Inhibition of SARS-CoV-2 growth in the lungs of mice by a peptide-conjugated morpholino oligomer targeting viral RNA

Authors: Alexandra Sakai, Gagandeep Singh, Mahsa Khoshbakht, Scott Bittner, Christiane V. Löhr, Randy Diaz-Tapia, Prajakta Warang, Kris White, Luke Le Luo, Blanton Tolbert, Mario Blanco, Amy Chow, Mitchell Guttman, Cuiping Li, Yiming Bao, Joses Ho, Sebastian Maurer-Stroh, Arnab Chatterjee, Sumit Chanda, Adolfo García-Sastre, Michael Schotsaert, John R. Teijaro, Hong M. Moulton, David A. Stein

Source: Molecular Therapy: Nucleic Acids, Vol 35, Iss 4, Pp 102331- (2024)

Subject Terms: MT: Oligonucleotides: Therapies and Applications, peptide-conjugated morpholino oligomer, PPMO, antisense, antiviral, SARS-CoV-2, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S216225312400218X; https://doaj.org/toc/2162-2531

Access URL: https://doaj.org/article/cde8602c5de243599a35a2d086e74e3b

The role of ribosomal DNA methylation in embryonic development, aging and diseases

Authors: Fei Yang, Xutong Guo, Yiming Bao, Rujiao Li

Source: Epigenetics & Chromatin, Vol 17, Iss 1, Pp 1-11 (2024)

Subject Terms: rDNA, Methylation, Aging, Embryonic development, Disease, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1756-8935

Access URL: https://doaj.org/article/3770a6a5215e443ea402e92f049986ef

Unraveling the genetic variations underlying virulence disparities among SARS-CoV-2 strains across global regions: insights from Pakistan

Authors: Momina Jabeen, Shifa Shoukat, Huma Shireen, Yiming Bao, Abbas Khan, Amir Ali Abbasi

Source: Virology Journal, Vol 21, Iss 1, Pp 1-17 (2024)

Subject Terms: SARS-CoV-2, COVID-19, Macrodomains, pp1ab polyprotein, Nsp3, Viral fitness, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1743-422X

Access URL: https://doaj.org/article/cbbb80dbd22b4143861a3b5ea6e51099

RCoV19: A One-stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-warning

Authors: Cuiping Li, Lina Ma, Dong Zou, Rongqin Zhang, Xue Bai, Lun Li, Gangao Wu, Tianhao Huang, Wei Zhao, Enhui Jin, Yiming Bao, Shuhui Song

Source: Genomics, Proteomics & Bioinformatics, Vol 21, Iss 5, Pp 1066-1079 (2023)

Subject Terms: SARS-CoV-2, Mutation, Variants, Surveillance, Pre-warning, Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S167202292300116X; https://doaj.org/toc/1672-0229

Access URL: https://doaj.org/article/f184c259b9794e1fbebf334324d108e6

Database Commons: A Catalog of Worldwide Biological Databases

Authors: Lina Ma, Dong Zou, Lin Liu, Huma Shireen, Amir A. Abbasi, Alex Bateman, Jingfa Xiao, Wenming Zhao, Yiming Bao, Zhang Zhang

Source: Genomics, Proteomics & Bioinformatics, Vol 21, Iss 5, Pp 1054-1058 (2023)

Subject Terms: Biological database, Catalog, Database Commons, Citation, z-index, Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1672022922001693; https://doaj.org/toc/1672-0229

Access URL: https://doaj.org/article/a1ac5a0892104602a2580e786cdd0d31

From BIG Data Center to China National Center for Bioinformation

Authors: Yiming Bao, Yongbiao Xue

Source: Genomics, Proteomics & Bioinformatics, Vol 21, Iss 5, Pp 900-903 (2023)

Subject Terms: Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1672022923001092; https://doaj.org/toc/1672-0229

Access URL: https://doaj.org/article/00337596d3cd44c693221c3179af3d44

CCLHunter: An efficient toolkit for cancer cell line authentication

Authors: Congfan Bu, Xinchang Zheng, Jialin Mai, Zhi Nie, Jingyao Zeng, Qiheng Qian, Tianyi Xu, Yanling Sun, Yiming Bao, Jingfa Xiao

Source: Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 4675-4682 (2023)

