wei, Haihong Shang, Youlu Yuan

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: Gossypium hirsutum, RIL, fiber quality, quantitative trait loci, RNA-seq, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.753755/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/3bfa75771f5c4b47bf29b9838930c0bf

Identification of Candidate Cotton Genes Associated With Fiber Length Through Quantitative Trait Loci Mapping and RNA-Sequencing Using a Chromosome Segment Substitution Line

Authors: Quanwei Lu, Xianghui Xiao, Juwu Gong, Pengtao Li, Yan Zhao, Jiajia Feng, Renhai Peng, Yuzhen Shi, Youlu Yuan

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: QTL mapping, RNA-seq, CSSLs, fiber length, candidate genes, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.796722/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/8a6cd897f763426bba669fd44e1cf9b0

Transformation and Overexpression of Primary Cell Wall Synthesis-Related Zinc Finger Gene Gh_A07G1537 to Improve Fiber Length in Cotton

Authors: Abdul Razzaq, Muhammad Mubashar Zafar, Pengtao Li, Ge Qun, Xiaoying Deng, Arfan Ali, Abdul Hafeez, Muhammad Irfan, Aiying Liu, Maozhi Ren, Haihong Shang, Yuzhen Shi, Wankui Gong, Youlu Yuan

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: CSSLs, fiber length, zinc finger, genetic transformation, cotton biology, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.777794/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/e61fc8e980fa4f0191583289e414ccbe

QTL mapping for plant height and fruit branch number based on RIL population of upland cotton

Authors: Ruixian LIU, Xianghui XIAO, Juwu GONG, Junwen LI, Zhen ZHANG, Aiying LIU, Quanwei LU, Haihong SHANG, Yuzhen SHI, Qun GE, Muhammad Sajid IQBAL, Quanjia CHEN, Youlu YUAN, Wankui GONG

Source: Journal of Cotton Research, Vol 3, Iss 1, Pp 1-9 (2020)

Subject Terms: Upland cotton, RIL population, Agronomic traits, QTL, Plant height, Fruiting branch number, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s42397-020-0046-x; https://doaj.org/toc/2523-3254

Access URL: https://doaj.org/article/d3850f438f7d4a008eccc5c5c060ab07

QTL mapping for fiber quality and yield-related traits across multiple generations in segregating population of CCRI 70

Authors: Xiaoying DENG, Juwu GONG, Aiying LIU, Yuzhen SHI, Wankui GONG, Qun GE, Junwen LI, Haihong SHANG, Yuxiang WU, Youlu YUAN

Source: Journal of Cotton Research, Vol 2, Iss 1, Pp 1-10 (2019)

Subject Terms: QTL mapping, Fiber quality, Yield quality, Multiple generations, Upland cotton (Gossypium hirsutum L.), Plant culture, SB1-1110

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s42397-019-0029-y; https://doaj.org/toc/2523-3254

Access URL: https://doaj.org/article/af027031f55c4d47b2204a36b47abd0a

RcPAL, a key gene in lignin biosynthesis in Ricinus communis L.

Authors: Jiannong Lu, Yuzhen Shi, Weijin Li, Sen Chen, Yafei Wang, Xiaolin He, Xuegui Yin

Source: BMC Plant Biology, Vol 19, Iss 1, Pp 1-11 (2019)

Subject Terms: Ricinus communis L., RcPAL, Amplification, Transformation, Overexpression, Antisense expression, Botany, QK1-989

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12870-019-1777-z; https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/fa819654a81441e6b777741cbce319d0

Transcriptome Analysis Suggests That Chromosome Introgression Fragments from Sea Island Cotton (Gossypium barbadense) Increase Fiber Strength in Upland Cotton (Gossypium hirsutum)

Authors: Quanwei Lu, Yuzhen Shi, Xianghui Xiao, Pengtao Li, Juwu Gong, Wankui Gong, Aiying Liu, Haihong Shang, Junwen Li, Qun Ge, Weiwu Song, Shaoqi Li, Zhen Zhang, Md Harun or Rashid, Renhai Peng, Youlu Yuan, Jinling Huang

Source: G3: Genes, Genomes, Genetics, Vol 7, Iss 10, Pp 3469-3479 (2017)

Subject Terms: cotton, fiber strength, transcriptome, DEG, secondary cell wall synthesis, GenPred, Shared Data Resources, Genomic Selection, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2160-1836

Access URL: https://doaj.org/article/802a5370bf934361991660dabeb85fcd

Efficient culture protocol for plant regeneration from cotyledonary petiole explants of Jatropha curcas L.

Authors: Ying Liu, Jiannong Lu, Hongbo Zhu, Linfeng Li, Yuzhen Shi, Xuegui Yin

Source: Biotechnology & Biotechnological Equipment, Vol 30, Iss 5, Pp 907-914 (2016)

Subject Terms: Cotyledonary petiole, Jatropha curcas, regeneration, rooting, thidiazuron, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/1310-2818; https://doaj.org/toc/1314-3530

Access URL: https://doaj.org/article/4fec90ccb2c34a5fa0111c20dc092bc0

Web text mining method based on subtopic selection and three-level stratified structure

Authors: Yuzhen SHI, Donghong SHAN

Source: Dianxin kexue, Vol 32, Pp 96-104 (2016)

Subject Terms: data sparseness, text mining, stratified structure, diversity,popularity, Telecommunication, TK5101-6720, Technology

File Description: electronic resource

Relation: https://doaj.org/toc/1000-0801

Access URL: https://doaj.org/article/9e39d19a12ca4a8184d1650a9e8e1cc3