Subject Terms: Cancer cell line, Cell line authentication, Web server, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037023003537; https://doaj.org/toc/2001-0370

Access URL: https://doaj.org/article/721986d21f4e4c43b3b42f1dc1fba72f

Ongoing Positive Selection Drives the Evolution of SARS-CoV-2 Genomes

Authors: Yali Hou, Shilei Zhao, Qi Liu, Xiaolong Zhang, Tong Sha, Yankai Su, Wenming Zhao, Yiming Bao, Yongbiao Xue, Hua Chen

Source: Genomics, Proteomics & Bioinformatics, Vol 20, Iss 6, Pp 1214-1223 (2022)

Subject Terms: COVID-19, SARS-CoV-2, Viral evolution, Natural selection, Darwinian selection, Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1672022922000791; https://doaj.org/toc/1672-0229

Access URL: https://doaj.org/article/2ff8618161984e91a1e8ee1f9dd309f7

Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant

Authors: Wentai Ma, Jing Yang, Haoyi Fu, Chao Su, Caixia Yu, Qihui Wang, Ana Tereza Ribeiro de Vasconcelos, Georgii A. Bazykin, Yiming Bao, Mingkun Li

Source: Genomics, Proteomics & Bioinformatics, Vol 20, Iss 1, Pp 60-69 (2022)

Subject Terms: Omicron, Genomics, Mutation, Variant of concern, SARS-CoV-2, Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S167202292200002X; https://doaj.org/toc/1672-0229

Access URL: https://doaj.org/article/8eb8293567d7418783685aeac509bf9b

Safety management and application of genomics data

Authors: Rujiao LI, Xin ZHANG, Shuhui SONG, Yanqing WANG, Dong ZOU, Jingfa XIAO, Wenming ZHAO, Zhang ZHANG, Yiming BAO

Source: 大数据, Vol 8, Pp 37-45 (2022)

Subject Terms: scientific data, genomics, deposition and sharing, data safety management, data application, Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: http://www.j-bigdataresearch.com.cn/thesisDetails#10.11959/j.issn.2096-0271.2022004; https://doaj.org/toc/2096-0271

Access URL: https://doaj.org/article/f6cef4fe3dd940539a931fd134877f79

The Elements of Data Sharing

Authors: Zhang Zhang, Shuhui Song, Jun Yu, Wenming Zhao, Jingfa Xiao, Yiming Bao

Source: Genomics, Proteomics & Bioinformatics, Vol 18, Iss 1, Pp 1-4 (2020)

Subject Terms: Biology (General), QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7

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Relation: http://www.sciencedirect.com/science/article/pii/S1672022920300486; https://doaj.org/toc/1672-0229

Access URL: https://doaj.org/article/90aa4f675502443bb70e9cf4eb19e7b4

Classification of genomic components and prediction of genes of Begomovirus based on subsequence natural vector and support vector machine

Authors: Shaojun Pei, Rui Dong, Yiming Bao, Rong Lucy He, Stephen S.-T. Yau

Source: PeerJ, Vol 8, p e9625 (2020)

Subject Terms: Begomovirus, Classification, Support vector machine, Recursive feature elimination, Subsequence natural vector, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/9625.pdf; https://peerj.com/articles/9625/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/f5d08b5d082e4bed8830154c15253327

Comparative Plastomics of Ashwagandha (Withania, Solanaceae) and Identification of Mutational Hotspots for Barcoding Medicinal Plants

Authors: Furrukh Mehmood, Abdullah, Zartasha Ubaid, Yiming Bao, Peter Poczai, Bushra Mirza

Source: Plants, Vol 9, Iss 6, p 752 (2020)

Subject Terms: ashwagandha, chloroplast genome, indels, medicinal plants, mutational hotspots, phylogenomics, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/9/6/752; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/dca5fedc4466496b834434daf6015d70

Principles for creating a single authoritative list of the world’s species

Authors: Stephen T. Garnett (Research Institute for the Environment and Livelihoods, Charles Darwin University), Les Christidis (Southern Cross University), Stijn Conix (Centre for Logic and Philosophy of Science, KU Leuven), Mark J. Costello (School of Environment, University of Auckland), Frank E. Zachos (Department of Evolutionary Biology, Faculty of Life Sciences, University of Vienna), Olaf S. Bánki (Species 2000), Yiming Bao (National Genomics Data Center, Beijing Institute of Genomics (China National Center for Bioinformation), Chinese Academy of Sciences), Saroj K. Barik (CSIR-National Botanical Research Institute, India), John S. Buckeridge (Earth & Oceanic Systems Group, RMIT), Donald Hobern (Species 2000), Aaron Lien (School of Natural Resources and the Environment, University of Arizona), Narelle Montgomery (Department of Agriculture, Water and the Environment, Australia), Svetlana Nikolaeva (Department of Earth Sciences, The Natural History Museum, London), Richard L. Pyle (B. P. Bishop Museum), Scott A. Thomson (Chelonian Research Institute), Peter Paul van Dijk (Global Wildlife Conservation), Anthony Whalen (Department of Agriculture, Water and the Environment, Australia), Zhi-Qiang Zhang (Manaaki Whenua-Landcare Research and School of Biological Sciences, The University of Auckland), Kevin R. Thiele (Taxonomy Australia, Australian Academy of Science)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_1366719

Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014

Authors: Jens H. Kuhn, Kristian G. Andersen, Sylvain Baize, Yīmíng Bào, Sina Bavari, Nicolas Berthet, Olga Blinkova, J. Rodney Brister, Anna N. Clawson, Joseph Fair, Martin Gabriel, Robert F. Garry, Stephen K. Gire, Augustine Goba, Jean-Paul Gonzalez, Stephan Günther, Christian T. Happi, Peter B. Jahrling, Jimmy Kapetshi, Gary Kobinger, Jeffrey R. Kugelman, Eric M. Leroy, Gael Darren Maganga, Placide K. Mbala, Lina M. Moses, Jean-Jacques Muyembe-Tamfum, Magassouba N'Faly, Stuart T. Nichol, Sunday A. Omilabu, Gustavo Palacios, Daniel J. Park, Janusz T. Paweska, Sheli R. Radoshitzky, Cynthia A. Rossi, Pardis C. Sabeti, John S. Schieffelin, Randal J. Schoepp, Rachel Sealfon, Robert Swanepoel, Jonathan S. Towner, Jiro Wada, Nadia Wauquier, Nathan L. Yozwiak, Pierre Formenty

Source: Viruses, Vol 6, Iss 11, Pp 4760-4799 (2014)

Subject Terms: Ebola, Ebola virus, ebolavirus, filovirid, Filoviridae, filovirus, genome annotation, Lomela, Lokolia, Makona, mononegavirad, Mononegavirales, mononegavirus, virus classification, virus isolate, virus nomenclature, virus strain, virus taxonomy, virus variant, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.mdpi.com/1999-4915/6/11/4760; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/7f8b803671844b9a89919675c08d6a39

Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

Authors: Jens H. Kuhn, Kristian G. Andersen, Yīmíng Bào, Sina Bavari, Stephan Becker, Richard S. Bennett, Nicholas H. Bergman, Olga Blinkova, Steven Bradfute, J. Rodney Brister, Alexander Bukreyev, Kartik Chandran, Alexander A. Chepurnov, Robert A. Davey, Ralf G. Dietzgen, Norman A. Doggett, Olga Dolnik, John M. Dye, Sven Enterlein, Paul W. Fenimore, Pierre Formenty, Alexander N. Freiberg, Robert F. Garry, Nicole L. Garza, Stephen K. Gire, Jean-Paul Gonzalez, Anthony Griffiths, Christian T. Happi, Lisa E. Hensley, Andrew S. Herbert, Michael C. Hevey, Thomas Hoenen, Anna N. Honko, Georgy M. Ignatyev, Peter B. Jahrling, Joshua C. Johnson, Karl M. Johnson, Jason Kindrachuk, Hans-Dieter Klenk, Gary Kobinger, Tadeusz J. Kochel, Matthew G. Lackemeyer, Daniel F. Lackner, Eric M. Leroy, Mark S. Lever, Elke Mühlberger, Sergey V. Netesov, Gene G. Olinger, Sunday A. Omilabu, Gustavo Palacios, Rekha G. Panchal, Daniel J. Park, Jean L. Patterson, Janusz T. Paweska, Clarence J. Peters, James Pettitt, Louise Pitt, Sheli R. Radoshitzky, Elena I. Ryabchikova, Erica Ollmann Saphire, Pardis C. Sabeti, Rachel Sealfon, Aleksandr M. Shestopalov, Sophie J. Smither, Nancy J. Sullivan, Robert Swanepoel, Ayato Takada, Jonathan S. Towner, Guido van der Groen, Viktor E. Volchkov, Valentina A. Volchkova, Victoria Wahl-Jensen, Travis K. Warren, Kelly L. Warfield, Manfred Weidmann, Stuart T. Nichol

Source: Viruses, Vol 6, Iss 9, Pp 3663-3682 (2014)

Subject Terms: Bundibugyo virus, cDNA clone, cuevavirus, Ebola, Ebola virus, ebolavirus, filovirid, Filoviridae, filovirus, genome annotation, ICTV, International Committee on Taxonomy of Viruses, Lloviu virus, Marburg virus, marburgvirus, mononegavirad, Mononegavirales, mononegavirus, Ravn virus, RefSeq, Reston virus, reverse genetics, Sudan virus, Taï Forest virus, virus classification, virus isolate, virus nomenclature, virus strain, virus taxonomy, virus variant, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.mdpi.com/1999-4915/6/9/3663; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/cd8d703b13bb4068a4fb369e9a6db099

Implementation of Objective PASC-Derived Taxon Demarcation Criteria for Official Classification of Filoviruses

Authors: Yīmíng Bào, Gaya K. Amarasinghe, Christopher F. Basler, Sina Bavari, Alexander Bukreyev, Kartik Chandran, Olga Dolnik, John M. Dye, Hideki Ebihara, Pierre Formenty, Roger Hewson, Gary P. Kobinger, Eric M. Leroy, Elke Mühlberger, Sergey V. Netesov, Jean L. Patterson, Janusz T. Paweska, Sophie J. Smither, Ayato Takada, Jonathan S. Towner, Viktor E. Volchkov, Victoria Wahl-Jensen, Jens H. Kuhn

Source: Viruses, Vol 9, Iss 5, p 106 (2017)

Subject Terms: cuevavirus, Ebola, ebolavirus, Filoviridae, filovirus, marburgvirus, Mononegavirales, virus taxonomy, virus classification, ICTV, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.mdpi.com/1999-4915/9/5/106; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/f40d2b0814514f12b6108274168157ff

Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae)

Authors: Jens H. Kuhn, Michael R. Wiley, Sergio E. Rodriguez, Yīmíng Bào, Karla Prieto, Amelia P. A. Travassos da Rosa, Hilda Guzman, Nazir Savji, Jason T. Ladner, Robert B. Tesh, Jiro Wada, Peter B. Jahrling, Dennis A. Bente, Gustavo Palacios

Source: Viruses, Vol 8, Iss 6, p 164 (2016)

Subject Terms: Bunyaviridae, bunyavirus, nairovirus, Dera Ghazi Khan virus, Erve virus, Ganjam virus, Hughes virus, Qalyub virus, Sakhalin virus, Tunis virus, virus classification, virus taxonomy, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.mdpi.com/1999-4915/8/6/164; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/7620e956959d4f36b50c5177e4fda114

Machine Learning Early Detection of SARS‐CoV‐2 High‐Risk Variants

Authors: Lun Li, Cuiping Li, Na Li, Dong Zou, Wenming Zhao, Hong Luo, Yongbiao Xue, Zhang Zhang, Yiming Bao, Shuhui Song

Source: Advanced Science, Vol 11, Iss 45, Pp n/a-n/a (2024)

Subject Terms: haplotype network, high‐risk variant, machine learning, pre‐warning, SARS‐CoV‐2, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2198-3844

Access URL: https://doaj.org/article/088b0965cb8948f89dfd00f37dc71eef

Experimental and Finite Element Analysis on the Structural Performance of Lightweight Hollow Slab Prefabricated Staircases

Authors: Jingmin Liu, Yiming Bao, Kang Qin

Source: Buildings, Vol 15, Iss 2, p 245 (2025)

Subject Terms: prefabricated slab staircase, lightweight, static loading, structural performance, ABAQUS (2020), Building construction, TH1-9745

File Description: electronic resource

Relation: https://www.mdpi.com/2075-5309/15/2/245; https://doaj.org/toc/2075-5309

Access URL: https://doaj.org/article/281589b513114449a38b51d20f4705ac